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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0089200 |
| Transcript ID | LotjaGi2g1v0089200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S24e family protein, putative; TAIR: AT5G02740.1 Ribosomal protein S24e family protein; Swiss-Prot: sp|B1IGD9|RL6_CLOBK 50S ribosomal protein L6; TrEMBL-Plants: tr|I3SLH0|I3SLH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0089200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:26033699..26041453) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTTTGGTGCCCTACGCCTTCTTTCTTCTTTCTTCTCGGTACACTGCTTCCCTGATTTTCTCTCCACTGCGAGCAACA TAGTTAAAGATCCAAGCAGGTACCTTTTCAAAAACATCATCTTTTTTATCTTTTCATTTTACTCTCAGTATCTGCAAACT GCATTTTCCTCCTATAAAATGTGTATTTTGATTCATGGGGTTAGCTGAATATGTGAAAAAAATGCTAAAACTTTGTTGTG GTTTTCTTGGGTTTTTGGAAGTAACAGGTCCCTCGTGAAAGTGAAAATGATGGGCAGTGTTTTCAGAGCCACGATCCAGA GAACAAAATGTAGTGTTTCTGCACTCCAGAGAACTCATGGCCTCCAAGCTTTTGGGCCTAGGTGCTTCTCCACTGAAGCA GAACAGCCACCTCAGCCTCAGGATTCAACAACCCCTACCCCTCCATTCTTTGAAACTGATAATTCAGGTACCCTGCCATT TTACGCATTTGTTTTGTTTGTACCATTTCTGTTATGCGTGGTTTGGTCTTCGATTTTGCTACTTTGCTTTTATGAAATGT TATTTCTCATCATTATTGGTTTATGAAACCGGGTCCATTATGAGGGAAAAAAGTTTGGTTGTTGTTTTTGTTGTGTTATT AGCAGTGTTATCAAATATTCCATCATGGTGGAATCTCATTGCGGCATGGCCGATATCCCGCCATAATTCATCATAATCCT GCATCTGCCATCATTGTTTGTCAAATATGACAGCGTTTACTTTTGGCTCTCCGCCATAGTGCGCCATCCGCCATTAATAA AACTGGTTATTAGAAAATTCCTCATTTTTCAGAGGGTTATGATAAATTTTGACAATTATATAAATTAGTTGTATTTTTCA TTTGTGCAAATGACAGAACATATATACCTGTGCTTGGTACTTATGTTTAGCCTACTAAAGTAGATATGTATTTTTAAATT AAGGTGTTAATCGACATGTTTAACCCTTTCACTGCTATCAATGAGCCTTAATAGCACACTTAAACACTTGTTTATGAGAT TGAGTAATTTCCAGGCAAGGTGATGAATGTGCTTCTTTCTCATTCTCTCATTAGGTTTGACATATGCTAGACTGCATGGC ATTCATAGAAATATGCTCAAAACAGATGTCATCAGCTTCCTCGAAGGTTGCAATTTGACTCTGGAGGATGTTAAAGTCGA GTACAACCGTAACTTTTTTCCATTGGCAATGTAATGTACTCTATCTTTTGTCTTTCTTTGAGAGGATTGGAAAGTTTTAG CTCATTCAGTTGCATTTATTTCCTTTCAAGATGAATGGCATATTTTTTGCTTTAGTTGATGCTTAGAGCAATAGGGAAAG GTCAATTCCACTGTTTGCTTTTTCTATACATATTATGAAATGTATTGCTTTATTGTACTTATCCTGTGGTAGGAACCCAG GTTTCTAGTGGAAATTATCCGAGTCAGAGGCAGAATCATAAAACAGAAAAACGAAAAGTAAAAAGATATACAGCAGTGTT TCAAGGGCCTACTAGCCTTCCTTCTTTCCCTTCTTATTCTTACTAACTGCTCTCTTTTTCTTTCTCAACTGCCACATAAC ATTCTGTTATGTCCCCAGTCCCATCAAGGTGACTCTTCTACTGTATGATCTAGCATAGGGAGTATATAAGTCTAGCATCC TGTTACTGCAAGAGAGTTATTATTTGTATTTAACTAAAATGTTCCCCGTCTTAGATTTTACACATGAAGAGTATCATTTA AAATTGAAGTTTTCACTATTACCAGGCTTCTGCAATTCCCTACTAGAAGTGACTATAGTAATGCTATAAAGGTGAATCTG AAGAATGGTCGGTTTTACAAATTTGAAATGGTATGCTTCTCCACATATATCTGTTGAAATAAAAATAGTTATTAATCAGT TTTGTACATGGTGAATGTTTGATTTGCTGTTTCTTGTCACTGGCATCAGGTTGATCGTGGCCATTGGGATATTGTAACTC CATATGATGGCAAAGCTGTAAGTATAAACTCTCACCTATTTTTGTTTTTCTTCTATTTGATGGATTGCCAAAAGGTGACT ATTGAAAGAGGCCTATTCATCGATGCCTGAGTACAAACAATTTTTTTTGCAATTTGATGACGACATATATTTAATTTGAG TTATTGACATGGATCTATGTTTTTTTTTGCACTCTTTACAGAATGTTTATATAAAAAAAGATGTATGTGGTCAATTTAGA