Transcript — View — Lotus Base

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LotjaGi1g1v0780500.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0780500
Transcript ID	LotjaGi1g1v0780500.1
Lotus japonicus genome version	Gifu v1.2
Description	Aldo/keto reductase family oxidoreductase; TAIR: AT1G60690.1 NAD(P)-linked oxidoreductase superfamily protein; Swiss-Prot: sp\|C6TBN2\|AKR1_SOYBN Probable aldo-keto reductase 1; TrEMBL-Plants: tr\|I1JRM5\|I1JRM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0780500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:135268978..135272080) extracted from Lotus japonicus Gifu genome v1.2.

AACGAATATATATGAGCGTGATGACGCTTCCTTAGTGTGAGCTGTGAAGAAGAAAAGAAGGGAGAGGGAGAGAGGTGCAA AACTGGAAGAGGAATAGAGAAAGTCTGAATCACAAAAATGGGACTTATTGATATTCCTCTTGTGAAGCTTGGAAGCCAAG GTATGGAGGTAAGTTTAATCAATTGAAATCATCATTTTGAGTGGCTTCCTAGTTCTGTGAATGATGTGTTTTTCAATTTC TGGATTTTGATTGCATTGTAATTGTAGGTTTCCAAGTTAGGATTAGGGTGCATGAGCCTCAGTGGAGTGTATAACTCTCC TCTTCCTGAAGAAGATGGTATCTCCTTGATCAAGCATGCTTTCAGCAAAGGGATCACCTTTTTTGACACATCAGATGTTT ATGGACCCCATGTCAATGAAATTTTGATTGGAAAGGTACTTTACTTGTAAGTTGTAACCCTATAATCAGTAACTGGTCTT AGGATTTGGTCTGTGCCCCTAAAGGGTATAGTTCCACTTCTTGCTTATGACAAGAGGTGTTGTGTTGCTGTGTAGCATTG TTTTTAATTTTCCTTTCACACCAAAGAAAAGTAACTCATCCCTTTCAATTTTTGAAATGGAATGGTAACATCAATCAACA ATTTAGAACACATACATAACATTTGAACTTTCAGGCACTCAAGGACTTGCCTCGAGATCAAGTTCAGATTGCCACAAAAT TTGGGGTTGTCAAATACGATTGGGCTAATGTTATAGTTAATGGTACCCCTGAATATGTTCGATCCTGTTGCGAGGCTAGC CTCCAACGCCTTGGGGTGGAGTACATTGATCTCTTTTATCAACACCGTATTGACACCACTGTTTCCATTGAGGATACTGT GAGTAATGCCCCAACGAAACCTTTTTTTTATTCTTGTCTTTAGGGGGGACAATTTGTTGGTAGCTGTGTGTGTCTGTCTT TGATTTTCTGTTTTTGTTGATCACAGATGGGAGAGCTTAAGAAGTTGGTCCAAGAGGGAAAGATAAAGTACATAGGATTA TCTGAAACTAGTCCTGATACACTAAGGAGGGCACATGCTGTTCATCCAATTACTGCTGTGCAAATGGAGTGGTCTCTTTG GGCTCGTGATATTGAGGAAGAGTTTGTCCCCCTTTGCAGGTACATACATGTCCAGGATGTGATAGAAGTTTCACTTCTAT TGAGCTTCCAATTATTGAGCCAGTTATTGCTATTCATTTTTATCCCATCTATATTGAATAATTGCAGTCTATTATTGAGT GTTTAGTTCTACAATATTCTGATTAATAGGGTATTGAGCCGCTTGTCAGGCAATCCTTAGATCAGGGAAATTGAGCTGTT TGCTTTTCTTCTTAATTTTCCTAACTTTTCTAATTAGGTCTTAGATGTTCTTGCTTGGTAGGAATTAGCTTCCTATCAAT GTGCTTACTAAATTTGCTATACTAGCTGATTAGTTTCCTACTTCGTGGTCAACCTTCAAGTTTGGGTTTGCTTAAATGCT CTACCTTATAGGTCTCTAAGTGTAAATTGTGGTTGTGGTTTATCCATGAACTATTGAAAAATTAAAGACTAAGTTGAGTC