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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0779900 |
| Transcript ID | LotjaGi1g1v0779900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor; TAIR: AT5G28300.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2; TrEMBL-Plants: tr|I1NC80|I1NC80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135173411..135176302) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGATTATTTCAATTTAGGAGGTGTTGAGTCACTGTCTTTGAAAAGGGTGTGGGGGGCAATCTTTTCCATTGCATGC AAGTACAATCTCCTTGATAAACACGAGGAAGAGAGAGATACAAGAGAAAGATATTAACGTTATGTGAAGCAAAGGTGCTT GTATAGTTGTATAGCACACAGTGAGCACAAAGAAATTAAGAGTGCTGAAGAAGATAACACTACAACTTTCAAACACAAAC ATGTTCGATGGAGTGCCAGAACATTTGCACCAATTCGTAGCTGCTAGGACCACTCTTCCGCTTCACTCACCATTCCCACT CCTCCATGTCTCTGCAGCACAGAATAGCTTCCTGCCTTTTGATCCTTACAACCCTTCTTCTCATCAGCAACAATTGCAAC TCCAAACCAATCTCTTGCACCACCAGTCCCCTGCTCACAAAATTGAAGATAATGAAGCAAGTAGCACTCTTTCTCCAATC AACTTTGAAATTGAAAGAGATCAAAGAATATTACCAGAGATGACAGATTCCTGGACAAACGATGAAGTGCTTGCACTCTT GAGTATCAGATCTAGCATGGAGAATTGCTTCCCAGAGCTCACTTGGGAACATGTCTCAAGGTACTTTTTAAATCTTGTCA TTTTGGAAATTCTTCTATAATTAATTCTAAAGTTCTTTTAACGCAAATGAATAGTTTCTAGGTGTCAGAATAGTTTTAAG GCTTATCCAGCCATGTTTTGTGCATGCTTTCAATTGAGAACCTTATTTTTCTGTTTTAATTAACTTCCTTTGAACACCTA AGTTTTGATTAATGATAATCCAACAAGAATGAAAAATTAATGAGCTAGATTTTAGTTGTGACCAGTTTGGTTTCACACCT AATTTTTTTTCAGAATCACTTCTCTTATAAAAGCTACTATACTAGAAGTAGCAATTCAAGCATCATATATTTCTTCCCCT AATGTGAAAATCTGTCAAGCTTCTAAACATATGCTATGTGTCCGATCGAGACTTTGGTGTGTTAATTTGTGTGTGTGATG CACATTAATATAAATGGTTCATAATATATTTGGCTCCACGATGAAATGCTATAGAATTACCGTTGCTTATAAGTTATAGG TCTTAACTTCTGAGTAAACATGTTTTGGATTATGGAGAACTCGTGGGGCCAAACATGCAAATATTAGGTGTGGTGGTTGG TCTTGGATAATTTATATTTGTGATGCTTATGATGTTTGCAGAAAGTTAGCAGAGATTGGGTTTAAGAAGAGTGCTGAGAA GTGCAAGGAGAAGTTTGATGATGAAAGCAGATATTTCAACAACATTAATTACGGAAAAAGCTACGATTTTATTAGTGAGC TTGAAGTGCTTTATCAAGGTGGTGATGATCAAAACTCTGATGAAAAGACTAAGCAACTTGAAAAGCCAATGGAACATTTG GAAGAGAATTCTAGAATATTGGATAATAATATTGATGATGCTCCAGTGACCAAACAATGTGAAGGAAATGACAAAATTGT TGAAAAGTCAAGGGAGAAAAAGAGGAAGAGGCGTGAGAGGTTTGAAATGGTGAAGGGCTTTTGTGAGAGTGTAGTGAACC AAATGATGGCTCAACAAGAGGAAATACACAAGAAGATCCTCAGAGACATGCTGAAGAGAGAAGAAGAGAAGCTCTCAAGA GAAGAAGCATGGAAGAAGCAAGAGGTGGATAGGATGAACAAGGAGCATGAGATGATGGCACAAGAGCTAGCTCTTGCAAG