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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0077600 |
| Transcript ID | LotjaGi2g1v0077600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT4G30230.1 hypothetical protein; Swiss-Prot: sp|A6Q4I0|GATA_NITSB Glutamyl-tRNA(Gln) amidotransferase subunit A; TrEMBL-Plants: tr|V7BVT5|V7BVT5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0077600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:20800778..20801579) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCTTTCACTTTCAATTTCAATATTCACAGAGCTTCTCCACTTTCATTTCAAACAGCACTCAACGATGAATAGCCAC CCGAAATTACTGAAACCCGGACCCGTTTCCCGCTCCGACTTCGAGTTCCCCACACCTGCTTCTGGTGCCATTTCAAACGA CGTCGTTTTCTGTGGCAAAGTCATAACTCGCCGCACCGAACCCGTTCCAGCACCGCCGAAAGAAAAGGAAACCGAAACCC GCTTTAGTCGGGTCAACGGTTCTGTTGCTGCTCTACGATCGCCGTCCGGAAAAGAAAGCCGGTGCCGGAGGAGCGGAAGT TTGCGGAAGCGTTACAACGGCATGTTTGGGACGGTGAAGTTTCCTTTACAAATGGATTTGAGTGACATCAAGACCAGGCA GGAGCAGAGGGAGGCGGTGCCATTGTCGAAGTTACCGGCGGAGGAAAGCGGCGGAGGCAGTTGCTGGGAACTGGTCGCGC CGTTGAGGCGTCGGGGAACGCTAATGAGCTTCTTGTTATCTAAGGCCACGTTTGGATGCATTCCCAACATTTAGTTTTTT TTTTCCTTTTCTTTTTTGATAAACCCCTTGGTTTTTGGGTTTCATTCTTTTATTAGTTATTAGTTATTACACACCCTTTG ATTTTGTAAATGTGAATGAGCTATTATCCAATCACATTTTAATAAAATCATAAATTAACTCGTCTATGTTTCCACGCCTA ACCTAATAAGCTAGTTAAAATTGGAAAGTTGGTTAAAAATTTATAAGTTAGTTAAAATTTGAAAGCAAAACATTTGAAAA AG
CDS sequence (LotjaGi2g1v0077600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGCCACCCGAAATTACTGAAACCCGGACCCGTTTCCCGCTCCGACTTCGAGTTCCCCACACCTGCTTCTGGTGC CATTTCAAACGACGTCGTTTTCTGTGGCAAAGTCATAACTCGCCGCACCGAACCCGTTCCAGCACCGCCGAAAGAAAAGG AAACCGAAACCCGCTTTAGTCGGGTCAACGGTTCTGTTGCTGCTCTACGATCGCCGTCCGGAAAAGAAAGCCGGTGCCGG AGGAGCGGAAGTTTGCGGAAGCGTTACAACGGCATGTTTGGGACGGTGAAGTTTCCTTTACAAATGGATTTGAGTGACAT CAAGACCAGGCAGGAGCAGAGGGAGGCGGTGCCATTGTCGAAGTTACCGGCGGAGGAAAGCGGCGGAGGCAGTTGCTGGG AACTGGTCGCGCCGTTGAGGCGTCGGGGAACGCTAATGAGCTTCTTGTTATCTAAGGCCACGTTTGGATGCATTCCCAAC ATTTAG
Protein sequence (LotjaGi2g1v0077600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSHPKLLKPGPVSRSDFEFPTPASGAISNDVVFCGKVITRRTEPVPAPPKEKETETRFSRVNGSVAALRSPSGKESRCR RSGSLRKRYNGMFGTVKFPLQMDLSDIKTRQEQREAVPLSKLPAEESGGGSCWELVAPLRRRGTLMSFLLSKATFGCIPN I
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 160 | 148 | 5.9E-46 | – | |
| PANTHER | 13 | 160 | 148 | 5.9E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0077600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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