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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0001500 |
| Transcript ID | LotjaGi2g1v0001500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein isoform 1; TAIR: AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|A0A072VFR7|A0A072VFR7_MEDTR RNA recognition motif; Found in the gene: LotjaGi2g1v0001500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1013251..1018769) extracted from Lotus japonicus Gifu genome v1.2.
TCACAGCAGGTTGTTCCATCTTCTGTTTTGGTCCTTACTTCTCGGGGTATGCAGATGTTGGTTCTTCACGTTGGGAGGGT GCTTCATCTAATGATTTCCTGATTAAGGTTACTCTTATTGACCTTAAACCTCGTAGGCGTGTTGTCCTAAACACACAAAG GCAGGTTGTAAGCCTCGTTTGATGTCCCCGACCAATTTTAAGGATTGGTTACAACTGAGGATGGTAGTTCTTTTTATGTT ATGGCCACGCCCTTAGCTTCTTTTTCATGGTTTTTTTGATCTAGCTTTATGTTTCTTTTGGGTTGTGTATTGTCGTAGAA GAGCTTTCTTTTTTATACTCTTTGGCTTTGTTCCATGATACTTGATTTTGTATATTTTGGTTTCTTAATGAGGTATGCAC TTAAGGTCCTTTGTGGGGGGGGGGGGGGGGGGGGTCATGAAGCCGTCTTGCAGAAGCTTGTTTCGTCTTCTATTTCAGTT CTTACTAGGTATGGCAGATGTTGGTTCTTCGCGTTGGGAGGGGGCTTGATCTGATGATTTTTTGAATAAGGTTACTCTTA AACCTTATGGGCGTGGTCGTTCGGAAAAAAACCAAGGAAGGTCGTAAGCCTCGTTTGATATCCCCGACCAATTTTGAGGA TTTGAGTTGATGAGGATAGATCTTTTTCTGTTATGCTCATGCCCATGGTCTTTTGGTCTAGCTCTCTATTTCTTTTGGGT TGTTTATTGTTGTGGAAGAGCTTTCTTTTTTAGGAGGTTTTTGGCTTTGTTCCTTGGTACTTTTATAAGCCTTTTTGTTT CCTAATGAGGGTTTTCTTCTTTTTTAGGAGGTTTTTCATGAAGATGGATGAAGATGAAGAATAAGAAGGATGAAGATGAT TAAAGTTATGTTTGTTTAGTTAATTTAGAAATAAATTAGTTTAACTAACTAGAATTAAGAGTTTTTTAACGGCCAAATAT CTCCTCCAGGGATTCGATCCCAGACCTGGATCCCTTCTCTCCCCAATTCATATGTCCCTCAGCTCTTAACACTTGAGTTA TAATTCAATGACTGAATACAAGACCACTACACCATACCACAATTTGTTTGAATTAAGAGTTTTTGCAGAGTTCCAATCAG GTTAAAAACATAATATTCCTCAATTTCATTGACAAAAAAAAATTCCTAAATTTTTTGATTGTTGAAGAAACTTGAACCGA TTGAGAAACTCATGGATTAACATGTTTATTATTTAGTTTCAAAAAAAAAAAACATGTTTATTATTTATTATTTACCCCTC CATTATATGTCCCCAGCTCTTAACACTTGAGTTATAATTCAAGAATGCAAGACCACTACACCAGACCACAATTTGTTTGA ATCCCCCACCCCACCCCCATACCCACTCACATCACACCAGAAAACGAGTGACAGATACACAGTCACAAGGAAACGCTATT CCTTTTCTGAAATTACGTAATCACCCTTACCGTCCTGCTCCTTCAAAACAAAAACTACACATTGTCAACCTGGTTCCGAC