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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0006900 |
| Transcript ID | LotjaGi2g1v0006900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9SD82|RFA1B_ARATH Replication protein A 70 kDa DNA-binding subunit B; TrEMBL-Plants: tr|I3SCE2|I3SCE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0006900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2302377..2306600) extracted from Lotus japonicus Gifu genome v1.2.
GATCGTAGGTAAACAGTAAAATAAAAAACCCAATTGGGGTTCAATCGGTGGACTAGGTATTAGTTGAGGATGCTGCTGTT CAAAGGATACACGTGGGGGAGATGTAAACTAGGAATAGTTATCTGGTTCCAAATCACGTGAGATGATGATGTTCTGAAGG TGGGTGATAAACTATGTGGTGAGTGACATTTAAGCGGCGATATGTCCGGCTTTAGAGGTGGAAGGATCAATTTGGCCAGG TTTTGCAAGGAGGTGCTGTCACTTTTGTGTTTCTTAAGCTGTGATTTGCATAGGGGCAGCCGATTAACCTGCAGTTGCGC ACCGTCTGCAACATGTGTCATTTCATAGGTACTTTGGTGAATGATACTATTTGTTTGTGGGGATTCATGAGGAAAGGGTA TTCTTGTTTTGTTATCTCCCGAACTTGGATTCGATGTTTTTCATTTTACTTTTTGGTGCTTTTCATAAACCTACTGAACA CATGTGAACTTATTTATAACTTTGTACTTGTAGTAAAGGTTTAGACTTCTAAGTCGGTTAGTTAAGTTTAAACATCTTAG TTACCTTGACTATGTGTATTTGTTGTTTGTTACTTAAAACTCAAATTGGACCTGATTCACTGTGAAGCATGTCATCTGTT TGACAAAATGTGTTAACAACCAATAAAAGTCAAGAGTGAGGTTTTTAAATTTTGTAAGCACTTTGTGATTTCAAAAAATT TGGCATCCCGCCTAAATGAGGCTTATTTAAGACATTGGTACGCGGAGTTCCATAGTGAAACTTTTCATTAGGAAAACTTG TATTTTCTGGATATCTGTTAGAGTGTTATTTTCTGTGTCATGGATAGTTCTGTTTCAATGGGTGTAGTGAATGGATTGTG CCCTCCATCTCAAATATGGAGAGTAATAGTTAGGGTGATTCGTTGCTGGACTGTTTATTCTAGAAATGGAAGTGGATTAC CACAATCATTGGAGATGGTTTTCATGGATCATTATGTATGTGTAGTTGTTATTGAACCTGAACTTAAAGTGAAAATTTAA GTAGTTACGTATGAAGTTTGTGTGCTTTGTTAATTTTTATTGAAATCTTGATTGGTTTCTATATTTTGGTGTTATTTTTC ATTGTTGCAAACTTAATGTAAGTTTTTAACAGAAGCTGTAAGTCAACTTCTTAATTTTTTATATTGAAGTACATGAATAT ATGTTTCAAAAGTGTGTGTTTAATTTGTTGAATTCGTTTGTTCTTCTTTCATTTTGGAATGTGTTTAGAAGTGGCAAGGC TAGGAAAATATGCTGTATATTAGAGGTTTCGAAGTTCATTTCTCTTTTGTTTTGTGTAATGTTGACTTTGTAGTGAATAA AATCATTTGATACACGACTGATCCAAACTTCTGTGCTAATGAACTTTTTGTTAATGTTGTATGTTTTCTCCACTTTAGTA ATAGTTAATGGTGTGAAGTTGTGAATGATATTTTATTTTTCATGAGAGTTTTGTTTTTGGTTTATTTCTTTATATTGGAC TTGATTTAATAATTATGTAGTTGTACTGGTTAAATGTATTATATAGGATGTGTTAACCAAATTTTTTTTGTTGTTAATTA TATAAAGGGTGGGAAGATCCAATGCTCTTTAAGGAAAGATATGTTTTTGAAATGGGGGGATAAATTTATTGAGGGGAATG TTTACAAGATAACCTTTGGAAGACTAATTCCAAATATGGGAGGTTACCGTGCAACTGAACACCCATACAAGATTTTTTTC ATTGACAATACTACTGTGGTTCAATGTGAGAACACCGAAATTCCAATGTGGGGATTGTCACTGAAGAATTCTGATCAAGT