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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788400 |
| Transcript ID | LotjaGi1g1v0788400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P18749|ZO6_XENLA Oocyte zinc finger protein XlCOF6; TrEMBL-Plants: tr|A0A0R0HIL4|A0A0R0HIL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0788400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136094806..136096312) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGTTGGGCTCAATATGTGTCAATGAATCTTACAGTCAAAAAATGTCTCAATTCTCTTCATGCTCTCAATTTACAAGT GAAGAGAAATTTGTGCAAAATGATATTGTTAAAAGTTTGTCTCAGCTTAATGAGGTTCAGAAGGTATCTGGTTCAAACAT AATTTTTTTTGCATTGTTTTTATGTCATCTTCAATTTTTTTAATACACAACTACAAATTTGATCATGAATTGTATTTGAT AGGAATGCTATGTAGTAACTGTTGCCAAAATAGATAAAGTGTGTGTTGGAAATGGTTGGAGCTATGAAGCATGCTTTAAG TGCAATAGGAAGGCAGATTGTTCAAGTCTACCATTCACTTGTCCAAAATGTGGGAAAAAAAACACTGAAACAGTTCCAAG GTTATATACTTTAATCACTATCTATGTTTTGATGAATGCGTTTTTGCATATGATATGCTTTACTAATTGTTTAATGTATG TATTTCCAGATTTAGGGTTGAAGTTATGGTATCCTATAACAATAATAGTTCAAAATTTGTGCTGTGGGATCGAGAGTGTA TCCAATTAGTGAAGCAAACTGCTATTGATCTTAAGAAGCAACTTCTTGATGTTAGTATATACAATTACACAACTTACACT AAAGTCTTATGCATGTTTCTTTTGGAGATTAATTGTTTCGTCATTATGTAGGAAGGTGAATTTGATGCAATGGTTGTTCC AGAACCAATTGATTGCATTCTTGGAAAACTGTTTGCCTTTAAAGTTAAGGTTCAACCCGGCTACAAACAGTTTTCTGTCA CAGGAGTTTCTGATAATGAAAAGACCATTGAAAGCATAAGGGACAAATTGCAAGTTGATGAGGTATCTTTTGATCCATCT TATGAAAAAAGTTTGGATTTATAAACTTTTAACACATGATTTTATCTGTAGGATTCCCTAATGAGCAAGAAAGGGAAATC AATTAGCTCCTTCCTCAAAGAAGATGATGCATATGAGATTGTAAGTGTCTTACTAAGATATAAAGCAAGATTGAAACCTG CTCCAATAATTTGGAAGTGTGCTGATTGGTATTTATTTCTCTTAAATTTTCAGCAATCATTGTCTGCAACAGCTGATTCT GATACTACATCAATAGGACATTGTACTCCTGCTAAGAGATTGTCAAAGGATACACTAGATGATGATTTTGCATGCCAAGA TTTGCCTTCTGTTCAACTCTCTTCTTCAAAAGTCACAAAGCACATCAAAACTGAATGATATGCTTCATTTATTATTATTA AGATGAAGCTTATGAGTGAAACTTCTTTTTGCATCTTTTGGCTAGAATAGAAACTAACCATAGTTGTTAGAAACAGTTGA ATCAGTAACTGTGGCTTTTTTGTAATTAGATGCTATATAATCTTTTTGTAATTAGATGCTATCTAAACTGTTTAGCCAGT ATTGACTTCACTATGTGGAAGATGTTTTCCAGCTCACTTTATTATATGGAGTGAATATATGTCTTGG
CDS sequence (LotjaGi1g1v0788400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAATTCTCTTCATGCTCTCAATTTACAAGTGAAGAGAAATTTGTGCAAAATGATATTGTTAAAAGTTTGTCTCA GCTTAATGAGGTTCAGAAGGAATGCTATGTAGTAACTGTTGCCAAAATAGATAAAGTGTGTGTTGGAAATGGTTGGAGCT ATGAAGCATGCTTTAAGTGCAATAGGAAGGCAGATTGTTCAAGTCTACCATTCACTTGTCCAAAATGTGGGAAAAAAAAC ACTGAAACAGTTCCAAGATTTAGGGTTGAAGTTATGGTATCCTATAACAATAATAGTTCAAAATTTGTGCTGTGGGATCG AGAGTGTATCCAATTAGTGAAGCAAACTGCTATTGATCTTAAGAAGCAACTTCTTGATGAAGGTGAATTTGATGCAATGG TTGTTCCAGAACCAATTGATTGCATTCTTGGAAAACTGTTTGCCTTTAAAGTTAAGGTTCAACCCGGCTACAAACAGTTT TCTGTCACAGGAGTTTCTGATAATGAAAAGACCATTGAAAGCATAAGGGACAAATTGCAAGTTGATGAGGATTCCCTAAT GAGCAAGAAAGGGAAATCAATTAGCTCCTTCCTCAAAGAAGATGATGCATATGAGATTCAATCATTGTCTGCAACAGCTG ATTCTGATACTACATCAATAGGACATTGTACTCCTGCTAAGAGATTGTCAAAGGATACACTAGATGATGATTTTGCATGC CAAGATTTGCCTTCTGTTCAACTCTCTTCTTCAAAAGTCACAAAGCACATCAAAACTGAATGA
Protein sequence (LotjaGi1g1v0788400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQFSSCSQFTSEEKFVQNDIVKSLSQLNEVQKECYVVTVAKIDKVCVGNGWSYEACFKCNRKADCSSLPFTCPKCGKKN TETVPRFRVEVMVSYNNNSSKFVLWDRECIQLVKQTAIDLKKQLLDEGEFDAMVVPEPIDCILGKLFAFKVKVQPGYKQF SVTGVSDNEKTIESIRDKLQVDEDSLMSKKGKSISSFLKEDDAYEIQSLSATADSDTTSIGHCTPAKRLSKDTLDDDFAC QDLPSVQLSSSKVTKHIKTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 185 | 184 | 9.5E-22 | – | |
| PANTHER | 2 | 185 | 184 | 9.5E-22 | – | |
| Gene3D | 6 | 177 | 172 | 2.0E-11 | – | |
| CDD | 26 | 153 | 128 | 3.68964E-17 | ||
| SUPERFAMILY | 28 | 157 | 130 | 7.88E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0788400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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