AAATTCACGTCGTACCATCCGAGATGTCGGTGAGTTTCATTTTCCTCTTCTCAGATCCCTTCCCCTTCCCCATTTCGTGT GTTAATTTTGTTCCTTGAAGTTTCTTATCGTTTCAGATTCTATGTGGGTTTCTTCTCTTTAAGTTTGTTTATGGCGCATT GTGTTGCGTTTTGGTTCTGCTTGGATATGAAAATCCTTGTATTTTGTCAAATGGAAAATGGGAACTCTTCTTTGATTGAT ATATTAAATTTTCATTCTTGGAAATTGTTAAGTGATATATGACCATATCCATGAATGGTTTTATAATTTAGATGATGTAG TTTATAACTATAAGTCTATAACTGCTCTTCTTGAACTTGAAGCAATAGGTACTGCTTTGGGGGTTTGGATCTACAGTGAT GGAAGTAGCAGTATTATATTTTTCCCTCCAAAAAGGAGAAAACTTTGAGAGTTGGTTCTGTACCTGTTCCTGTTATAGTG TTATGTGGTTCATTCACCTATTGTTGATATACATGATTTGAATTGATTCACTCTGACATTTGAATTGCTTCAATTCAAGT GGAACCCTATGAGGTTCAATACATGTTAAGTGATTCATTCACCTGTTGATGAATGATAATACATTTTGGAATTGATTCAT ATTGTCATTTGAATTGGTTCTTTCCAAGTGAAACCCTATCACATTGATATTGTCTCTTAGTATAACGTTCCCGCTTGGCT TATTAAATTTTTGTTCAATTGCTTTGTCTTCTGAGCTATGAGGATAGTGCTGCTACAGTGCTACTCATTAGGCTTTTGTA TCTTGCTGTCATTCTTTCATTTAGTTCTTAGTTCGACCGTTCTTTCCATTATTTCAAAGTAGAGATGGGTTTCTATTTCT ATTTGACTAGTTGATCTCATTTTGCACATGGCCTTGCTTCATGGTTCTCCCTACTTTACAGAATGCCATCCTTGATATTT ACTTTAATTTTACATTTTACGTATGTGCAGACCGTAATGGACCATACGGATCAAAGAGTTGAAGCGATTTCCCACTCTAC AGCTTCACCAAATCGGACTAATCATGTTTCAGATGTGAGGAAGAAATTTTTACATAGTAAAATTGGTTACTGTTAGCACT ATGATAGTAGAATAGATGGGTCGGGAATGAATACTAGGTTCCCAGTGTGGATTCCTATTCCCTGCTCACAGCATTATAAA TGTGCATCGTAGTAACTGCATTTCAAAACTGGTGATATATATTACAATTAAGACTTATTAACACGTCCCTGCCCACTGTG TTTTGTTGCTATTTTAGCTGTGTCAATTTTTCTTAGTAGTATCGATTTCTGATATTCCTCGATGGACAAATTTCAAAGTT CATTCCATTTTGATTTCAGATAAGTACAGTCAAGGTTAGCAACATATCACTGATGACTTCCAAGAAGGATATTGAAGAAT TCTTTTCATTTTCAGGTGATATTCAATATATTGAGATGCAAAGGTCAGGGAACTTGCAATTTATCTTTATTCATTTCTTA TGATTGTTATTGTTTTATACTAAATGTCACCTGAATATTTTGTTGTCATTCTGCAGGGAATCTGATCGCACCCAAGTTGC TTATGTTACTTTTAAGAATTCACAGGGAGCAGAGACAGCAGTTCTCTTAACAGTATGTTTATATGCAAATAACTTTTTGT ATTGAAAATCTTACTGAGAGCTTTGCACCAATGTATCTTATCTATTATTTCCATTCAACTATTCAAGCACTAAAACTGAT AAAAGTAAGATAGAAAGAAACAGAAACTTAGTTTTTTATATATATATTGAAAAGTCATGTACTTATTCTTGAATTTTAAT ATAGGGTTCCAAGATAGCTGACCTATATGTCACAATCACACCTGTGGAGAAGTACCAGCTTCCCCCTGATGCTCTTCCCT CAAGTCCAGTAAGTACTCAATTGTTTGTTCATTCTGATATTCATTGTGCTGCAGTTAATCATGCGAAATATAAACTCTTT