AGATAAGCATGCCACCATAGCTGAATTCTTGAAGAAATATGTATCAAGTTTCCCTTCAAGCCAAAACAAATATCTCAACT CCAAAACAAAAGGTTCACATAGAAATTCCCAAAACCCTAATCCTTCTACTTTTTTAGTTTGTGAATCAGATGTCTTCACT CATTCGGGAAACTGTAGCGGGGGAGAGAACAATCTTGAGCCAACACCTTCTTCGCATATGATTATTCTAGATAATCATCC TCAAACTATTACTCCTACTTCTCCTAGCCAAAACAATTCAAATTTACAAAACCCTAGTTCAAGTACCGCATTGTTACAAG ATCCTTCTTCATCCAATTCATCTTCAGCACCCCACAACCCTAGTTGTAATTCTTCACTCAACAGCCATGAAAATCCACTA GAGTACTCATATTCAGAGGCTACAAATAAAGCAACCCCAATCACACTTGTTCCCTACATGGAGAAAGGGGATGTTGGGAA AAGATGGCCAAGAGATGAAGTGTTAGCATTGATAAACCTCAGGTGCATGAGTCTGAATAATAACAATAATAGCAATAATG AAGAGAAGGTTCAAGGAAACAAAGGTCCTTTGTGGGAGAGAATCTCACAAGGGATGTCAGAGCTGGGGTACAAGAGGAAT GCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAATAAGTATTTTAGAAAAACCAAAGATGTTAAAAAGAAAAGGTCACT GGATTCTAGGACTTGCCCCTACTTCCACCAACTGAGCTGTTTGTACAACAATCAAGGAAAGCTTGCTCCACAATCTGAAG AGCCAGGATCTCTTGACTTGAATCCAACCTTGAATTCTGGGAATATGTCACTGGATCAACCCCAAGCTGAGACTAATTCT TTGGTTTAATTCAGATTATACATGTTGATTGTGAGGTGAGAACGTGATTAGTTTTGATTCGTCAATTTGCCCATTTTCTA TATGACATATAAAATAAGGTCCATTATATTTCTGATTTTTTGTTTTTGGTGGCGAGAGGGATTTTTATATACCATTGGTT AGACAATATTTAATTGTATTTAGACTTTGCAGAGTACCACCGACAGCTAGAACAATATTTCTATATTCTGGAGTATATGA CTTACAGACCAT
CDS sequence (LotjaGi1g1v0779900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGATGGAGTGCCAGAACATTTGCACCAATTCGTAGCTGCTAGGACCACTCTTCCGCTTCACTCACCATTCCCACT CCTCCATGTCTCTGCAGCACAGAATAGCTTCCTGCCTTTTGATCCTTACAACCCTTCTTCTCATCAGCAACAATTGCAAC TCCAAACCAATCTCTTGCACCACCAGTCCCCTGCTCACAAAATTGAAGATAATGAAGCAAGTAGCACTCTTTCTCCAATC AACTTTGAAATTGAAAGAGATCAAAGAATATTACCAGAGATGACAGATTCCTGGACAAACGATGAAGTGCTTGCACTCTT GAGTATCAGATCTAGCATGGAGAATTGCTTCCCAGAGCTCACTTGGGAACATGTCTCAAGAAAGTTAGCAGAGATTGGGT TTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTTGATGATGAAAGCAGATATTTCAACAACATTAATTACGGAAAAAGC TACGATTTTATTAGTGAGCTTGAAGTGCTTTATCAAGGTGGTGATGATCAAAACTCTGATGAAAAGACTAAGCAACTTGA AAAGCCAATGGAACATTTGGAAGAGAATTCTAGAATATTGGATAATAATATTGATGATGCTCCAGTGACCAAACAATGTG AAGGAAATGACAAAATTGTTGAAAAGTCAAGGGAGAAAAAGAGGAAGAGGCGTGAGAGGTTTGAAATGGTGAAGGGCTTT TGTGAGAGTGTAGTGAACCAAATGATGGCTCAACAAGAGGAAATACACAAGAAGATCCTCAGAGACATGCTGAAGAGAGA AGAAGAGAAGCTCTCAAGAGAAGAAGCATGGAAGAAGCAAGAGGTGGATAGGATGAACAAGGAGCATGAGATGATGGCAC AAGAGCTAGCTCTTGCAAGAGATAAGCATGCCACCATAGCTGAATTCTTGAAGAAATATGTATCAAGTTTCCCTTCAAGC