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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0001500 |
| Transcript ID | LotjaGi2g1v0001500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein isoform 1; TAIR: AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|C6TI28|C6TI28_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0001500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1013157..1018793) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTGGGTGCGGAGGAAGGCGTTTCACAGCAGGTTGTTCCATCTTCTGTTTTGGTCCTTACTTCTCGGGGTATGCAGAT GTTGGTTCTTCACGTTGGGAGGGTGCTTCATCTAATGATTTCCTGATTAAGGTTACTCTTATTGACCTTAAACCTCGTAG GCGTGTTGTCCTAAACACACAAAGGCAGGTTGTAAGCCTCGTTTGATGTCCCCGACCAATTTTAAGGATTGGTTACAACT GAGGATGGTAGTTCTTTTTATGTTATGGCCACGCCCTTAGCTTCTTTTTCATGGTTTTTTTGATCTAGCTTTATGTTTCT TTTGGGTTGTGTATTGTCGTAGAAGAGCTTTCTTTTTTATACTCTTTGGCTTTGTTCCATGATACTTGATTTTGTATATT TTGGTTTCTTAATGAGGTATGCACTTAAGGTCCTTTGTGGGGGGGGGGGGGGGGGGGGTCATGAAGCCGTCTTGCAGAAG CTTGTTTCGTCTTCTATTTCAGTTCTTACTAGGTATGGCAGATGTTGGTTCTTCGCGTTGGGAGGGGGCTTGATCTGATG ATTTTTTGAATAAGGTTACTCTTAAACCTTATGGGCGTGGTCGTTCGGAAAAAAACCAAGGAAGGTCGTAAGCCTCGTTT GATATCCCCGACCAATTTTGAGGATTTGAGTTGATGAGGATAGATCTTTTTCTGTTATGCTCATGCCCATGGTCTTTTGG TCTAGCTCTCTATTTCTTTTGGGTTGTTTATTGTTGTGGAAGAGCTTTCTTTTTTAGGAGGTTTTTGGCTTTGTTCCTTG GTACTTTTATAAGCCTTTTTGTTTCCTAATGAGGGTTTTCTTCTTTTTTAGGAGGTTTTTCATGAAGATGGATGAAGATG AAGAATAAGAAGGATGAAGATGATTAAAGTTATGTTTGTTTAGTTAATTTAGAAATAAATTAGTTTAACTAACTAGAATT AAGAGTTTTTTAACGGCCAAATATCTCCTCCAGGGATTCGATCCCAGACCTGGATCCCTTCTCTCCCCAATTCATATGTC CCTCAGCTCTTAACACTTGAGTTATAATTCAATGACTGAATACAAGACCACTACACCATACCACAATTTGTTTGAATTAA GAGTTTTTGCAGAGTTCCAATCAGGTTAAAAACATAATATTCCTCAATTTCATTGACAAAAAAAAATTCCTAAATTTTTT GATTGTTGAAGAAACTTGAACCGATTGAGAAACTCATGGATTAACATGTTTATTATTTAGTTTCAAAAAAAAAAAACATG TTTATTATTTATTATTTACCCCTCCATTATATGTCCCCAGCTCTTAACACTTGAGTTATAATTCAAGAATGCAAGACCAC TACACCAGACCACAATTTGTTTGAATCCCCCACCCCACCCCCATACCCACTCACATCACACCAGAAAACGAGTGACAGAT ACACAGTCACAAGGAAACGCTATTCCTTTTCTGAAATTACGTAATCACCCTTACCGTCCTGCTCCTTCAAAACAAAAACT