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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0006900 |
| Transcript ID | LotjaGi2g1v0006900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9FME0|RFA1D_ARATH Replication protein A 70 kDa DNA-binding subunit D; TrEMBL-Plants: tr|I3SCE2|I3SCE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0006900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2302367..2306513) extracted from Lotus japonicus Gifu genome v1.2.
TGGTTTGTAGGATCGTAGGTAAACAGTAAAATAAAAAACCCAATTGGGGTTCAATCGGTGGACTAGGTATTAGTTGAGGA TGCTGCTGTTCAAAGGATACACGTGGGGGAGATGTAAACTAGGAATAGTTATCTGGTTCCAAATCACGTGAGATGATGAT GTTCTGAAGGTGGGTGATAAACTATGTGGTGAGTGACATTTAAGCGGCGATATGTCCGGCTTTAGAGGTGGAAGGATCAA TTTGGCCAGGTTTTGCAAGGAGGTGCTGTCACTTTTGTGTTTCTTAAGCTGTGATTTGCATAGGGGCAGCCGATTAACCT GCAGTTGCGCACCGTCTGCAACATGTGTCATTTCATAGGTACTTTGGTGAATGATACTATTTGTTTGTGGGGATTCATGA GGAAAGGGTATTCTTGTTTTGTTATCTCCCGAACTTGGATTCGATGTTTTTCATTTTACTTTTTGGTGCTTTTCATAAAC CTACTGAACACATGTGAACTTATTTATAACTTTGTACTTGTAGTAAAGGTTTAGACTTCTAAGTCGGTTAGTTAAGTTTA AACATCTTAGTTACCTTGACTATGTGTATTTGTTGTTTGTTACTTAAAACTCAAATTGGACCTGATTCACTGTGAAGCAT GTCATCTGTTTGACAAAATGTGTTAACAACCAATAAAAGTCAAGAGTGAGGTTTTTAAATTTTGTAAGCACTTTGTGATT TCAAAAAATTTGGCATCCCGCCTAAATGAGGCTTATTTAAGACATTGGTACGCGGAGTTCCATAGTGAAACTTTTCATTA GGAAAACTTGTATTTTCTGGATATCTGTTAGAGTGTTATTTTCTGTGTCATGGATAGTTCTGTTTCAATGGGTGTAGTGA ATGGATTGTGCCCTCCATCTCAAATATGGAGAGTAATAGTTAGGGTGATTCGTTGCTGGACTGTTTATTCTAGAAATGGA AGTGGATTACCACAATCATTGGAGATGGTTTTCATGGATCATTATGTATGTGTAGTTGTTATTGAACCTGAACTTAAAGT GAAAATTTAAGTAGTTACGTATGAAGTTTGTGTGCTTTGTTAATTTTTATTGAAATCTTGATTGGTTTCTATATTTTGGT GTTATTTTTCATTGTTGCAAACTTAATGTAAGTTTTTAACAGAAGCTGTAAGTCAACTTCTTAATTTTTTATATTGAAGT ACATGAATATATGTTTCAAAAGTGTGTGTTTAATTTGTTGAATTCGTTTGTTCTTCTTTCATTTTGGAATGTGTTTAGAA GTGGCAAGGCTAGGAAAATATGCTGTATATTAGAGGTTTCGAAGTTCATTTCTCTTTTGTTTTGTGTAATGTTGACTTTG TAGTGAATAAAATCATTTGATACACGACTGATCCAAACTTCTGTGCTAATGAACTTTTTGTTAATGTTGTATGTTTTCTC CACTTTAGTAATAGTTAATGGTGTGAAGTTGTGAATGATATTTTATTTTTCATGAGAGTTTTGTTTTTGGTTTATTTCTT TATATTGGACTTGATTTAATAATTATGTAGTTGTACTGGTTAAATGTATTATATAGGATGTGTTAACCAAATTTTTTTTG TTGTTAATTATATAAAGGGTGGGAAGATCCAATGCTCTTTAAGGAAAGATATGTTTTTGAAATGGGGGGATAAATTTATT GAGGGGAATGTTTACAAGATAACCTTTGGAAGACTAATTCCAAATATGGGAGGTTACCGTGCAACTGAACACCCATACAA GATTTTTTTCATTGACAATACTACTGTGGTTCAATGTGAGAACACCGAAATTCCAATGTGGGGATTGTCACTGAAGAATT