CAAAACAAATATCTCAACTCCAAAACAAAAGGTTCACATAGAAATTCCCAAAACCCTAATCCTTCTACTTTTTTAGTTTG TGAATCAGATGTCTTCACTCATTCGGGAAACTGTAGCGGGGGAGAGAACAATCTTGAGCCAACACCTTCTTCGCATATGA TTATTCTAGATAATCATCCTCAAACTATTACTCCTACTTCTCCTAGCCAAAACAATTCAAATTTACAAAACCCTAGTTCA AGTACCGCATTGTTACAAGATCCTTCTTCATCCAATTCATCTTCAGCACCCCACAACCCTAGTTGTAATTCTTCACTCAA CAGCCATGAAAATCCACTAGAGTACTCATATTCAGAGGCTACAAATAAAGCAACCCCAATCACACTTGTTCCCTACATGG AGAAAGGGGATGTTGGGAAAAGATGGCCAAGAGATGAAGTGTTAGCATTGATAAACCTCAGGTGCATGAGTCTGAATAAT AACAATAATAGCAATAATGAAGAGAAGGTTCAAGGAAACAAAGGTCCTTTGTGGGAGAGAATCTCACAAGGGATGTCAGA GCTGGGGTACAAGAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAATAAGTATTTTAGAAAAACCAAAGATG TTAAAAAGAAAAGGTCACTGGATTCTAGGACTTGCCCCTACTTCCACCAACTGAGCTGTTTGTACAACAATCAAGGAAAG CTTGCTCCACAATCTGAAGAGCCAGGATCTCTTGACTTGAATCCAACCTTGAATTCTGGGAATATGTCACTGGATCAACC CCAAGCTGAGACTAATTCTTTGGTTTAA
Protein sequence (LotjaGi1g1v0779900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFDGVPEHLHQFVAARTTLPLHSPFPLLHVSAAQNSFLPFDPYNPSSHQQQLQLQTNLLHHQSPAHKIEDNEASSTLSPI NFEIERDQRILPEMTDSWTNDEVLALLSIRSSMENCFPELTWEHVSRKLAEIGFKKSAEKCKEKFDDESRYFNNINYGKS YDFISELEVLYQGGDDQNSDEKTKQLEKPMEHLEENSRILDNNIDDAPVTKQCEGNDKIVEKSREKKRKRRERFEMVKGF CESVVNQMMAQQEEIHKKILRDMLKREEEKLSREEAWKKQEVDRMNKEHEMMAQELALARDKHATIAEFLKKYVSSFPSS QNKYLNSKTKGSHRNSQNPNPSTFLVCESDVFTHSGNCSGGENNLEPTPSSHMIILDNHPQTITPTSPSQNNSNLQNPSS STALLQDPSSSNSSSAPHNPSCNSSLNSHENPLEYSYSEATNKATPITLVPYMEKGDVGKRWPRDEVLALINLRCMSLNN NNNSNNEEKVQGNKGPLWERISQGMSELGYKRNAKRCKEKWENINKYFRKTKDVKKKRSLDSRTCPYFHQLSCLYNNQGK LAPQSEEPGSLDLNPTLNSGNMSLDQPQAETNSLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 590 | 579 | 1.5E-192 | – | |
| PANTHER | 12 | 590 | 579 | 1.5E-192 | – | |
| Pfam | 96 | 157 | 62 | 1.6E-10 | – | |
| Gene3D | 98 | 154 | 57 | 5.2E-13 | – | |
| Coils | 250 | 270 | 21 | - | – | |
| Coils | 282 | 302 | 21 | - | – | |
| MobiDBLite | 319 | 344 | 26 | - | – | |
| MobiDBLite | 379 | 430 | 52 | - | – | |
| Pfam | 460 | 552 | 93 | 3.0E-18 | – | |
| CDD | 460 | 532 | 73 | 1.6505E-23 | – | |
| Gene3D | 462 | 531 | 70 | 3.8E-24 | – | |
| MobiDBLite | 563 | 595 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0779900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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