ACACATTGTCAACCTGGTTCCGACAAATTCACGTCGTACCATCCGAGATGTCGGTGAGTTTCATTTTCCTCTTCTCAGAT CCCTTCCCCTTCCCCATTTCGTGTGTTAATTTTGTTCCTTGAAGTTTCTTATCGTTTCAGATTCTATGTGGGTTTCTTCT CTTTAAGTTTGTTTATGGCGCATTGTGTTGCGTTTTGGTTCTGCTTGGATATGAAAATCCTTGTATTTTGTCAAATGGAA AATGGGAACTCTTCTTTGATTGATATATTAAATTTTCATTCTTGGAAATTGTTAAGTGATATATGACCATATCCATGAAT GGTTTTATAATTTAGATGATGTAGTTTATAACTATAAGTCTATAACTGCTCTTCTTGAACTTGAAGCAATAGGTACTGCT TTGGGGGTTTGGATCTACAGTGATGGAAGTAGCAGTATTATATTTTTCCCTCCAAAAAGGAGAAAACTTTGAGAGTTGGT TCTGTACCTGTTCCTGTTATAGTGTTATGTGGTTCATTCACCTATTGTTGATATACATGATTTGAATTGATTCACTCTGA CATTTGAATTGCTTCAATTCAAGTGGAACCCTATGAGGTTCAATACATGTTAAGTGATTCATTCACCTGTTGATGAATGA TAATACATTTTGGAATTGATTCATATTGTCATTTGAATTGGTTCTTTCCAAGTGAAACCCTATCACATTGATATTGTCTC TTAGTATAACGTTCCCGCTTGGCTTATTAAATTTTTGTTCAATTGCTTTGTCTTCTGAGCTATGAGGATAGTGCTGCTAC AGTGCTACTCATTAGGCTTTTGTATCTTGCTGTCATTCTTTCATTTAGTTCTTAGTTCGACCGTTCTTTCCATTATTTCA AAGTAGAGATGGGTTTCTATTTCTATTTGACTAGTTGATCTCATTTTGCACATGGCCTTGCTTCATGGTTCTCCCTACTT TACAGAATGCCATCCTTGATATTTACTTTAATTTTACATTTTACGTATGTGCAGACCGTAATGGACCATACGGATCAAAG AGTTGAAGCGATTTCCCACTCTACAGCTTCACCAAATCGGACTAATCATGTTTCAGATGTGAGGAAGAAATTTTTACATA GTAAAATTGGTTACTGTTAGCACTATGATAGTAGAATAGATGGGTCGGGAATGAATACTAGGTTCCCAGTGTGGATTCCT ATTCCCTGCTCACAGCATTATAAATGTGCATCGTAGTAACTGCATTTCAAAACTGGTGATATATATTACAATTAAGACTT ATTAACACGTCCCTGCCCACTGTGTTTTGTTGCTATTTTAGCTGTGTCAATTTTTCTTAGTAGTATCGATTTCTGATATT CCTCGATGGACAAATTTCAAAGTTCATTCCATTTTGATTTCAGATAAGTACAGTCAAGGTTAGCAACATATCACTGATGA CTTCCAAGAAGGATATTGAAGAATTCTTTTCATTTTCAGGTGATATTCAATATATTGAGATGCAAAGGTCAGGGAACTTG CAATTTATCTTTATTCATTTCTTATGATTGTTATTGTTTTATACTAAATGTCACCTGAATATTTTGTTGTCATTCTGCAG GGAATCTGATCGCACCCAAGTTGCTTATGTTACTTTTAAGAATTCACAGGGAGCAGAGACAGCAGTTCTCTTAACAGTAT GTTTATATGCAAATAACTTTTTGTATTGAAAATCTTACTGAGAGCTTTGCACCAATGTATCTTATCTATTATTTCCATTC AACTATTCAAGCACTAAAACTGATAAAAGTAAGATAGAAAGAAACAGAAACTTAGTTTTTTATATATATATTGAAAAGTC ATGTACTTATTCTTGAATTTTAATATAGGGTTCCAAGATAGCTGACCTATATGTCACAATCACACCTGTGGAGAAGTACC AGCTTCCCCCTGATGCTCTTCCCTCAAGTCCAGTAAGTACTCAATTGTTTGTTCATTCTGATATTCATTGTGCTGCAGTT