Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0799100 |
Transcript ID | LotjaGi1g1v0799100.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | muscle M-line assembly protein; TAIR: AT1G53800.2 muscle M-line assembly protein; Swiss-Prot: sp|Q2GGC4|Y704_EHRCR Probable transcriptional regulatory protein ECH_0704; TrEMBL-Plants: tr|A0A0B2Q9C4|A0A0B2Q9C4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0799100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136954107..136958541) extracted from Lotus japonicus Gifu genome v1.2.
GGTCCTTAGCAGTTACTTACGACGTTATCCAAATTCGCTTGGTTGGTTATTCTTCCTCTCTCTTTGTCTCTGCTACTGAA ATGCTCTTTTATCTCTATCTCTCTATCTATCTATCTATCTATCTATCTGGGATTCCTCTAAATTAAACTCGCACTCTCGC GGAATCACCTCTCATGCCTTTGCTTGGTTGGTACCTTCTTCTTCTTCTTCTTCCACTTTTCACTCTCATTTCAATTCTTT GTTTTGTGTTATTGTTATCATATCCATGCTGCTAGGTCTGGTTCTTATCTTGTGTTTTGCGGTCAGCAGAGATGACACTG AGGGCGCCTATGCCTTCTTCATATTACCATGCCGGAAGAGACTCAAGTTGGAAATCCATGGACTTTGACAAGCTTCAAAA GGAGAATTTCAATGTCGGCCGCCTTAACTTGAACAAGTTTCCATTCCTTATTAAGGCAGTTGCTACCTGTGAACCCGACA CTTTGCTTCCCAAACACGACAAATGCGACCTGCTTCCCAATCCTCACTCTTCTCTTGATTTTTCTGACGACGAACCAGAA GTTGCTCTCCAGGACTGCGAAAAGTTGAGAAGAATGAGGATTTCAAAAGCTAATAAAGGCAACATGCCATGGAACAAAGG AAGAAAGCACAGTGCTGGTAATCTTTCCTTTCTACTTCTACTCACTCCTCTCTCTCTCTGTCTTTATTTTTGTTCTAATT TTCAATGTATGAGCAGAAACTATTCAGAAAATCAAGGAAAGAACAAGGCTAGCAATGCAGAATCCTAAGGTGATGTCATG TAAGCATGCTATTGTCTTTATTCAACAACATTTTCATATTAACTTCTTCAAAACATGCATTTTATTTTAATTTCAAATCA ACATCGCTTACACACTTGTTAGAATTATACAGGCTCAGCTATCACTTTTTGTGCTCAAAGAAACTGCTCTTAATGGGGAA AATATGCAAAGGATTAAAGCTCAAGAGAACACAAGTTTGAAGAAACCATTTATATTCTCTCTTAGTGAATGGCCTGCCAT TTTTTATATAACTCCTGCTGAAATCACAAATTTAAATAAAATGCATTGCAAAAATAACTAGTCAACAGCAAGAATTATTT GTAACTATTTTTTCTTACATCAGCTGCTAGGGGCACAATTTTTTAAGTTCTCAGTAATTTGCAGAGTGAAACTTTTCATA TTTTATATTGACCTGGATTGGATAGCCAAATTGAGCTTTTCAAAGCACACTTTATCATCCTCTATTTGTCCCTGCTGTCA CTCAACAGTTTCTTAGTATGTTGTAACTTTATAAGTAGGTATTTTCAATTTGGACTAGTTGTATCATAATCTAGGATTAC TTGTAGATGAAGATATGGAATTGTTATTTGGATTTTTCAACTTTTGCTTATATAGTTATCTTAATTGCTTTCCTTAATGA AATTCGGTAATGCAGGTCAAATTGAAGTTGAAGAATCTCGGGCATGCACAAACGTAAGCATATGCCTTCCTATGATCATT GTTGTTATTGATAAGCATATGCCTACCCATAGAATTTTACTGAATTCAGCCTTCTTTATTGGTTGCACAGCACAGAAACG AAACAGAAGATTGGTGCTGGAGTGAAGTTGCGATGGGAAAGGAGGCGTGGAATGAAGGTGGTACAGGAGACTTGCTGCTT TGAGTGGCAAAATTTAATTGCAGAAGGTTCAAGGCAAGGCTATGTTGGTCAGGAAGAGCTGCAATGGAATTCCTATGAAA TCTTGGATGAACAGTTGAAGCAGGAGTGGTTGGTGAGTATTGATCAAAGGAAACGAATGCCTGGGGCACCAGGCAGCAAA