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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0781200 |
| Transcript ID | LotjaGi1g1v0781200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G25750.2 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LS04|FB187_ARATH Putative F-box protein At3g25750; TrEMBL-Plants: tr|G7K9R3|G7K9R3_MEDTR Ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0781200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135402934..135404148) extracted from Lotus japonicus Gifu genome v1.2.
GCGAAGTCTCTCTTCCTTCACCCTCCACATATAGAGCGAGATTGGGCGTATTTAGAAGCGGCCGCTCTCGATTTGATTCT TGACAAATTAGAAGAACGAATATATCATATTCGGTTTGGTAGAGTGTGCAAGAATTGGTGTTCCGTTGCAAAGCTTAACC ATCAAAATAAGCAATTCAGAAGTCATGTGCTGCCTATGCTATTGATCCCTACAGAATCAGATAGTACAATAAAGAGAAGT TTATATGGCATTCCAGGTAATAGACTCTACCCCTTCCGATCGCCAATGCTTGACAATAAAAGGTTTTGTGGCTCTAGCCA TGGTTGGATAGCAACAGTGGATGATGCTAATCAACATGTCATAACTCTAATCAATCCTTTTAAGAACGTAGCTCCCATTG TTCTGCCATGGTTACCTATTGGAATGTCATTAGATAGGGTTGTTTTGTCTGTTGACCCCTTAACGAAGCCGAATGACTAT GTGGTTGCTGCGATTCACTCGTGTCGTTGCAGACTTTCATTAATAAGAGCAGGTCAAGAATTTTGGACTTATGTACAGAA TACTGGTGTTTGGTACATTGATATCACATTTTATAGAGGTCTAGTATATGCTGTGTGTGGCCCGATTGGTTGGAAGTACA GAATTGTGTCCTTCAAACTTCCTTATTCCAGTATGGAGAAGATAATTCCAAATGTTTTCTATCAAGATAGTTATCTTCAA GGAGCCTGTCTTGTGAAATCATTAGAAGGAGACTTATGGATGGTGACAAGTTTTCAGGTATATAAGTTGGAACTAGATGC TCAAAATGGAAAAGTTTTGCAAATGTTGAAACTAGAGAGTTTGGGAGATAATGTTTTGTTTATAAGTGATTTCGGCGATT CAACTGCTGCGTCATCTTTCTATTTCTCTAATTGTCTGCAAAAGGACTTAATTTACAACGCCACCAATGATTATGACGAT GGCTCACTATTTGATTTAAGGGTCTATAATGTAAAGGAGGGAAGATTTATAAAACATGACCCTCCCATTAATCCTTCAGT CAAGAATGAGTCACCTACGTTATGGATTCTACCACAATTTCAATGGGATTGATCGATCATTGCAACTTAGAATATTCTGT TTTTTATTTATTATTTTTTCATGTTTCATCTTCAGCTCAAGCATGTCACCAGCATAAGAGACAGAATTAAGATTCTAGCT TATTGCAATTTTTTA
CDS sequence (LotjaGi1g1v0781200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATTGATCCCTACAGAATCAGATAGTACAATAAAGAGAAGTTTATATGGCATTCCAGGTAATAGACTCTACCCCTT CCGATCGCCAATGCTTGACAATAAAAGGTTTTGTGGCTCTAGCCATGGTTGGATAGCAACAGTGGATGATGCTAATCAAC ATGTCATAACTCTAATCAATCCTTTTAAGAACGTAGCTCCCATTGTTCTGCCATGGTTACCTATTGGAATGTCATTAGAT AGGGTTGTTTTGTCTGTTGACCCCTTAACGAAGCCGAATGACTATGTGGTTGCTGCGATTCACTCGTGTCGTTGCAGACT TTCATTAATAAGAGCAGGTCAAGAATTTTGGACTTATGTACAGAATACTGGTGTTTGGTACATTGATATCACATTTTATA GAGGTCTAGTATATGCTGTGTGTGGCCCGATTGGTTGGAAGTACAGAATTGTGTCCTTCAAACTTCCTTATTCCAGTATG GAGAAGATAATTCCAAATGTTTTCTATCAAGATAGTTATCTTCAAGGAGCCTGTCTTGTGAAATCATTAGAAGGAGACTT ATGGATGGTGACAAGTTTTCAGGTATATAAGTTGGAACTAGATGCTCAAAATGGAAAAGTTTTGCAAATGTTGAAACTAG AGAGTTTGGGAGATAATGTTTTGTTTATAAGTGATTTCGGCGATTCAACTGCTGCGTCATCTTTCTATTTCTCTAATTGT CTGCAAAAGGACTTAATTTACAACGCCACCAATGATTATGACGATGGCTCACTATTTGATTTAAGGGTCTATAATGTAAA GGAGGGAAGATTTATAAAACATGACCCTCCCATTAATCCTTCAGTCAAGAATGAGTCACCTACGTTATGGATTCTACCAC AATTTCAATGGGATTGA
Protein sequence (LotjaGi1g1v0781200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLIPTESDSTIKRSLYGIPGNRLYPFRSPMLDNKRFCGSSHGWIATVDDANQHVITLINPFKNVAPIVLPWLPIGMSLD RVVLSVDPLTKPNDYVVAAIHSCRCRLSLIRAGQEFWTYVQNTGVWYIDITFYRGLVYAVCGPIGWKYRIVSFKLPYSSM EKIIPNVFYQDSYLQGACLVKSLEGDLWMVTSFQVYKLELDAQNGKVLQMLKLESLGDNVLFISDFGDSTAASSFYFSNC LQKDLIYNATNDYDDGSLFDLRVYNVKEGRFIKHDPPINPSVKNESPTLWILPQFQWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 3.8E-49 | – | |
| PANTHER | 1 | 295 | 295 | 3.8E-49 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0781200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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