AATCATGCGAAATATAAACTCTTTTGCTTATCATGCCTGAACTATGTGCCCAAAATATAAGTGTCAAAGTATACATAGAA TGTGTATTTTTAATACATTTGACATTAAATTATTATTGTTGACCGACTTGTAGGATATGAAACATATGGCTTCACTGTAG CAGCCAAATTGTATGGTGCTTAATATCTTTGTTTGGGTATGATATCAATACATTATTTTAGATTTGGGGTGCGTTTGAGT AAACAGGTTAATTCAGCGCTTATCGCATATGTGCTTATCATAAGCTAATTTCCAAAGCTTATTGAAATATACTCAAAATA AGCTTTAAGTATGTGTAAACGCTTATCTATAAGATAATCTAAGCAGCTTATGAAAATAAGCGCAACAACTTATAGGTCAT AAGTTATTTACATAAGCTCTCTCTAACACGTAAGATAAGCTCAAATGATGGTAGGTAACCACCCCTTTACTACTTGAGTT AGTTAGTCCGTTAGGGAAGTCATGTGGGTAGTTAGTGAATTGGTTAGAGATTAGAGAGAGTGAAGAGAGACTATAAATAA GAGGGTGAGGAGAATAGTGAGGGTATTTTGTTTGTAATTGGGAATTTAGGGAGAGTCCTGGTCTCTCGAATACCAGGGAT TTGTGTATTTTTCATGTCATTCTTTCAATAGTATTCAGTATCTCTCTTTGTTCATAGCTCATAGCTGGTACCTATCAAAT AAGCTCTTCCAAACAGGGCCTTTCCTTGTTTTGCTGTTGATATTGGCAACTTTTCTGCAGCAGTGAACTGAAAACAGCTC TGGCCTGAAGATGATGGTGCAATATCTTATATACACCAAATTACTACTTTTGTCCAACCTGATCGAAATTTGCCCTGTTA TAACATTTTCTTGTGAAATTAGATTCATAACTAAATGCCTGCATTGTGGGTATTGTATCTGGTGCTCAAATAAATATACT GTAAACTTTGTACAATCTCTGCATGTATATACTAATTCTTCAGTCCCCAAAGTATACAACAAATGTGTTACAAATAAATT CTCAACCATAAACAACAGGAAATTCGAATTTCTGTGCTATTTATTTCTTAATACCTTTAATGATTCTGATGTTCAATGCT CTTCTTAATAGACAAACCAAAGTGCTGCTGCCGTTAAGAAGGCTGAAGACGTAATAAGCACCATGCTAGCCAGGGGTTTC ATTTTGGGAAAGGATGCAATCAACAAGACAAAATCCTTTGATGAACGCCATCATTGGACCTCAAATGCTTCTTCCACAGT TGCTTCCATTGACCGTAAAATGGGTATAAGTGATAAACTAAGTATTGGAACAGCCATTGTCAATGATAAGGTGAGAGAGG TGGATGGAAGATTTCAGATTTCTGATATGACAAAGTCCGCAATTGCTGTCGCTGAGCAAAAGGCGAGTAGTGCTGGTTCT GCTATCATGAGCAATCCTTACGTATCCACTGGAGCTTCATGGCTGTCAAGTGCCTTCACTGCTATTGCAAAGGCGGCAGA GGATGTCAGCACGATGACAAAGGAGAAGCTTGAACAAGCCGAGGTGGAAAAGAAGGATACCATTTACAATGAAAGGAAAG GGAGTGTTGATGAATATGCACAGATGCACTTAGATGAGTCTTCAGATTGGGGTCCTGCAGTTGTTCCTGTTAATTCGGAC AACGACAGTAAGCTGTGAATTCTATAACTTGAACTCACGTGTGCTCACAAGCACAACGGGATTGACTTAGTTGCATAGTA TTTCTCAATCTTCAGTTGCTGCAAGTTCGCTGTATTATGAAATGTCTTATTGATTGTTTATGGTGATTGTAAAGGTGTAT CTTACAGATGTTCTTCCTATATGCAATCAACATTCATGTAAAATAATTCATTCTTATTTGTTTTTACCATACTTTTGAGT TTTTCCTTCACCTCTCCCTTTAGTTCACATGTTTATGGAGGAGTTTTAAGTGTAATAGCATCAACAATATGATTCAATTT TACAGAACTTCATCTCATGAGGAGCATGGCAGATAAGATAATTCTATTTCTTTTGATTTTCTATTTTTCTCTTCGGTGAT TTCGCATCTATATTTGTTTGTCATGATGAACGTCTTC