TGCTTATCATGCCTGAACTATGTGCCCAAAATATAAGTGTCAAAGTATACATAGAATGTGTATTTTTAATACATTTGACA TTAAATTATTATTGTTGACCGACTTGTAGGATATGAAACATATGGCTTCACTGTAGCAGCCAAATTGTATGGTGCTTAAT ATCTTTGTTTGGGTATGATATCAATACATTATTTTAGATTTGGGGTGCGTTTGAGTAAACAGGTTAATTCAGCGCTTATC GCATATGTGCTTATCATAAGCTAATTTCCAAAGCTTATTGAAATATACTCAAAATAAGCTTTAAGTATGTGTAAACGCTT ATCTATAAGATAATCTAAGCAGCTTATGAAAATAAGCGCAACAACTTATAGGTCATAAGTTATTTACATAAGCTCTCTCT AACACGTAAGATAAGCTCAAATGATGGTAGGTAACCACCCCTTTACTACTTGAGTTAGTTAGTCCGTTAGGGAAGTCATG TGGGTAGTTAGTGAATTGGTTAGAGATTAGAGAGAGTGAAGAGAGACTATAAATAAGAGGGTGAGGAGAATAGTGAGGGT ATTTTGTTTGTAATTGGGAATTTAGGGAGAGTCCTGGTCTCTCGAATACCAGGGATTTGTGTATTTTTCATGTCATTCTT TCAATAGTATTCAGTATCTCTCTTTGTTCATAGCTCATAGCTGGTACCTATCAAATAAGCTCTTCCAAACAGGGCCTTTC CTTGTTTTGCTGTTGATATTGGCAACTTTTCTGCAGCAGTGAACTGAAAACAGCTCTGGCCTGAAGATGATGGTGCAATA TCTTATATACACCAAATTACTACTTTTGTCCAACCTGATCGAAATTTGCCCTGTTATAACATTTTCTTGTGAAATTAGAT TCATAACTAAATGCCTGCATTGTGGGTATTGTATCTGGTGCTCAAATAAATATACTGTAAACTTTGTACAATCTCTGCAT GTATATACTAATTCTTCAGTCCCCAAAGTATACAACAAATGTGTTACAAATAAATTCTCAACCATAAACAACAGGAAATT CGAATTTCTGTGCTATTTATTTCTTAATACCTTTAATGATTCTGATGTTCAATGCTCTTCTTAATAGACAAACCAAAGTG CTGCTGCCGTTAAGAAGGCTGAAGACGTAATAAGCACCATGCTAGCCAGGGGTTTCATTTTGGGAAAGGATGCAATCAAC AAGACAAAATCCTTTGATGAACGCCATCATTGGACCTCAAATGCTTCTTCCACAGTTGCTTCCATTGACCGTAAAATGGG TATAAGTGATAAACTAAGTATTGGAACAGCCATTGTCAATGATAAGGTGAGAGAGGTGGATGGAAGATTTCAGATTTCTG ATATGACAAAGTCCGCAATTGCTGTCGCTGAGCAAAAGGCGAGTAGTGCTGGTTCTGCTATCATGAGCAATCCTTACGTA TCCACTGGAGCTTCATGGCTGTCAAGTGCCTTCACTGCTATTGCAAAGGCGGCAGAGGATGTCAGCACGATGACAAAGGA GAAGCTTGAACAAGCCGAGGTGGAAAAGAAGGATACCATTTACAATGAAAGGAAAGGGAGTGTTGATGAATATGCACAGA TGCACTTAGATGAGTCTTCAGATTGGGGTCCTGCAGTTGTTCCTGTTAATTCGGACAACGACAGTAAGCTGTGAATTCTA TAACTTGAACTCACGTGTGCTCACAAGCACAACGGGATTGACTTAGTTGCATAGTATTTCTCAATCTTCAGTTGCTGCAA GTTCGCTGTATTATGAAATGTCTTATTGATTGTTTATGGTGATTGTAAAGGTGTATCTTACAGATGTTCTTCCTATATGC AATCAACATTCATGTAAAATAATTCATTCTTATTTGTTTTTACCATACTTTTGAGTTTTTCCTTCACCTCTCCCTTTAGT TCACATGTTTATGGAGGAGTTTTAAGTGTAATAGCATCAACAATATGATTCAATTTTACAGAACTTCATCTCATGAGGA