AGTAGGAAATCTTAAGTATGTTTTGACTGTTTATATTGTAAGGTCACCAAGATTTTGTCAGGAAAGAGTTAAGCCATTTC CTTTAGTCCAAAGTAAAACAACACTCTTTTTAGCAAATGCATAACTCAAGTTGGAGAGGGAGAGGGAGGTGCAAAACTGG AAGAGGAATAGAGAAAGTGAGAATCACAAAAATGGGACATATTGGGAGGTGCAAATCTATTTTCTTCTTATAAAAAAAAT GTAACCAGGTTCTTTCACTTCCTGGCTCAGTACTTTTCCATGTCCTTCACAGTTCTTCACTAAATAGATTTGGTGACAAA ACTTGCAGGGAACTTGGGATTGGAATAGTGCCATATAGTCCCCTTGGTAATGGATTTTTCGGTGGCAAGGCTGTCGTGGA AAGTTTACCTGCAAACAGTGCTCTGGTATGGATTTAATCCTTTGTTTCCGATGACAATTTTGCTAGTTCATTGTTCATCA ATATCTCTTTTCACCAGGCATTCCACCCAAGGTTTCAAGGGGAGAACTTAGACAAGAACAAAATCTTCTATTCTCAGCTT GTGAAGTTGGCAGAGAAGTATGTATGTACATCGTCACAACTTGCTCTTGCATGGTTGCTTCATCAAGGAGATGACGTGGT ACCCATCCCTGGTGAGTGATTTTACATCTAGAAGAATTCGAATTCCCTACCAGCTTTCTCAATTTTGCTTGTTGCATGTT TAAGGAGGCTGTATAATATGTCTTCTGGTCATTTCATAGTGTTGCTTTGAATTGGGGATTTATTTTCTATTTTTTACGAA GGTCAACAATTCATTTGTTCTATGAACACATTGGCAGACTTTTCAATTATGACTTTTTTGCCAGTAAATAACATTTCTGC AACTCTCATGCATTGTAGGAACAACTAAGATTAAAAATCTTGATAATAATATCGGTTCGTTGGAAGTGAAGCTCAGCGAA GATGATTTGAAAGAAATTACAGATGCAATGCTAATATCTGAGGTGGTAGGGGAGCACATTAATGATGCATTTCTTAAATG CTCATGGAAGTTTGTTGACACTCCGGCAAAAGCATAGCTAGATACCAGTTATGCTGCACCTCAGCAATCAGATACATTTG AATCCTCAAACTTTGTAATGTTTTACTAAAATACAAATAAATAGATACAGATTGAGGGAGAGGCACAGTTCTGAAGAATT GAGGAAGAAAATGTTGCAGTGATCAGTGATGTTATTGTTCACAAAAGATTCCTCTGTTCTGATGCATTTGTTATGTGTAT TAGCAGCATGATGATGGTAGTATTTTTTAAAGACTTTTCCCATTAATTATGTGCTAATATCAGAAACACTAAAATTAACT GCTGTCAAGGCCTTACTCTATAGAGTTATGAAACATCCATTTATGTATATTGTATAGTACTGCCTATAGTTTTGTTTTTT GAAACTGCCTATAGTTAAAATAAATACATCATTTACATAGAAAAAAATTATTGGATATTTTTC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0780500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACTTATTGATATTCCTCTTGTGAAGCTTGGAAGCCAAGGTATGGAGGTTTCCAAGTTAGGATTAGGGTGCATGAG CCTCAGTGGAGTGTATAACTCTCCTCTTCCTGAAGAAGATGGTATCTCCTTGATCAAGCATGCTTTCAGCAAAGGGATCA CCTTTTTTGACACATCAGATGTTTATGGACCCCATGTCAATGAAATTTTGATTGGAAAGGCACTCAAGGACTTGCCTCGA GATCAAGTTCAGATTGCCACAAAATTTGGGGTTGTCAAATACGATTGGGCTAATGTTATAGTTAATGGTACCCCTGAATA TGTTCGATCCTGTTGCGAGGCTAGCCTCCAACGCCTTGGGGTGGAGTACATTGATCTCTTTTATCAACACCGTATTGACA CCACTGTTTCCATTGAGGATACTATGGGAGAGCTTAAGAAGTTGGTCCAAGAGGGAAAGATAAAGTACATAGGATTATCT GAAACTAGTCCTGATACACTAAGGAGGGCACATGCTGTTCATCCAATTACTGCTGTGCAAATGGAGTGGTCTCTTTGGGC TCGTGATATTGAGGAAGAGTTTGTCCCCCTTTGCAGGGAACTTGGGATTGGAATAGTGCCATATAGTCCCCTTGGTAATG GATTTTTCGGTGGCAAGGCTGTCGTGGAAAGTTTACCTGCAAACAGTGCTCTGGCATTCCACCCAAGGTTTCAAGGGGAG