CDS sequence (LotjaGi2g1v0001500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCGTAATGGACCATACGGATCAAAGAGTTGAAGCGATTTCCCACTCTACAGCTTCACCAAATCGGACTAATCA TGTTTCAGATATAAGTACAGTCAAGGTTAGCAACATATCACTGATGACTTCCAAGAAGGATATTGAAGAATTCTTTTCAT TTTCAGGTGATATTCAATATATTGAGATGCAAAGGGAATCTGATCGCACCCAAGTTGCTTATGTTACTTTTAAGAATTCA CAGGGAGCAGAGACAGCAGTTCTCTTAACAGGTTCCAAGATAGCTGACCTATATGTCACAATCACACCTGTGGAGAAGTA CCAGCTTCCCCCTGATGCTCTTCCCTCAAGTCCAACAAACCAAAGTGCTGCTGCCGTTAAGAAGGCTGAAGACGTAATAA GCACCATGCTAGCCAGGGGTTTCATTTTGGGAAAGGATGCAATCAACAAGACAAAATCCTTTGATGAACGCCATCATTGG ACCTCAAATGCTTCTTCCACAGTTGCTTCCATTGACCGTAAAATGGGTATAAGTGATAAACTAAGTATTGGAACAGCCAT TGTCAATGATAAGGTGAGAGAGGTGGATGGAAGATTTCAGATTTCTGATATGACAAAGTCCGCAATTGCTGTCGCTGAGC AAAAGGCGAGTAGTGCTGGTTCTGCTATCATGAGCAATCCTTACGTATCCACTGGAGCTTCATGGCTGTCAAGTGCCTTC ACTGCTATTGCAAAGGCGGCAGAGGATGTCAGCACGATGACAAAGGAGAAGCTTGAACAAGCCGAGGTGGAAAAGAAGGA TACCATTTACAATGAAAGGAAAGGGAGTGTTGATGAATATGCACAGATGCACTTAGATGAGTCTTCAGATTGGGGTCCTG CAGTTGTTCCTGTTAATTCGGACAACGACAGTAAGCTGTGA
Protein sequence (LotjaGi2g1v0001500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTVMDHTDQRVEAISHSTASPNRTNHVSDISTVKVSNISLMTSKKDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKNS QGAETAVLLTGSKIADLYVTITPVEKYQLPPDALPSSPTNQSAAAVKKAEDVISTMLARGFILGKDAINKTKSFDERHHW TSNASSTVASIDRKMGISDKLSIGTAIVNDKVREVDGRFQISDMTKSAIAVAEQKASSAGSAIMSNPYVSTGASWLSSAF TAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDESSDWGPAVVPVNSDNDSKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Gene3D | 9 | 110 | 102 | 4.3E-10 | ||
| PANTHER | 14 | 304 | 291 | 1.3E-120 | – | |
| PANTHER | 14 | 304 | 291 | 1.3E-120 | – | |
| SUPERFAMILY | 22 | 108 | 87 | 4.07E-12 | ||
| ProSiteProfiles | 32 | 106 | 75 | 10.838 | ||
| SMART | 33 | 102 | 70 | 4.7E-6 | ||
| Pfam | 36 | 95 | 60 | 2.2E-6 | ||
| Coils | 244 | 264 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0001500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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