CDS sequence (LotjaGi2g1v0001500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCATACGGATCAAAGAGTTGAAGCGATTTCCCACTCTACAGCTTCACCAAATCGGACTAATCATGTTTCAGATAT AAGTACAGTCAAGGTTAGCAACATATCACTGATGACTTCCAAGAAGGATATTGAAGAATTCTTTTCATTTTCAGGTGATA TTCAATATATTGAGATGCAAAGGGAATCTGATCGCACCCAAGTTGCTTATGTTACTTTTAAGAATTCACAGGGAGCAGAG ACAGCAGTTCTCTTAACAGGTTCCAAGATAGCTGACCTATATGTCACAATCACACCTGTGGAGAAGTACCAGCTTCCCCC TGATGCTCTTCCCTCAAGTCCAACAAACCAAAGTGCTGCTGCCGTTAAGAAGGCTGAAGACGTAATAAGCACCATGCTAG CCAGGGGTTTCATTTTGGGAAAGGATGCAATCAACAAGACAAAATCCTTTGATGAACGCCATCATTGGACCTCAAATGCT TCTTCCACAGTTGCTTCCATTGACCGTAAAATGGGTATAAGTGATAAACTAAGTATTGGAACAGCCATTGTCAATGATAA GGTGAGAGAGGTGGATGGAAGATTTCAGATTTCTGATATGACAAAGTCCGCAATTGCTGTCGCTGAGCAAAAGGCGAGTA GTGCTGGTTCTGCTATCATGAGCAATCCTTACGTATCCACTGGAGCTTCATGGCTGTCAAGTGCCTTCACTGCTATTGCA AAGGCGGCAGAGGATGTCAGCACGATGACAAAGGAGAAGCTTGAACAAGCCGAGGTGGAAAAGAAGGATACCATTTACAA TGAAAGGAAAGGGAGTGTTGATGAATATGCACAGATGCACTTAGATGAGTCTTCAGATTGGGGTCCTGCAGTTGTTCCTG TTAATTCGGACAACGACAGTAAGCTGTGA
Protein sequence (LotjaGi2g1v0001500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHTDQRVEAISHSTASPNRTNHVSDISTVKVSNISLMTSKKDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKNSQGAE TAVLLTGSKIADLYVTITPVEKYQLPPDALPSSPTNQSAAAVKKAEDVISTMLARGFILGKDAINKTKSFDERHHWTSNA SSTVASIDRKMGISDKLSIGTAIVNDKVREVDGRFQISDMTKSAIAVAEQKASSAGSAIMSNPYVSTGASWLSSAFTAIA KAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDESSDWGPAVVPVNSDNDSKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Gene3D | 5 | 106 | 102 | 4.2E-10 | ||
| PANTHER | 12 | 300 | 289 | 8.8E-121 | – | |
| PANTHER | 12 | 300 | 289 | 8.8E-121 | – | |
| SUPERFAMILY | 18 | 104 | 87 | 3.94E-12 | ||
| ProSiteProfiles | 28 | 102 | 75 | 10.838 | ||
| SMART | 29 | 98 | 70 | 4.7E-6 | ||
| Pfam | 32 | 91 | 60 | 2.1E-6 | ||
| Coils | 240 | 260 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0001500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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