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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0022800 |
| Transcript ID | LotjaGi2g1v0022800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT5G23260.2 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24; TrEMBL-Plants: tr|K7N0I9|K7N0I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0022800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8030411..8034737) extracted from Lotus japonicus Gifu genome v1.2.
TATTAATATAGCTAGTGTTTGTCACAGAGTTTCTCATTCACTTCTCACTTTCAAGGAAAAGAGACCATATCCGAGGTAGT GTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATCAACACATTAATGGCGTCTCCTTTTGAATTCTTACATTACAA GCCAAACCCTAATCAAGAAACTTTCCCTGTGTTTTCAATTATTTCTCTTGTTTTCTAGCCACAAATTTTATTCTCCAAAA CCATTTGATCGGCAGTAGTTTAACTCCTTGTTGTTGTTGAATTTTTCACCTTTTTTTGCTAGTTGGAATTTGAAAACCTT AACCACTCAGAAGATACAAGAAAAACGTGTGTTTGGGGGTATACATTTAGATATTTATGTAAATTAATGTGTAAATTTTT CTCTTAAATTACATTCTCCAAAACCATTTAATCTCTTCAGCATAACTCGATCCATCTGGTTGTTACTAATATATCCATCT AATTTTTCACCTTTTTTTCTGTATGCTAGTAGGAATTAGGAATTTTTCATGACCTTAACCACTCAAATGTTTGACGTTTT CTCTTTGGTTTTTTAATTTTTCTTTGTTTTCTTCTGTGGAGAAGCAAGGAAGATCAAAGTTAGGGTTTTTTCATCCTGTG GATGAGATGGGGCGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCAATCGGCAGGTCACGTTCTCGAAGAGACG CGGTGGGCTGTTGAAGAAGACTCATGAGCTCTCTGTGCTGTGTGATGCTCAGATCGGACTCATCATCTTCTCCAGTAATG GGAAACTCTTCCAGTACTGCACTCATCCCCTTAGGTACTCATGACTATCACTAATTTCTTTTCATTTTTCTTAGATCTTG CAGTTTGGTTTTATAATTTGATGATATAGCTAGCTAGCTAGCTTTCATTAATTTCTCCGAACCTTTCTTCATGTTTTTTT TTTTTTGTTTTTAGAATTTAATTTGATTGATAATTTTTGTCCTTAAATTTGCCAATAGAAGTAACATGTTACAGAGTACT ACATCATGCATGTTCACTTAATTTCTTTTCATTTTTTCTATATCTTGGTTGTGAAGATTTAAATTTGGTTTTCAATTTGA TGTTATAGCTAGCTAGCTTTCAATATTAAATTCTCCGAAACAGCTTGTTTGATTTTATTTTTTTATTTTTTAGAATTTAA GTTGATTGATTTTTCTCCTTAAATTTGCTAATAGAAGTAACACTGGACATGTTACATAGTACTACAGCAAGTTTCTATGT CTCTCTCTTTCTGTGTATGATAGAGAGAAGGAGGTTTGATGTCCATGTCATTGATTCTGAAACTAAGCTAAGGTTGACCA TGCACTTGAGTGTTTTGGACTTGGACAGTTGACGTAAGAGATTTCAGATGATCTGTTATAATTTCTTTCTTTTTTCTCAG ACTACATGTGCTGGCTGGGGATATCATACATTTCATTTTCAACAACTCCCTGTTTGTCATAGTCATGTTTAATTTCACTT TTCATGTCTGAACCATCACTCAGTGAATACTTAGTTTCCTAAGAGATTTAATGCCTCAATTCTGTGTAGTAATTAATTAT GACTTCAAATACTTTTTTTTGAAAAGGACTTTAAATACTTAAAACTTTCCCAAAAAAAAATTATATAATATAACCTTCTA AAGTAGAAGCACATTTAACATGTTCAAGGCCCCATAAAAAAAAATGTTCCAGGCCAAATTGAGAGATACTGGATAAAACT