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LotjaGi1g1v0795600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0795600
Transcript ID	LotjaGi1g1v0795600.1
Lotus japonicus genome version	Gifu v1.2
Description	Auxin-responsive family protein; TAIR: AT2G46690.1 SAUR-like auxin-responsive protein family; Swiss-Prot: sp\|Q9ZUZ3\|SAU32_ARATH Auxin-responsive protein SAUR32; TrEMBL-Plants: tr\|A0A0L9VQ38\|A0A0L9VQ38_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0795600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:136631051..136632603) extracted from Lotus japonicus Gifu genome v1.2.

TGTCCTTGATCGTACGGCAATAAAGTCATTCTAGAAAGGTCAGCGTTGCATCTGATTCTATCCAGGTAGGGTTATAGGGA GAGATCTAATTGCTGGGTCCACATAAGATGCTGATCATAACCAAAGCCACCAAGATCCAACGGTGAAGAAAGCAAGTGAG TAGAAAACCTAAATGATGTTGTTCACACAGATACACAATCTCTGTTTCTCTTTTTCTGTTCAGTCTGTTGTCGTATATAT CTGCCCCTTAATCACGGTGCTTGCTTGGAATGCGTTTCTGATTTTGTTGAAGAAGAACAACAACCAACCATGACTGCTAC TACCACTGCTACTGATAACGTTTCAACGTCTCTCATTAGATTTTCATATCTCACTCTTGCTCCTTTCAACAAACCAATCT CACTCTCAAATCCTCTGTTTTGAGATCCATTCACTACTCTGTTTTTTTTTTCTTCATCTTCTCTGTTTTTTCTTCTTTTG AGGTTTGTTAATTGCAGAGATGGGTGGTGGGGAGAAGAGTGCTCTCAAGGGTTTCAATTTGCATCGCCACCACCACCATG GCCAGGGGAAGAAGCAAGAGACCAGCGTGCCAAAAGGGTGTATGGCAGTGAAGGTGGGTCAAGGCGAAGAGAAACAGAGG TTCGTGGTGCCGGTGATGTACTTCAATCACCCTTTGTTCATGCAGCTGCTGAAGGAGGCGGAGGAAGAATACGGGTTTGA TCAGAAGGGAACAATCACCATCCCTTGTCATGTCGAGGAATTCAGGAATGTTCGAGGTTTGATTGATAGGGAAAAGTCTC TCAACCACCACCACCATCATGTTGGCTGTTTTGGCTTCTGATTCTGATCAAAACCTAGATGATGATGATGAAAATGCTGT AAATTCTGAATTAGTTTTACTTTTTTACTTTGTTAGTTGAGTGGTGATGAACTGATGATGGTAGAGAGTTAGGGATGAGA TGATGATGATGATGATGATGATGGCGACAAATGTTGTTGTTATTTGTTCCATTTGTAGTTACTTTGTTATAGTTTTGTTA GGAGTGGAAATGAAAAAAAAGATGCTTCTTCTTTCCTTTATTATTTCTAGAAGAGTTATATTTAGTGGTAATGGAATAAG AGGCACTAGTACTGGCACTCTTTGGAAAAGGAAAGAGTGGAAGAGAAGGAAATGACGGTCGATGTTGTGTAGGGTCAGCC AAAACGGTTTCTTTCTTTCAGTGAACAAGAGAAGAGGTTCACTCATTCCTTCTTCCTTTTACTACCTTGGAATTGGAACT GAAATTTCAATTTGTTGGAATTGGAACTGAAATTTCAATTTGAAGAGACCCTTATCCCACGTGAACTTTACGGGAATAGT AATACAAAATGTGGACCATTTCTGGCTCTCAAATCTCTGAGATTGATTTCTTTGGAATGAATGGAAGAAATGATAAGCAA GGGTGTCAGTTCATTTTACTTCCTTTGGGTAAAATTATTTTGTTCACACCCCAACACAAAGGCATAAAAGTGAGAAGTGA AAGATATGATTTGTGATGTGATAAGAAAAAAAG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0795600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGGTGGGGAGAAGAGTGCTCTCAAGGGTTTCAATTTGCATCGCCACCACCACCATGGCCAGGGGAAGAAGCAAGA GACCAGCGTGCCAAAAGGGTGTATGGCAGTGAAGGTGGGTCAAGGCGAAGAGAAACAGAGGTTCGTGGTGCCGGTGATGT ACTTCAATCACCCTTTGTTCATGCAGCTGCTGAAGGAGGCGGAGGAAGAATACGGGTTTGATCAGAAGGGAACAATCACC ATCCCTTGTCATGTCGAGGAATTCAGGAATGTTCGAGGTTTGATTGATAGGGAAAAGTCTCTCAACCACCACCACCATCA TGTTGGCTGTTTTGGCTTCTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0795600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGGEKSALKGFNLHRHHHHGQGKKQETSVPKGCMAVKVGQGEEKQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTIT IPCHVEEFRNVRGLIDREKSLNHHHHHVGCFGF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	30	30	-	–
PANTHER	PTHR31374 View details on PTHR31374 Search for proteins/transripts with this domain View external data on PTHR31374	12	104	93	6.9E-52	–
PANTHER	PTHR31374:SF145 View details on PTHR31374:SF145 Search for proteins/transripts with this domain View external data on PTHR31374:SF145	12	104	93	6.9E-52	–
Pfam	PF02519 View details on PF02519 Search for proteins/transripts with this domain View external data on PF02519	22	91	70	1.8E-24	IPR003676 Show description in modal box View details on IPR003676 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0009733 View details of GO:0009733 AmiGO InterPro QuickGO	Biological process	Response to auxin	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.	Subterm of View details of GO:0009725

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0795600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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