TAGAGCTGTTTCTGGGCAAGCTGATCATTTAGTTGGTATTTATTTCAATATTTATCCAAGTATTCTTTTTGTTTGCAGTT ATTTGTCTACTTTGTAATGGACTCAATTAGAAAATTAAAAACATGCTATTTTGTCTGGTTACCAAATTTTTTTGAGATTA GATTGGTTTGATTGATTGGTTTTATTATAGTTTGTGCTGTGCCTTGCAAATTTCATAGGATTGTTGACATCAGTTATTGA AGAAAGGACATGTGTGAAGAAGTCAACAACCTCTAAGATGATGATAATTGAGCTTGCTGATGACAAGTATAGTGATTTTT TTTTTTGTTTTGGTTGTTTAATTAGGTGTGGATTTCATTTTAATGTTTTGTGAGGTATCTTTATTTGTTAATAGATGTAC TTTTTTATCAGGGGTAAGATTGAATGTGTATTGTTTGATGAGCATGCAAGATTTGTAACTGAGTATCTGTCTATGCATTC AACTGAAGAAGCAATATTGGTATTCCAGTTTGCCAAAATTAAAACATTTAGAGGTATGACTGAGTATCTGTGTATGCATT TGTGGATTATTTGTTTGAGATAAATATTAGTTTTTGAACATATATTTTGGGTGTATAGGTAAAACTGTTCTTCAAGGTGT GACTGGTGCATCGAGGCTCAGTTTTAATCCCCAAATACCAGAGGTTTTGGAATTTTGGAATGGGTAATGCAATGTGAAAA TTTTATTTGTCATGAATATGAATGAAGTTAAACTATCCTGTTTGTAATAATTAGTACACTTCATTGTTAGTAGGATTGCT TTGCATGGCTGTGATGGTAATCAGCAACTCGGAGTTGATGTTATTGACATAGGGGTGGTTTCATTATTTGATGATTTTAT AAAGAATCACCCACAGAAGTCTGTTCGATCTTTGAATGAGACTATGGAGGTATATATTTAGTGTGAATCAAGTGAAATCT TAATGATTGGATGGTGAATTTAATTGCATATTTTTTGTGTGTCTTTGGCAGGATGGGGAGTTTATTGTTAGGGCTAAAAT AATGTCTCTCCTACAAGATGACAATTGGTGGTACCTAGCATGCAAGTGCCATCGTGCTGTAATTGTTGAAGATGGTCATC ATTACTGCAGTGGATGTTTTAGGCGCGTGAATTATGTTGCTCCAAGGTATTTTTGGTAATTATGAAAAGTTGTAGTTCTA AGTGTTGAATATCTGAAAAAAAAATACTGAAGTTATTGTTATAGTATTTGAATTGTTGTTGAATATTTAATAGGTTTAGA ATAAAGATACAAGTTTCTGATGGGGATGATTTAGCTGAATTTGTGATGCCTGACTTAATAGCTGAAAATCTGATCAACAA GTCTTGTATGGATATACTTAATGAAGTCAAGGTAAATTAGTTTTGTGTAGATTTTTATCCTTAGGGATGATATAAGATAC TGATGAATTTTGTTTTGGTATGGTGCCATGTGTAGGACCCAAATGCCTTTGAAGTTGCACCTACTATTGAAGACACATTG GTGGGAAGAGATTTGTTGTTTAAGGTTGAGAAGAAAGTGGTAAATTTATATAACTATGAGGAGCCATATCATGTGAAACG TGTTTGTGATGATTCAGATATTATAAAGGCTTACATGTCCAATTCATCTGCTGAGACTCCTATTTTGGTTTGTTAATTTT AACTTTTTTTTTTTGCTTAACTGTGTTTGTTGTTTGAAAGATTTATTTAGTGGTTTCACTACTGATTTTAGTTTGTATTT GAAATGCAGGCAAAGTTTACTGGTGCATTTTCTGTTTTGAATGTGGATGACTATGACATTGATATGGATATTGATTTACT GACAACCTGTATTGAGCTTGGGGTTCCTGATTGTGTTAAGCCTGGATATGAAAGGAGTAAAACTGAACATGGGAGTTGTT CTAAATCCTACAAGAGAAAGCTGGAGGAAGAATTTGATGAGGAGTTTGATTCATATGATTTTAAGTTGAAGGATCGAAAG TTTGAGTCAGATTAGTTGATAGGGATTGCTGTGGTTACTTAGGCAACAAATGGGATGTTCATATTTTGTTAGTATGGGTA TGTCTTTTTGTAAACCATACATTAGTGTAAAGATCCCTTGGAGGTTATTCTAGGTGGGGTTTCTATAGTAAGATAGAAGC AGTGATTTTTTTGGTGGATATTTTGGCTGTGTAGTCATTAGCTAATGACAGGATTAAATAGAATCCTTGGTTAATTTATG TAAGTGTTCCAGTCTTTAGTTTGATCAATGGAAGTTCCAAATTTATTTATTGGCTTACATATGTTTAGATTGTTATCATA TTTCTGTTGAATTTCGTCGACCAAATTTAAACCTCTATATGAAGGGAAAAGCTTTTTGAGTCAG