AACTTAGACAAGAACAAAATCTTCTATTCTCAGCTTGTGAAGTTGGCAGAGAAGTATGTATGTACATCGTCACAACTTGC TCTTGCATGGTTGCTTCATCAAGGAGATGACGTGGTACCCATCCCTGGAACAACTAAGATTAAAAATCTTGATAATAATA TCGGTTCGTTGGAAGTGAAGCTCAGCGAAGATGATTTGAAAGAAATTACAGATGCAATGCTAATATCTGAGGTGGTAGGG GAGCACATTAATGATGCATTTCTTAAATGCTCATGGAAGTTTGTTGACACTCCGGCAAAAGCATAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0780500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLIDIPLVKLGSQGMEVSKLGLGCMSLSGVYNSPLPEEDGISLIKHAFSKGITFFDTSDVYGPHVNEILIGKALKDLPR DQVQIATKFGVVKYDWANVIVNGTPEYVRSCCEASLQRLGVEYIDLFYQHRIDTTVSIEDTMGELKKLVQEGKIKYIGLS ETSPDTLRRAHAVHPITAVQMEWSLWARDIEEEFVPLCRELGIGIVPYSPLGNGFFGGKAVVESLPANSALAFHPRFQGE NLDKNKIFYSQLVKLAEKYVCTSSQLALAWLLHQGDDVVPIPGTTKIKNLDNNIGSLEVKLSEDDLKEITDAMLISEVVG EHINDAFLKCSWKFVDTPAKA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43625:SF51 View details on PTHR43625:SF51 Search for proteins/transripts with this domain View external data on PTHR43625:SF51	4	340	337	6.8E-196	–
PANTHER	PTHR43625 View details on PTHR43625 Search for proteins/transripts with this domain View external data on PTHR43625	4	340	337	6.8E-196	–
Gene3D	G3DSA:3.20.20.100 View details on G3DSA:3.20.20.100 Search for proteins/transripts with this domain View external data on G3DSA:3.20.20.100	6	341	336	1.1E-131	IPR036812 Show description in modal box View details on IPR036812 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF51430 View details on SSF51430 Search for proteins/transripts with this domain View external data on SSF51430	8	312	305	3.93E-99	IPR036812 Show description in modal box View details on IPR036812 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd06660 View details on cd06660 Search for proteins/transripts with this domain View external data on cd06660	9	312	304	1.82879E-111	IPR023210 Show description in modal box View details on IPR023210 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00248 View details on PF00248 Search for proteins/transripts with this domain View external data on PF00248	20	312	293	1.1E-74	IPR023210 Show description in modal box View details on IPR023210 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0780500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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