CTGATCAAGTTAGAGCTGTTTCTGGGCAAGCTGATCATTTAGTTGGTATTTATTTCAATATTTATCCAAGTATTCTTTTT GTTTGCAGTTATTTGTCTACTTTGTAATGGACTCAATTAGAAAATTAAAAACATGCTATTTTGTCTGGTTACCAAATTTT TTTGAGATTAGATTGGTTTGATTGATTGGTTTTATTATAGTTTGTGCTGTGCCTTGCAAATTTCATAGGATTGTTGACAT CAGTTATTGAAGAAAGGACATGTGTGAAGAAGTCAACAACCTCTAAGATGATGATAATTGAGCTTGCTGATGACAAGTAT AGTGATTTTTTTTTTTGTTTTGGTTGTTTAATTAGGTGTGGATTTCATTTTAATGTTTTGTGAGGTATCTTTATTTGTTA ATAGATGTACTTTTTTATCAGGGGTAAGATTGAATGTGTATTGTTTGATGAGCATGCAAGATTTGTAACTGAGTATCTGT CTATGCATTCAACTGAAGAAGCAATATTGGTATTCCAGTTTGCCAAAATTAAAACATTTAGAGGTATGACTGAGTATCTG TGTATGCATTTGTGGATTATTTGTTTGAGATAAATATTAGTTTTTGAACATATATTTTGGGTGTATAGGTAAAACTGTTC TTCAAGGTGTGACTGGTGCATCGAGGCTCAGTTTTAATCCCCAAATACCAGAGGTTTTGGAATTTTGGAATGGGTAATGC AATGTGAAAATTTTATTTGTCATGAATATGAATGAAGTTAAACTATCCTGTTTGTAATAATTAGTACACTTCATTGTTAG TAGGATTGCTTTGCATGGCTGTGATGGTAATCAGCAACTCGGAGTTGATGTTATTGACATAGGGGTGGTTTCATTATTTG ATGATTTTATAAAGAATCACCCACAGAAGTCTGTTCGATCTTTGAATGAGACTATGGAGGTATATATTTAGTGTGAATCA AGTGAAATCTTAATGATTGGATGGTGAATTTAATTGCATATTTTTTGTGTGTCTTTGGCAGGATGGGGAGTTTATTGTTA GGGCTAAAATAATGTCTCTCCTACAAGATGACAATTGGTGGTACCTAGCATGCAAGTGCCATCGTGCTGTAATTGTTGAA GATGGTCATCATTACTGCAGTGGATGTTTTAGGCGCGTGAATTATGTTGCTCCAAGGTATTTTTGGTAATTATGAAAAGT TGTAGTTCTAAGTGTTGAATATCTGAAAAAAAAATACTGAAGTTATTGTTATAGTATTTGAATTGTTGTTGAATATTTAA TAGGTTTAGAATAAAGATACAAGTTTCTGATGGGGATGATTTAGCTGAATTTGTGATGCCTGACTTAATAGCTGAAAATC TGATCAACAAGTCTTGTATGGATATACTTAATGAAGTCAAGGTAAATTAGTTTTGTGTAGATTTTTATCCTTAGGGATGA TATAAGATACTGATGAATTTTGTTTTGGTATGGTGCCATGTGTAGGACCCAAATGCCTTTGAAGTTGCACCTACTATTGA AGACACATTGGTGGGAAGAGATTTGTTGTTTAAGGTTGAGAAGAAAGTGGTAAATTTATATAACTATGAGGAGCCATATC ATGTGAAACGTGTTTGTGATGATTCAGATATTATAAAGGCTTACATGTCCAATTCATCTGCTGAGACTCCTATTTTGGTT TGTTAATTTTAACTTTTTTTTTTTGCTTAACTGTGTTTGTTGTTTGAAAGATTTATTTAGTGGTTTCACTACTGATTTTA GTTTGTATTTGAAATGCAGGCAAAGTTTACTGGTGCATTTTCTGTTTTGAATGTGGATGACTATGACATTGATATGGATA TTGATTTACTGACAACCTGTATTGAGCTTGGGGTTCCTGATTGTGTTAAGCCTGGATATGAAAGGAGTAAAACTGAACAT GGGAGTTGTTCTAAATCCTACAAGAGAAAGCTGGAGGAAGAATTTGATGAGGAGTTTGATTCATATGATTTTAAGTTGAA GGATCGAAAGTTTGAGTCAGATTAGTTGATAGGGATTGCTGTGGTTACTTAGGCAACAAATGGGATGTTCATATTTTGTT AGTATGGGTATGTCTTTTTGTAAACCATACATTAGTGTAAAGATCCCTTGGAGGTTATTCTAGGTGGGGTTTCTATAGTA AGATAGAAGCAGTGATTTTTTTGGTGGATATTTTGGCTGTGTAGTCATTAGCTAATGACAGGATTAAATAGAATCCTTGG TTAATTTATGTAAGTGTTCCAGTCTTTAGTTTGATCAATGGAAGTTCCAAATTTATTTATTGGCTTA