CDS sequence (LotjaGi2g1v0006900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATAATTGAGCTTGCTGATGACAAGGGTAAGATTGAATGTGTATTGTTTGATGAGCATGCAAGATTTGTAACTGA GTATCTGTCTATGCATTCAACTGAAGAAGCAATATTGGTATTCCAGTTTGCCAAAATTAAAACATTTAGAGGTAAAACTG TTCTTCAAGGTGTGACTGGTGCATCGAGGCTCAGTTTTAATCCCCAAATACCAGAGGTTTTGGAATTTTGGAATGGGATT GCTTTGCATGGCTGTGATGGTAATCAGCAACTCGGAGTTGATGTTATTGACATAGGGGTGGTTTCATTATTTGATGATTT TATAAAGAATCACCCACAGAAGTCTGTTCGATCTTTGAATGAGACTATGGAGGATGGGGAGTTTATTGTTAGGGCTAAAA TAATGTCTCTCCTACAAGATGACAATTGGTGGTACCTAGCATGCAAGTGCCATCGTGCTGTAATTGTTGAAGATGGTCAT CATTACTGCAGTGGATGTTTTAGGCGCGTGAATTATGTTGCTCCAAGGTTTAGAATAAAGATACAAGTTTCTGATGGGGA TGATTTAGCTGAATTTGTGATGCCTGACTTAATAGCTGAAAATCTGATCAACAAGTCTTGTATGGATATACTTAATGAAG TCAAGGACCCAAATGCCTTTGAAGTTGCACCTACTATTGAAGACACATTGGTGGGAAGAGATTTGTTGTTTAAGGTTGAG AAGAAAGTGGTAAATTTATATAACTATGAGGAGCCATATCATGTGAAACGTGTTTGTGATGATTCAGATATTATAAAGGC TTACATGTCCAATTCATCTGCTGAGACTCCTATTTTGGCAAAGTTTACTGGTGCATTTTCTGTTTTGAATGTGGATGACT ATGACATTGATATGGATATTGATTTACTGACAACCTGTATTGAGCTTGGGGTTCCTGATTGTGTTAAGCCTGGATATGAA AGGAGTAAAACTGAACATGGGAGTTGTTCTAAATCCTACAAGAGAAAGCTGGAGGAAGAATTTGATGAGGAGTTTGATTC ATATGATTTTAAGTTGAAGGATCGAAAGTTTGAGTCAGATTAG
Protein sequence (LotjaGi2g1v0006900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIIELADDKGKIECVLFDEHARFVTEYLSMHSTEEAILVFQFAKIKTFRGKTVLQGVTGASRLSFNPQIPEVLEFWNGI ALHGCDGNQQLGVDVIDIGVVSLFDDFIKNHPQKSVRSLNETMEDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGH HYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVE KKVVNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLNVDDYDIDMDIDLLTTCIELGVPDCVKPGYE RSKTEHGSCSKSYKRKLEEEFDEEFDSYDFKLKDRKFESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 84 | 84 | 1.9E-10 | – | |
| PANTHER | 1 | 275 | 275 | 5.1E-45 | – | |
| PANTHER | 1 | 275 | 275 | 5.1E-45 | – | |
| SUPERFAMILY | 4 | 83 | 80 | 7.28E-8 | ||
| CDD | 12 | 76 | 65 | 1.00212E-10 | – | |
| Gene3D | 109 | 262 | 154 | 1.2E-11 | – | |
| CDD | 114 | 250 | 137 | 5.52367E-20 | ||
| SUPERFAMILY | 124 | 251 | 128 | 4.63E-15 | ||
| Pfam | 128 | 243 | 116 | 3.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0006900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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