TTTTTTTATGCATCGAAAACCTAAAAGAGAAGCTATTAAAGAATGAGGAAATTGATCTCTTATGAAGGTGTGTTTTTTTT CTGGACGAAACTTATTGTAATTAAGAAGACAAAAGTCTTGAAGTTGTTATTAACTTAGGTAAATTTTTGAAGTACCCTTG TACAATTCATTTCAATATATTCCATTCCTTATAAAAAAAAGAAAACTTGGGTAAATTTCATTGAGTGGTTTTATTTAATT TCTTTCTTTTCTGATGGTGCAAAAAAATAATTTAAATTGCTATATATATAAGTTTTTTCATGTCATGGATTTTAATTATA TTTATGTGTCATGGATAATTAAATTGAAAACTTTTAATTTTCAGCATGGAGCAGATCATAGAAAAGTACGAGAGAAGCAA AGGAATATACGTCAATGGACGTGACCAACAGCGGGTATATACATTGAAGCTCGATCATCAGCTAATTTTTCATTTAAAAA ATGAATTATATTGCGTGAATACACAATTATAGTAATTAATTAATTAGGACCTCATCAATGTTCCTTGGTGAAATATTTAA TTTGCAGGAACAATTGTTCCATGAGATGTCAGTGCTGAGGCACGAAACTAGTCGCCTTGAATTTGGAATTCAGCGTTATC TTGGAGAGGACATGCGTGGTCTAAAGTATGAGGAATTGGTTCAACTTGAACATGATTTGGAAAACTCTATTGCAAAGGTT CGAAATCGTCAGGTACTTATATGTTTTATCTTCATCTTCTTTTACTTGATGTTTGAGACATTTTCAAAGATTAAAAATGG CAAAAAATAAAGCATCTTAGATTATCACCGCTTAGTTCTTAATTCGTCTCTGACCATCAAAATCGTAAAACTATGTATGG GCCGGGCTTATGCCTATCAAGTGCCGAAAGGTCAAGAAAGTTTGTGGCATAATGTTAGGGGAGCTGGAAATCGAAGTATA AAAACTTTTATTTCACAAAATATGATTTCCCATTGAAATAAAAAATTAAGCCATATTAATGTTAACATATCTCACAGGTC TTTAAACGAGAGAGATTTTTATTCTAACCCAAATTTTAAGGGCAGATCATGCGCTACAAAATAACTACTTTCATATGTGA AAGTTGAAAATAATTTAACTAAATGTTGTGGGGTTATCTGCAATTTCCCCCAATGTTTTGATGGTCATAATTAATTCATG CATTACAAATTGTGATTTGACATGAGTTCTCCATGCAGAATGAGCTGTTGCAACAACAAACAGACAATCTGAGAAGGAAG GTAACCTATATATATATAATGATTAACTCTCTGTTTCACATGCAATTCCTCACCTTACACATTGAATAGACATGATCCAT ATATAATTGTTCTGTCTTGTTGATGTAATATAGGAGAGAATCTTGGAAGATCAAAACAGCACTTTGACCAATTTGGTAAG AATATGCATGTGTGCAGATCAATCACTAGCTAGTTTAATACATTATGCTTTGTTTGTGTTTGTTGTTCACACTGAATATA ATATATAATAAGATTCAGGAGCACCGGGCGATGTGGGAGTTTCAGAAGGCTGCTGCAGTGGAAGCACATAAACCTGTTGG AGTAGTGATGGATCAGTTCTCATTCTTTGAACAGCAACCTTCTGCAAGTAGCATCCTGCAACTTTCTGCTTCAGCCCCTC TTCCACCGTTTCACCCTTACCTTCAGCTTGCGCTCCCAAACATTCAAGACCCATAAAAATGTATGGTATTCATATATTAA TCAATATTACTTTCTTACTATTTTAATATAAATTCAAGAAAATTTCATGGATTTCAATATTACTTTTATTAACTAGGCCA ATCCAATTCTGATCAGACATGTACGTGTATGAAATATAATAGTCCCCCATTAGCTTTTTTGGCCCAATCATCACACTCAC ATTACATTAAGCACATCACACTCTCTGCAGACTCTGACCCAAATTCCAAGTCCAATATCACACTTTCATACTTTGCTCTT ATAGTAGTTATTTTATTTATTTATTTGGGCCAATCATCACTAGTCTTTCTTTGGATCATCAAGCTAATTGCCTACATTAT ATGGGGCTCTAATATCATGATCATGTCACATAGTATTTCTGACCATGTCCTATTTTTCATGCTCAATAGTAACATACCAT TTGGTAATTTTTGTCTTTTCCATGGAACAAATTAAAAGAGCAATATTGCTGACTACATGTAACAACTTGTTTGTGAATTA TAAATCCTATTATTAATGAAATGACTTTGGGATTGTGGCTGCAGAGCAATGGATGGAGCTACTTGTCCTCTGTGAATGAG TCATGCTGCTGTCATATATATGGGGTATTTTGCAGTCTAGTATATAATTAGTTAAATTTAGTTGTGTGGGCCGACCAAGT GCTATGTTTGTGGTTGTTTATATATGATTCAGAGAGAGTAAAGTATTAGACATATATGGCAGATACCTATATATTCACTG GTAATCTTGGTGACTTACATATATCTTGGTGGCTTACATTATATTGCAGTTCTTTCCGAGTTGTATTTTATATAGATACT GATGAAA
