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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0001800 |
| Transcript ID | LotjaGi2g1v0001800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT2G01818.1 PLATZ transcription factor family protein; Swiss-Prot: sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1; TrEMBL-Plants: tr|A0A151S5A5|A0A151S5A5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0001800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1099523..1102094) extracted from Lotus japonicus Gifu genome v1.2.
CATGTTAATTTCCCATTTTGGTCCCACGTGACACCCAACTGAAACATTGTACTGTGTTGTCCCATAATCAGTCACAAATC TTTGAATTTCAAAATATTTGTTTCCATTTATACTTTTATCCCCTGACTTTCTCTTTTCTGTTCCGAATATTGCATTATTT GCATAGCATCTTCTTCAAATCCAAAGTTTATTTTCTCTCCCTTTCAATTTCTTGCTCAAGACAGAGAGAAAAAGTGACAT GGTTAGCATCATCATCATCATCTCCTAGTTTTGCTTTTTCTATTTGATTTCTTGTGAGTGTTTGATTGCAATTTCAAGAT TATTGATTCATTCATACTCTTTGCTGCATTCACAAATTTTCCCTGCACTATATTGGTGAATGTTATTCTTGAATAGTTAC TTAACAATTGAAAATAGGCCATTTTGATTCCTGCAGTAACCTCTCTATTACCATACTTCAATTCAAATTTTAGTTACAGG AGAATGTAAAAGGTTTCATATTCAATTTGCTGGTTTGGTTAATCTTTCACTATATCTTGAACATTGCAATTTGAGTTGCA AATTAGGTTGTAGGGTTAATTGTAAGTATTTGTTTGAAGATTGATATGCTAGTAATTTGATAAGTAAAGTGTGAAGACTT GATTTTATGATCATTGAACTGTGTTTGGGTTCTCAATTTCTTTTGATGCCATTAAATTGGATTTTGCAGATGGGGCCGCC GAATGGATTATCAAATGAAAGGAAACAAGATTGGCTTGGTGTTCTTATTAATAACAGCTTTGGCAATTGTGAAGATCATG AAGATGTTAAGTTTAATGAAAAGAATGTGTTCTGTGTGGACTGTGAAATTAGCTTATGCAGGCACTGTAAGGAAGCCCAT TCCCTCCATCGAAGGTTCCAGATATACCGATATTGCTATCAAGATGTTGTTCGCCATTCTGATCTGCTCAAGTATTTTGA CTGCTCCAACATTCAGGTTCTCTATCATTTATTATTTCTATTAATTTGATTTAGTGCGTGCTTGGAAGCCCTTCTACAAT TTATTTTAATGTCAATCAATATGTCAGTCAATCAACTGTGAGTAGCTTCTGAGTGTTTGAATTGATTATCAGGAAAGAGA AACGGATACAAATATGCTGTTATTAGTGTTTAAAACTAAGGCAGTTTCTTAATTGTAATCTAGTTCATTGCTGCAAATGA TTCATATGGTTGATTGTTGATTATTTTGCTCTGATCAGTGATAATCCTTCATGAATGAATGAAACTTCTATGTAGTTTTA ATTGCTGAATTGGAATATTGTGTAGCTCTATTAACAGTTTTGCATTGTTCATAACATGATAGATTACAATATCTAAATTT TTCTAAAAAGGTTTGGAGCGCGTTTAGATACAGGTTAAAGAGCAGTTATCCGAGCTTATCTACTAAAAAAAGCGTCAGAT AAGTTTCAATAAGTGCTCTTTGGTCTGTATCCAAACAGGTTCTTAGTCAAGATTCCATAAATCCTGTGTCTCTTGTGAGT TCTAACCATTGAGTTGAGTGAACTGTATTACTATTAATTTGCTGATGCTGTCTTCTGTGAAATGAGTTATGCTTAATTTT CAATTCTTAATGTAATTTCTGAGGAATGTTTTAGTATACTTGAAAGTCATTGCTTAACTGGTATATCTGACTCACCTAAA CTAATCAAGATTAAACCATGATATTGCTTGATCTTTCACCAAGGCTCTGATTTTAATTTTCTTTTTCAAAAACTGAACTG