Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788900 |
| Transcript ID | LotjaGi1g1v0788900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G78760.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136123630..136125374) extracted from Lotus japonicus Gifu genome v1.2.
GGATTAGCGAGTTGTCAGACGAAATTCTCCTTCTCATTCTCTCGTTTCTTCCAACTGAGATATCATTAACACAAATCATG TTTCAAAGAGGTGGAGGCCACTTTGGCTTTCAGTCCCCACCCTTGATTTCGACTGTGACAGATATTATGAACGTGAGAAA CAACAGTGTGGCTTTGCCAGTTTTGTATGGGCAACCATTCAGGCACGAGGTCCGCACCAACCAATCAAAGGGTTTCGCCT CCTCACAAAGGCGTATTATGACCAGCGATGGTTGAACAAAGCAATACAACGTGGAGTTGAGAACCTTGAAGTTGAGTGTC ACCCTTCATTCTATTTGCCTAGCAACATCTTCAGCTGCACAACACTTGTTTCTCTCAAGTTGACCTGTGCATTTTTTCCA AATAGATATGATCTTTCTTCTCCTATTTACCTTTAATCCCTTAAAACCCTGAGAGAAGTTGTCTTTTTACCGGCTCAAGA TTTTATGGAGTTTCTTTATGGATGCCCAATTCTTGAAATTCTGGAAGCAAATGATGTAGTCTTTTATGACTCTTTATTCC AACGGAAATTTAAGAGTTTATCCAAGTTGGTCAGAGCAGAGGTCTTTAAACTCAGCTGCCATCTTGAGGTATTTTTTATT CCGATGGAAGTTTTTTCTAATGTGAAGTTTCTGAGCTCAGACCAGGTTAGTATATGGTAAAGGAGGATAATGTTTAGTGT GTTTTTTGTTTTCTGCTTGCTTGTAGACTGTGGTGGTGATAATAATTTCTCTTTACAACTCTTGCAGTGGTGTGGTGAAG ACATTCCTATGTTTCCCAATTTAATTCATCTGGAGCTCATTAACGTCGAACTTAAGCTATATATACTCAATTGCAGCCCT AACCTTCAAATATTTGTCTTTGATTTCAAAGATTCTTCTTCTGAGCATTGGTTCGTTCCGGAATGTTTTTCTTCACAGCT CAAAAAGTGTGTTATTGCAAATTATACAGGCATGGCAAATCAGATGAGATTTGTTAAGTATGTTATGCAAAATTCAACAT CTTTACGCACCATGACAATAAGTTGCAGTAGTGAGGATCAGCAGAAAAAACTTCAAATGTTAATAGAATCATGCCCGCGG AGCTCTGCAACCCTGTCAACTTTTATTTAAGTAATGGATATCATATGCCTGTTATTGTTCCTAGACGGTCTGTGCCTCAG TTGATCTATCATGTTCTTATTTAGCATTGGCTTAGGCCTTATGTTTGAGAAGCTTCACAATATAGGCTCAAGATACTTGC TCTTTCTTAGCACCATCCACTACTCAATATATTTATCATTTATTCTTTCTCTTTGCTCACTTCTATGCAAACAAGTGCAG TTATTTGAATCTCAGGCACTCCTGACATCCCCTTAAAACAAGCTAGCTTGTATCCAATATAAAAATACCTTGGGCTTGTG CATACTTTTTGGACATGATCATCACAAAAGTTTTTCAATATTGCAGTATAAACTGGCATAAAGAGAAGCAGTTTATAATA CAGGGCTGGCACTGAAGCCAGGAGAAAGGTCTACTAGTTCCTACAAGCAATGCTAAAATACTTAGTTCTATTTTTACATT GTAATTGCTTGAGACAATTGACAAACCTGATTTCACTGGTGTGTTTGCAGTTGACAAGGATAATAGCGGTTATCCCATTA CATAACATGCAGCTATACATGCTCCTATACAAATATTAACTGTCAATGTACAAATTTGATAAGCA
CDS sequence (LotjaGi1g1v0788900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCTTTATGGATGCCCAATTCTTGAAATTCTGGAAGCAAATGATGTAGTCTTTTATGACTCTTTATTCCAACG GAAATTTAAGAGTTTATCCAAGTTGGTCAGAGCAGAGGTCTTTAAACTCAGCTGCCATCTTGAGGTATTTTTTATTCCGA TGGAAGTTTTTTCTAATGTGAAGTTTCTGAGCTCAGACCAGTGGTGTGGTGAAGACATTCCTATGTTTCCCAATTTAATT CATCTGGAGCTCATTAACGTCGAACTTAAGCTATATATACTCAATTGCAGCCCTAACCTTCAAATATTTGTCTTTGATTT CAAAGATTCTTCTTCTGAGCATTGGTTCGTTCCGGAATGTTTTTCTTCACAGCTCAAAAAGTGTGTTATTGCAAATTATA CAGGCATGGCAAATCAGATGAGATTTGTTAAGTATGTTATGCAAAATTCAACATCTTTACGCACCATGACAATAAGTTGC AGTAGTGAGGATCAGCAGAAAAAACTTCAAATGTTAATAGAATCATGCCCGCGGAGCTCTGCAACCCTGTCAACTTTTAT TTAA
Protein sequence (LotjaGi1g1v0788900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFLYGCPILEILEANDVVFYDSLFQRKFKSLSKLVRAEVFKLSCHLEVFFIPMEVFSNVKFLSSDQWCGEDIPMFPNLI HLELINVELKLYILNCSPNLQIFVFDFKDSSSEHWFVPECFSSQLKKCVIANYTGMANQMRFVKYVMQNSTSLRTMTISC SSEDQQKKLQMLIESCPRSSATLSTFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 184 | 182 | 2.1E-28 | – | |
| PANTHER | 3 | 184 | 182 | 2.1E-28 | – | |
| Pfam | 116 | 158 | 43 | 2.6E-14 | ||
| SMART | 119 | 187 | 69 | 9.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0788900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…