CDS sequence (LotjaGi2g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCAATCGGCAGGTCACGTTCTCGAAGAGACGCGGTGG GCTGTTGAAGAAGACTCATGAGCTCTCTGTGCTGTGTGATGCTCAGATCGGACTCATCATCTTCTCCAGTAATGGGAAAC TCTTCCAGTACTGCACTCATCCCCTTAGCATGGAGCAGATCATAGAAAAGTACGAGAGAAGCAAAGGAATATACGTCAAT GGACGTGACCAACAGCGGGAACAATTGTTCCATGAGATGTCAGTGCTGAGGCACGAAACTAGTCGCCTTGAATTTGGAAT TCAGCGTTATCTTGGAGAGGACATGCGTGGTCTAAAGTATGAGGAATTGGTTCAACTTGAACATGATTTGGAAAACTCTA TTGCAAAGGTTCGAAATCGTCAGAATGAGCTGTTGCAACAACAAACAGACAATCTGAGAAGGAAGGAGAGAATCTTGGAA GATCAAAACAGCACTTTGACCAATTTGGAGCACCGGGCGATGTGGGAGTTTCAGAAGGCTGCTGCAGTGGAAGCACATAA ACCTGTTGGAGTAGTGATGGATCAGTTCTCATTCTTTGAACAGCAACCTTCTGCAAGTAGCATCCTGCAACTTTCTGCTT CAGCCCCTCTTCCACCGTTTCACCCTTACCTTCAGCTTGCGCTCCCAAACATTCAAGACCCATAA
Protein sequence (LotjaGi2g1v0022800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKTHELSVLCDAQIGLIIFSSNGKLFQYCTHPLSMEQIIEKYERSKGIYVN GRDQQREQLFHEMSVLRHETSRLEFGIQRYLGEDMRGLKYEELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILE DQNSTLTNLEHRAMWEFQKAAAVEAHKPVGVVMDQFSFFEQQPSASSILQLSASAPLPPFHPYLQLALPNIQDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 31.483 | ||
| SMART | 1 | 60 | 60 | 1.6E-40 | ||
| SUPERFAMILY | 2 | 79 | 78 | 2.62E-31 | ||
| PANTHER | 2 | 193 | 192 | 8.7E-95 | – | |
| CDD | 2 | 76 | 75 | 7.1833E-44 | ||
| PANTHER | 2 | 193 | 192 | 8.7E-95 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| PRINTS | 3 | 23 | 21 | 6.0E-30 | ||
| Pfam | 10 | 57 | 48 | 2.9E-24 | ||
| Gene3D | 13 | 77 | 65 | 3.8E-27 | ||
| PRINTS | 23 | 38 | 16 | 6.0E-30 | ||
| PRINTS | 38 | 59 | 22 | 6.0E-30 | ||
| Pfam | 83 | 167 | 85 | 8.4E-19 | ||
| ProSiteProfiles | 86 | 181 | 96 | 13.293 | ||
| Coils | 120 | 172 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. | ||
| Biological process | Seed development | The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. |
Expression pattern of LotjaGi2g1v0022800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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