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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0792500 |
| Transcript ID | LotjaGi1g1v0792500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1442 family protein; TAIR: AT2G45360.1 ankyrin repeat/KH domain protein (DUF1442); Swiss-Prot: sp|Q50758|HMD_METTF 5,10-methenyltetrahydromethanopterin hydrogenase; TrEMBL-Plants: tr|I3SEX8|I3SEX8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0792500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136420593..136422651) extracted from Lotus japonicus Gifu genome v1.2.
CCTATGTTCGGTCCCTATACGCGGTTTTGACTACGGTTTGTGCGTAACCCCGTTTAGCAAACGCGTACAAACACAAGAAC AAGTTCATTTCTCATGAGACACAAAAGCACATAAATAAGTTCCACACCACCTAGTAGCAAGACAACATCGTTTCAGGACC AAAAGTAAATGTGTATTTCTAGTTTGCATTCACTTTCATTAATTTACTTCAAAGATTCGTTTGTTTTTCATGATGGAATG GTCTGCAACATGCGCTACAAGGGCTTACCTTGATGCCCTTCAACTGGTATTAATTCCTTTTTACATTCTTTTCTTATTCA TATATCTGGTTCTTCCATAGTTCTTACATTTTTAACAAGCACCTTCTTCCATTCTTCCTTTTAATTTTCTTCATCCTTTT TCTCGGACAACAGAAGGCATGAATCAATGATCAATCCTGATTTTCAATGTTAATTGTATAAAATATAGAGTAGGTTGTTT CATTGAATGTCTGGCTCCATGAGATTAGGCAATTGAATTGAATTTTATAATGAATACAATAAAGCATTGATGTTCTTTTA AAATGTTTGTGTATTTGATTTATAGTGTGCTCAATGCTTAGGAGTTTTGTGTGTTTGGATGTTCTTGAATTCAATGGTGA CAAAACAAAATAGCTAAGGTTGTGTTTGGTCATCCATAGATGTCTCAGGGGCACTTCAACTCTTATAAATTGGCTTAAAA GTCTGTTTATGTTGCATTGATTTCCAAACATACACTAACTCATCTAATACCTTGTTCTTGACAGTGTAACAATCATAAAA GACTAAATGGATTTTGGAGAGTGCAAGAGCCTGGAAGCAATGAATTTCTATCAGCATTAGCAGCAGGGATGAAAGCCAAA CTCATAGTGGAAGTAGCATTCGGTGCATCCCCATTAACAATAGCCCTTGCAGCCGCTGCGCGACAAACCGGGGGAAAGCT GGTCTGCATTCTCCCGGAGCCAGTCCTTGATGAGTCAGAAGAAGTTATTAAGAACTCTGGGCTGAAAGACCAAGTTGAAT TCAGAACTGAAGACCCTTCTAAGCTATTGCCTTCCTATGAAAACATTGATTTCTCCCTTGTTGATTGTAAATATGAAAGC TATGGAAGGTTGCTCAGCTTGCTAGATGTCAATCCCGTGCGATCGGTGGTGGTGGCAAAAAATTTGGTTGGTGATAGAAA AGGGTCACGAGGCTACGTGAGAACTAAGGATGATGAAGTAGAAGTAAGGTCTCTAAAGCATCCTATAGGGAAAGGCATGG AAGTTACACTGATTAGCAAGAATGATGAAACTGACAAGATAATTGGGGTCAGAGGCCATGGTAAAAGAAGAAGAAGCAGG AGCAGGTGGGTTGCCAAGTTTGATGAGGAGAGTGGTGAGGAACATATATTCAGGGTACCACAATTTGACATGTTTTGGAA TTAAATTGCCATTGTGGTTTCAGCTGTATCGCGGAATTGCGGACAAATGCGGGTTGATGTGGCTGCATTTGTGGTCCTGA TATCAATGTGGTGACTCCAAAATCTGTTACGTTGAAACCAACTACTACTAGGAAATAATTGCAACTTTATAGCATGTTTA TAGTGGTGGTGGTACATAATCCAAAGCATGCCAATTTCAAAAACTACATTTTGTTTGTAGCTTAGTGATTATGTTCCCAC GGCTGAACCAAACACGCTATTAGTATATGAAGTTGTCCATTGGAGCAGAGCTCATGTATGCTTTTTATAAAGCAGTCTTT TGAGTCTGTATTTTAGCATTAGTAAGAATAAGTATACGAAAAATGTATCGAAAGGTTTATAATAAACCGAACCTAAGAAG TGCAGGGCTTGTGTTCATCAAATGTTCCAGCGCATAATGCTACATAAAGTTGATGGCTAATAGGAAATTAAATACCATAA CAGTGTCTTTTATAGGATGAATTGAAACATCAAACATGGACTAACAACCTAGTTGGATGCAAACCAAAGAGCACCTATTG GACCCGTCTGTATAAGTCTGTATCCAAACAGGCTATGAGCCATTTAACCTGTCTCGTCC
CDS sequence (LotjaGi1g1v0792500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAATGGTCTGCAACATGCGCTACAAGGGCTTACCTTGATGCCCTTCAACTGTGTAACAATCATAAAAGACTAAA TGGATTTTGGAGAGTGCAAGAGCCTGGAAGCAATGAATTTCTATCAGCATTAGCAGCAGGGATGAAAGCCAAACTCATAG TGGAAGTAGCATTCGGTGCATCCCCATTAACAATAGCCCTTGCAGCCGCTGCGCGACAAACCGGGGGAAAGCTGGTCTGC ATTCTCCCGGAGCCAGTCCTTGATGAGTCAGAAGAAGTTATTAAGAACTCTGGGCTGAAAGACCAAGTTGAATTCAGAAC TGAAGACCCTTCTAAGCTATTGCCTTCCTATGAAAACATTGATTTCTCCCTTGTTGATTGTAAATATGAAAGCTATGGAA GGTTGCTCAGCTTGCTAGATGTCAATCCCGTGCGATCGGTGGTGGTGGCAAAAAATTTGGTTGGTGATAGAAAAGGGTCA CGAGGCTACGTGAGAACTAAGGATGATGAAGTAGAAGTAAGGTCTCTAAAGCATCCTATAGGGAAAGGCATGGAAGTTAC ACTGATTAGCAAGAATGATGAAACTGACAAGATAATTGGGGTCAGAGGCCATGGTAAAAGAAGAAGAAGCAGGAGCAGGT GGGTTGCCAAGTTTGATGAGGAGAGTGGTGAGGAACATATATTCAGGGTACCACAATTTGACATGTTTTGGAATTAA
Protein sequence (LotjaGi1g1v0792500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEWSATCATRAYLDALQLCNNHKRLNGFWRVQEPGSNEFLSALAAGMKAKLIVEVAFGASPLTIALAAAARQTGGKLVC ILPEPVLDESEEVIKNSGLKDQVEFRTEDPSKLLPSYENIDFSLVDCKYESYGRLLSLLDVNPVRSVVVAKNLVGDRKGS RGYVRTKDDEVEVRSLKHPIGKGMEVTLISKNDETDKIIGVRGHGKRRRSRSRWVAKFDEESGEEHIFRVPQFDMFWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 232 | 231 | 9.1E-100 | – | |
| PANTHER | 2 | 232 | 231 | 9.1E-100 | ||
| Pfam | 4 | 229 | 226 | 2.3E-25 | ||
| Gene3D | 6 | 189 | 184 | 2.9E-16 | – | |
| SUPERFAMILY | 35 | 186 | 152 | 2.65E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0792500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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