AGAGCGCCCAAGTCCCCTGAACAGAGGAGGAAAATTGCAGAAGCCATTGCTGCAAAATGGGCTGATCCTGTAAGTATATG TGTAATACCTTGAAGTCGTGTGGTTTATGGTTTTTGTGGTAACTAAATGTTTGCACCATCTTGTGCTCAATTGCACACTA TTATATTCTCATAAGTCATAAGACCATAACTTATTAGTTGTGTGTGATTGACTTCAGAGAAGTTAACACTGTATGTGTGT ATCAATTTTTGGTGTCACATCTGTTGATTGAGTTTGTTAAATATAGAGTTTGTTGATTGAATATATTTGATTAGGATAGA GCTTCGTGTGTTATGAAATATAAATTTTCTTTAAAAATAGTGATGAAGTTATAGATTAATTAGGAGTTATTAAATTAGTA GTTTGTTTTTCATCTTTATAAAAAAGGATTATGCTTTGAGTGAGTTACTCTCAAGCAATTCTGTTAATCATTTCTCCATA CGCATATGGTACTAGAGCTATCAGTCTGGCCCGGTTCCTAAAAAACTAAAAACCCTAAAATTCTTTCTAGGATAAATGGA AATATGAAACATTTTCTCAAACCAAACACACCCTAAGATTTCATATGTTGCGAGTCTCTCGTAGTTGATTTCCGTAAGCT ATCTTGATTAATTAGAATTTGAGGCTGAATAGTAATATAAGTGTTTTTAGCAGTACAACCTTCCATGTTGACCTGTTTCA CAAACTGTCTTCCAATAAATACTGAATATTGTTAAAAAGTAAGGCCCAGAGTAGGAATGTTTATATAAAAAGTGAATATT GTTAACTACTAAATACTGTTGTTGCCTACGGAAAGTCATTTGTGATTGGCCTGTATTATGAAAAAGTGAATGTTGATATG CATGTCTTTACTCCACCCTTTAAATCAGGAATACCGCGACAGAGTTTGCTCTGCATTGGCCAAGTATCATGGCATTGAAG CGGGTGCTGAAAGGAAACCTCGAAGAAGACCAAGTGATGTTGCACGCCCTGCCAAGAGAAAAACAACCACTGATTCTGGC GATAGATTAAAGTCTGGCCCCAAAATTCTTAACCCTATTCGACTCCGAAAAAGCAAATCCCCTGCCTATATAGATCCTTT GGTGAATTCCAAGCTTGAGATGATAAAGAACATTAGAGCACAGAGAGCTTCTGAAGAAACCAGACAAACTCATGCCATTG AACGAGCAAGGTAAACCCATCTTATTGTGATCAGTGGTAGAATTTATATTATGTTACTGTGTTCTTTCTCCATTTTTCTG TCAAAATTAAAATTTGGTACCTCTGAGTTCTGATGAACTTTTTTTAATGTGTATTTTGAAGTTAATGGCGTCTTTGTTTC TATTGATTACTTATGCTTTTGTTTGGAAAAAATCATAAATGTATGCTTTTACTTTATTTGGTTCCAACTGCAGCAGTTAT GCCGTATATATTTCAAGAAATAATATGTTATCACAGGCTATTGATTGCTGAGGCTGAGAAAGCTGCCAAGGCTCTTGAGG TTGCTGCGACAAAGAGCTCCATTGCACAGTCTTCTCTCATAGAAACCAGAAAGCTTATAGCTGAAGCTATTCAAACACTT GAATCCATTGATACACAAGGTGTAACTGAGAGTAATGTTCCTTCGGTGGGTTTGGATGAGATCAGTGAGGAAAACGGATC AGCATTCAAAGTTCTAGACCAATCCCAAATGGCCCAAGTAAATGGACACTCGACATTATCATCAAGTGACTACAAGTTCT CTGAAGATTTTGGTGAGTTTCCCTTGGAGAAACCAGTTATTGGTGATCAAGAACTTCACCTAACCAATGGCTGTGCTTCA CTACCTTATACTTTAATTAGCCAGATGAATGAATCTAGTCCATCAAATGAACAAAGGGAAGCAGAACAGGATCATTGCAG TGAACGCAAAACAGATCCCTCTCCAACTGTGATGGGAACTCAGTCTCTTGAAGATGGGACACTATCTAGATCACCTACTG TAGTAACTAGAAAGTGGGTTCGCGGAAGGCTCGTTGAAGTGGCTGAAGAGGAAAAATAAATTGTGTAAAGCTTAGCTCAG TTTTCAAACACAATACATAGCAATGCCATATCTTTCGCTGCATGTTATGTAGATCACCATAAGTACCACATATTTTTATT CCTTGACAGTGTTACAAGTGCTATGCTGCACTCATTCAAATCATGATTTGCCTCCTATCAGCGCTGCAGCACCCAACCAC GTGTAGGAAGGCAGGTGCACTTCTGTCAGTTCACTAGATTTTCTAATTCAGTTAATCATGCTACGTTAAACTATGTATCA ATCATATGAATATTTTGTTACATTATAGCTTTGAGTTGGTTTGAGTACTTAATGCTGTAGTTTCGCAGCAACTGCAGAGA TTTGAGTGCCAATTGCCTCTCAGCCAGGAAATTCTATTGTAAGAGGGAGGTTGCATGGGTTGACGAATTTTAGTTCTACA TTTCTAGAAAGAAAGAAAGAAAACTAGATATAATGTTGAATAGTTATGATTATAGATAGATAACCTGTTTCAATTGCGTT TATACTCTTGGAAGTTACAAATACAAAAAGAAAAC