CDS sequence (LotjaGi2g1v0006900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCATTTCATAGGATTGTTGACATCAGTTATTGAAGAAAGGACATGTGTGAAGAAGTCAACAACCTCTAAGATGAT GATAATTGAGCTTGCTGATGACAAGGGTAAGATTGAATGTGTATTGTTTGATGAGCATGCAAGATTTGTAACTGAGTATC TGTCTATGCATTCAACTGAAGAAGCAATATTGGTATTCCAGTTTGCCAAAATTAAAACATTTAGAGGTAAAACTGTTCTT CAAGGTGTGACTGGTGCATCGAGGCTCAGTTTTAATCCCCAAATACCAGAGGTTTTGGAATTTTGGAATGGTAGGATTGC TTTGCATGGCTGTGATGGTAATCAGCAACTCGGAGTTGATGTTATTGACATAGGGGTGGTTTCATTATTTGATGATTTTA TAAAGAATCACCCACAGAAGTCTGTTCGATCTTTGAATGAGACTATGGAGGATGGGGAGTTTATTGTTAGGGCTAAAATA ATGTCTCTCCTACAAGATGACAATTGGTGGTACCTAGCATGCAAGTGCCATCGTGCTGTAATTGTTGAAGATGGTCATCA TTACTGCAGTGGATGTTTTAGGCGCGTGAATTATGTTGCTCCAAGGTTTAGAATAAAGATACAAGTTTCTGATGGGGATG ATTTAGCTGAATTTGTGATGCCTGACTTAATAGCTGAAAATCTGATCAACAAGTCTTGTATGGATATACTTAATGAAGTC AAGGACCCAAATGCCTTTGAAGTTGCACCTACTATTGAAGACACATTGGTGGGAAGAGATTTGTTGTTTAAGGTTGAGAA GAAAGTGGTAAATTTATATAACTATGAGGAGCCATATCATGTGAAACGTGTTTGTGATGATTCAGATATTATAAAGGCTT ACATGTCCAATTCATCTGCTGAGACTCCTATTTTGGCAAAGTTTACTGGTGCATTTTCTGTTTTGAATGTGGATGACTAT GACATTGATATGGATATTGATTTACTGACAACCTGTATTGAGCTTGGGGTTCCTGATTGTGTTAAGCCTGGATATGAAAG GAGTAAAACTGAACATGGGAGTTGTTCTAAATCCTACAAGAGAAAGCTGGAGGAAGAATTTGATGAGGAGTTTGATTCAT ATGATTTTAAGTTGAAGGATCGAAAGTTTGAGTCAGATTAG
Protein sequence (LotjaGi2g1v0006900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCHFIGLLTSVIEERTCVKKSTTSKMMIIELADDKGKIECVLFDEHARFVTEYLSMHSTEEAILVFQFAKIKTFRGKTVL QGVTGASRLSFNPQIPEVLEFWNGRIALHGCDGNQQLGVDVIDIGVVSLFDDFIKNHPQKSVRSLNETMEDGEFIVRAKI MSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMPDLIAENLINKSCMDILNEV KDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLNVDDY DIDMDIDLLTTCIELGVPDCVKPGYERSKTEHGSCSKSYKRKLEEEFDEEFDSYDFKLKDRKFESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 105 | 105 | 3.8E-14 | – | |
| SUPERFAMILY | 2 | 103 | 102 | 1.85E-10 | ||
| PANTHER | 3 | 300 | 298 | 1.7E-48 | – | |
| PANTHER | 3 | 300 | 298 | 1.7E-48 | – | |
| CDD | 5 | 101 | 97 | 4.48751E-13 | – | |
| Gene3D | 135 | 288 | 154 | 1.4E-11 | – | |
| CDD | 140 | 276 | 137 | 1.15887E-19 | ||
| SUPERFAMILY | 150 | 277 | 128 | 4.45E-15 | ||
| Pfam | 154 | 269 | 116 | 3.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0006900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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