Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0061200 |
Transcript ID | LotjaGi2g1v0061200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | MLP; TAIR: AT5G28010.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|Q9SSK5|MLP43_ARATH MLP-like protein 43; TrEMBL-Plants: tr|I3SXL3|I3SXL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0061200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:13093698..13095046) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTGAACTGTATACTCAGATCTACAATTTTCTATTTAAGCGAGTGCATTCCATCGTTGTATGTATTCAAAATTAGATC TCCTTTTAATTGCTAAGAAAAAAAATCTCCTGTGTATTGCAGAGAGCAAAGACATGGCTCAGCAGACTCTAAGTGGCAAA GTGGAGACCCAGATACAGATTCAAGCACCTGCTGCCAGGTTCTACAACATCTTCAGAAAGAAGCTTAATCATCTTCCAAA TATGAGTGCAGATGTACATGGAGCTAAAGTGCATAAAGGAGACTGGGAAAATGTTGGTTCTGTCAAACACTGGGACATTA CTATAGGTACTACTTAAAGTTAATTGGCAGCTAATTTTCACGCAATCATTTTACCGTCATTTTTTTGAAAATTATAAACC TTATTTTACATGTTTACAAATATCTTGTTTTCAAGTTAATTACAAGCGGTGTATACACTACCGAACAATTGATGCATGCA TATGCAAGACAAAGCCAAGTTTGATTATATTTCTCTCACTTTATAGGAGTTAAATATCTTGGCCTTTGTTATTTAATTAA CTTAGTCTCATATAAATTACTCTTTCGTGAAACCTGCAGAAGGTAAGAAAACAATTGTAAAGGAGAAAATTCAAGCCGTA GATGATGATAACAAGCTAATCACATACAGCCTCTTTGATGGTGAAATCAGTGAGGGCTACAAGAGTTTTATTATGACATT ACAAGTTACTGATAAGGAAATCGGTGGGCTTGTGAAATGGACTATTGAATATGAAAAGCTCAAGGAGAACATCACAGCTT CATCTCCTGATACTTTCTTGGCCTTCGCTACTACGGTCACAAAAGATATTGATGCTAATCTCGTTGAGGGTTAATCATCA TTGCAAATTCATGAGGTGGTTGGACCTAACCAATTAATTCAAAGCTCAAATAAATATATTAAAATAAAAGTAAATTAAAA TAAGACATCAAATCTCATATTGAAATTACTTCAATATTGTGTTACACTTTTATTTTGTTGCATATATGTAATAGGCATGT GCATGTGTTCATGCCAAACTTAAAATAAGATATTGCTTTCTAAAGCATCGTGTTGTAATATTTGCTGTGTGATGGATTTG TACTGAGTGATATTTGGATCAGAGTCAATATCCATGTTTATCTGTAATGGAATGTATGTTAATTATTTCGGTAATTACTG CTATATTTTGTTTTATAGGCAAATATTAGTTGTTCATAAATTAATATAAATTATTCTTTCTCAGGATTTGACCAAATAAA TCTCTAATCTCTAATTCTCAATCATAAAGACATGAATGCCCAACAACACCAAAACTAGCTTATGGGTTT
CDS sequence (LotjaGi2g1v0061200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTCAAAATTAGATCTCCTTTTAATTGCTAAGAAAAAAAATCTCCTGTGTATTGCAGAGAGCAAAGACATGGCTCA GCAGACTCTAAGTGGCAAAGTGGAGACCCAGATACAGATTCAAGCACCTGCTGCCAGGTTCTACAACATCTTCAGAAAGA AGCTTAATCATCTTCCAAATATGAGTGCAGATGTACATGGAGCTAAAGTGCATAAAGGAGACTGGGAAAATGTTGGTTCT GTCAAACACTGGGACATTACTATAGAAGGTAAGAAAACAATTGTAAAGGAGAAAATTCAAGCCGTAGATGATGATAACAA GCTAATCACATACAGCCTCTTTGATGGTGAAATCAGTGAGGGCTACAAGAGTTTTATTATGACATTACAAGTTACTGATA AGGAAATCGGTGGGCTTGTGAAATGGACTATTGAATATGAAAAGCTCAAGGAGAACATCACAGCTTCATCTCCTGATACT TTCTTGGCCTTCGCTACTACGGTCACAAAAGATATTGATGCTAATCTCGTTGAGGGTTAA
Protein sequence (LotjaGi2g1v0061200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSKLDLLLIAKKKNLLCIAESKDMAQQTLSGKVETQIQIQAPAARFYNIFRKKLNHLPNMSADVHGAKVHKGDWENVGS VKHWDITIEGKKTIVKEKIQAVDDDNKLITYSLFDGEISEGYKSFIMTLQVTDKEIGGLVKWTIEYEKLKENITASSPDT FLAFATTVTKDIDANLVEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 28 | 178 | 151 | 1.1E-46 | ||
PANTHER | 29 | 177 | 149 | 4.5E-64 | – | |
PANTHER | 29 | 177 | 149 | 4.5E-64 | – | |
SMART | 29 | 179 | 151 | 3.1E-48 | ||
SUPERFAMILY | 30 | 178 | 149 | 3.05E-32 | – | |
Pfam | 30 | 178 | 149 | 1.0E-42 | ||
CDD | 32 | 174 | 143 | 1.08435E-30 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Defense response | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. |
Expression pattern of LotjaGi2g1v0061200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…