CDS sequence (LotjaGi1g1v0799100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACAAACAAACGAAACAGAAGATTGGTGCTGGAGTGAAGTTGCGATGGGAAAGGAGGCGTGGAATGAAGGTGGTACA GGAGACTTGCTGCTTTGAGTGGCAAAATTTAATTGCAGAAGGTTCAAGGCAAGGCTATGTTGGTCAGGAAGAGCTGCAAT GGAATTCCTATGAAATCTTGGATGAACAGTTGAAGCAGGAGTGGTTGGTGAGTATTGATCAAAGGAAACGAATGCCTGGG GCACCAGGCAGCAAAAGAGCGCCCAAGTCCCCTGAACAGAGGAGGAAAATTGCAGAAGCCATTGCTGCAAAATGGGCTGA TCCTGAATACCGCGACAGAGTTTGCTCTGCATTGGCCAAGTATCATGGCATTGAAGCGGGTGCTGAAAGGAAACCTCGAA GAAGACCAAGTGATGTTGCACGCCCTGCCAAGAGAAAAACAACCACTGATTCTGGCGATAGATTAAAGTCTGGCCCCAAA ATTCTTAACCCTATTCGACTCCGAAAAAGCAAATCCCCTGCCTATATAGATCCTTTGGTGAATTCCAAGCTTGAGATGAT AAAGAACATTAGAGCACAGAGAGCTTCTGAAGAAACCAGACAAACTCATGCCATTGAACGAGCAAGGCTATTGATTGCTG AGGCTGAGAAAGCTGCCAAGGCTCTTGAGGTTGCTGCGACAAAGAGCTCCATTGCACAGTCTTCTCTCATAGAAACCAGA AAGCTTATAGCTGAAGCTATTCAAACACTTGAATCCATTGATACACAAGGTGTAACTGAGAGTAATGTTCCTTCGGTGGG TTTGGATGAGATCAGTGAGGAAAACGGATCAGCATTCAAAGTTCTAGACCAATCCCAAATGGCCCAAGTAAATGGACACT CGACATTATCATCAAGTGACTACAAGTTCTCTGAAGATTTTGGTGAGTTTCCCTTGGAGAAACCAGTTATTGGTGATCAA GAACTTCACCTAACCAATGGCTGTGCTTCACTACCTTATACTTTAATTAGCCAGATGAATGAATCTAGTCCATCAAATGA ACAAAGGGAAGCAGAACAGGATCATTGCAGTGAACGCAAAACAGATCCCTCTCCAACTGTGATGGGAACTCAGTCTCTTG AAGATGGGACACTATCTAGATCACCTACTGTAGTAACTAGAAAGTGGGTTCGCGGAAGGCTCGTTGAAGTGGCTGAAGAG GAAAAATAA
Protein sequence (LotjaGi1g1v0799100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHKQTKQKIGAGVKLRWERRRGMKVVQETCCFEWQNLIAEGSRQGYVGQEELQWNSYEILDEQLKQEWLVSIDQRKRMPG APGSKRAPKSPEQRRKIAEAIAAKWADPEYRDRVCSALAKYHGIEAGAERKPRRRPSDVARPAKRKTTTDSGDRLKSGPK ILNPIRLRKSKSPAYIDPLVNSKLEMIKNIRAQRASEETRQTHAIERARLLIAEAEKAAKALEVAATKSSIAQSSLIETR KLIAEAIQTLESIDTQGVTESNVPSVGLDEISEENGSAFKVLDQSQMAQVNGHSTLSSSDYKFSEDFGEFPLEKPVIGDQ ELHLTNGCASLPYTLISQMNESSPSNEQREAEQDHCSERKTDPSPTVMGTQSLEDGTLSRSPTVVTRKWVRGRLVEVAEE EK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 401 | 400 | 3.6E-116 | – | |
PANTHER | 2 | 401 | 400 | 3.6E-116 | – | |
MobiDBLite | 75 | 94 | 20 | - | – | |
MobiDBLite | 126 | 153 | 28 | - | – | |
MobiDBLite | 126 | 161 | 36 | - | – | |
Coils | 205 | 225 | 21 | - | – | |
MobiDBLite | 340 | 382 | 43 | - | – | |
MobiDBLite | 347 | 361 | 15 | - | – | |
MobiDBLite | 363 | 382 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0799100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…