AATTTTCTTCTTACAATGGTGACATGATTTTGCAGACTTATATATCCAACAATGACAAGATTGTGCACCTCAAACCAAGG CCTTCAATCAAAGACATCAAACTAGGAAAAATATCAAAATCTGCTAATCAAGCCAAAGAAGCACAAACATCCACACCTCC TAAGTCTGGTGGTATTTGTAAAGAATGTGGAAAACATTTACAAGATGCGCGCAATCATTTCTGCTCCATTAAATGCAAGG TAACAACGCCATGCTTTAATTTAATGTGTTATTTAATGTTTGCTTAGCTCAACTATTTGTGATTTAAAACATGTGCATTG TTACTTTGTTAGATCTCAGTGCTTCCAGTGGAACCCCAAAAGCAAGGAATTGCAGAACATTCTATGAATAAAAAGCAGTG TTCACAGAAGATTTCAGAGGAGCCTTTGAACCAAAATGATAACCAAAATTCAGAGAATGAGTCATCTATCTCTATAGCTG AGCCATATGAATGTGTTGAAATAGTGAACTTCAGAAAGAGGCCAAGGAAAAGCACCCCTCACATATCTCCTTTGATATGA ATTTTACAACATCTTGAAATTTTTTTCCTTTTTTGATTCTTTTTGTTTTTGCATTTTTGGAGAATAAGATTTTGCCAATC TCAAAGTAGCTTGTTGAGCTTGTACAGCACAAGTTTGGATAGTTCATGAAAGGTGTACAGGGTGCACTGTGGTTACTCTT CAATTCCATATTTTTTTCCCAGTTCTTATATTGGAGTGAAAATTGGTATCTCTAATGGTTAAAACTCAAAATGTTGCCTT CTAACAAAAATT
CDS sequence (LotjaGi2g1v0001800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGCCGCCGAATGGATTATCAAATGAAAGGAAACAAGATTGGCTTGGTGTTCTTATTAATAACAGCTTTGGCAA TTGTGAAGATCATGAAGATGTTAAGTTTAATGAAAAGAATGTGTTCTGTGTGGACTGTGAAATTAGCTTATGCAGGCACT GTAAGGAAGCCCATTCCCTCCATCGAAGGTTCCAGATATACCGATATTGCTATCAAGATGTTGTTCGCCATTCTGATCTG CTCAAGTATTTTGACTGCTCCAACATTCAGACTTATATATCCAACAATGACAAGATTGTGCACCTCAAACCAAGGCCTTC AATCAAAGACATCAAACTAGGAAAAATATCAAAATCTGCTAATCAAGCCAAAGAAGCACAAACATCCACACCTCCTAAGT CTGGTGGTATTTGTAAAGAATGTGGAAAACATTTACAAGATGCGCGCAATCATTTCTGCTCCATTAAATGCAAGATCTCA GTGCTTCCAGTGGAACCCCAAAAGCAAGGAATTGCAGAACATTCTATGAATAAAAAGCAGTGTTCACAGAAGATTTCAGA GGAGCCTTTGAACCAAAATGATAACCAAAATTCAGAGAATGAGTCATCTATCTCTATAGCTGAGCCATATGAATGTGTTG AAATAGTGAACTTCAGAAAGAGGCCAAGGAAAAGCACCCCTCACATATCTCCTTTGATATGA
Protein sequence (LotjaGi2g1v0001800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGPPNGLSNERKQDWLGVLINNSFGNCEDHEDVKFNEKNVFCVDCEISLCRHCKEAHSLHRRFQIYRYCYQDVVRHSDL LKYFDCSNIQTYISNNDKIVHLKPRPSIKDIKLGKISKSANQAKEAQTSTPPKSGGICKECGKHLQDARNHFCSIKCKIS VLPVEPQKQGIAEHSMNKKQCSQKISEEPLNQNDNQNSENESSISIAEPYECVEIVNFRKRPRKSTPHISPLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 232 | 223 | 5.7E-63 | – | |
| PANTHER | 10 | 232 | 223 | 5.7E-63 | – | |
| ProSiteProfiles | 28 | 66 | 39 | 9.641 | ||
| Pfam | 68 | 159 | 92 | 1.3E-24 | ||
| MobiDBLite | 172 | 205 | 34 | - | – | |
| MobiDBLite | 173 | 205 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0001800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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