ATGAGTAAAATAGTATGATGTAAAACAGTTTTTTCCTCAGAAGTTAGCACTATAAATAGCTTGCTTTATATTAATTTATT TCTCATATTGATTTGGAAGTCAATCTTAAACAATTTTAAATCTGTTACATAAGACCTTCATGTATTATTTAATTCTTAAT TAGTTGATAATTTGATATAGAGTTCTTTTTGTTACTATTCCCTGGCTGAATAGAAATTGCAGATCCTTGTTTGATCTTTG TTGACTTAGATAATTAAGGAATGTTTATTATGTATGTGTGACAACAATTATTTGAATTAGATTGCTAAGGAAAATGCTAG AGTAAAAGTAATTCTTTTGAATTAGGAGCGGGAGGAATAACAAAGTTTTTCATGTCTAAAAATCTGTATTAATGACTTAC GAACAAATAATTAAGAGTATAACATTCTGACACATGAGCCTTCCTATAACCCAACAATATCAGGAGTAAGGTTCAAACTG TTTGACGGATTGCATTGTTATGCATGCTCATGTCATGGGTAATGGTAGATGGAGACATGACTCAAATATGAGCTAAAATG GAATGTAGATTCAATTGTAAAGGGAATTGCACTGGAACAATAGAGTTCTCATAGTACATAAATGGAAAACAGTGAAACAG TGAAAGAGACTCTCAACTCATGAATTCCACCTGACCTCACCCTCCTTCCCATGATTCCCTATAACTGACTCTTCCACTCC CATTTTTTCTCTCTCGGCTAACGGTTCCACATCAGCCCCCCTCTGGATTTTCCTTAATTGTCCTTTTTAGTCCTAGTACA AACCTTTCAAGTCCTTGGCCTATCTTGCATGGTTAGGTCTATAAAACAGGCCCAGAATATTACGGTTTCTATCATTGCCT CCCCCTTCACTTACAATTTTGTCCTCAAGAGTAAAGTGATGAAACTCACTCCGAGTTGTGGATTCATCCTCCCAAGTGGC TTCTTTGGTTGACTTGTCCTTTCAATGAGTTAGGATCTGAGAACTATCTTCTCCCTGTTTAGTCTCCTTTCTCCTTGCTA ACACTGTCTCAAGAACTTCTTGGTCATCTATGGCCATGCTTGCGGGCAAAGTAGGTTCGACCACCTTATCCCCAATTGAC TTCTTGAGCTGTGAAACATGGAAAGTTGGATGCCTAGATTCTGCAGGAAGTTGTACCTGATAAGCCACCTTTTCTATTTT GTGAGTAATAGGGAAAGGTCCATAGTATCTAGAAGACAATATCTGATACACCCTTCTAGTTACAGATTTCTGTCCACAGG GTCTCAATTTCACAAAAACCAGCTCACCAACTTCAAATTCTACCTCTCCGCATGTTTGTTAGCATACCTTTTCATCTGTT CTTGGGACTTGGTTAGTCTTAGAGCCTCGTCCCTATCCATTAGCTTACGAGCTACCGCCTCAACTTGGACTGCAGAAGGA ACAAATCACATCACAGTAGGAGGCTTGTGGCCATACACCACCTCAAAAGGAGTGGTACCAATAGAAACATGATAAGTGGT GTCATACTACATTTCAGCCCAATGCACCCAATCTGCCTAAAGCTTTGTTTGTTCCAGTACAAAACATTGTAAATAGGTTT CTAAACACGTATTGAAGTGCTCATCAGTATTGAACAGCCCATGCCCTCTTGTCCAAACTGAAGAAGAAATGAATCTGCCC ATCAGTTTCCGCGTTGTCTTCAGAGTTCAGAACTCATTCTCAGCTTGGTAGCTTGGAGTTTAAAGAGCTCTTGCCTGACT CATAAAACCAAGGTCTTTGTCACTAACAATAGACTTGGGTTAGTTGGGTACCCCATGCAACTTGACCATCTCTTCAGAGA ACAACTCTGTTACTGTTTTAGCTGTATGAGGGTGCTTTAATAGTATAAAATTACTATACTTCGATAATCGATCCACCACC ACCATAATTGCTTCAAAACTTCACGATTTGGGCAGTCTCGTGTTGAAGTCCATTGAAAAGTCGTCCCAAATAATTTCAGG AATTTCCAACGGTGGTAGTAAACCTCCCGGGGTTAAAGTAGAATACTTCTGCTTTTGCGAACTGTCATAGTCTTGGGGAA AACTCTTGGATTCTCTTCATTGCGAACCCACATAAATTTGAAGCAATTTGTCTCTAAGTTCAATGCCCTTGAGGAGAGTT AATTCGTTGCTGAAACAAGAAATTCAAACTCTTCTGGTCAGTAAATACCTTGAATAATCTTCCCAGTAGGTAATTTCTCC AATTCTGAATGGATAGAGCTAATGCCATGATTTCTTTCTCATAAGTAGATTTAGGCCCTGTTTGGGAAAACGGCTTAATT AAGCGCTAATGGTCATAAGCGACCAGTCATAAGAGCTTATTCATAAGCTATTTTAAAAAATTTATTGAAATAAATTGAAA ATAACTATATATAAACATAAGCTCTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTCAAAACAGTTTATGGT AGGCCATAAGCTGTTTGCATAAGCTCTCCCAAACACTTGCACAAGCGCTTATGCTATCAAATAAGCTCAAATAAGCTCTC GCAAACAGGGCCTTAGAAAGATTCTGTTTAGACAAAGCCTTGCTGAAGTAGGCAATAAGTCATTTTTTCTTGCATTATGA CAGCCCTCACGCTCCTTAGTCCTTTGTGATGCATCACATTCAATCTCGAAGACTTTGGAAAAGTCAGGTAATGCAAGAAC AGGAGCAGAAGTGACACTCCTCTTTAACTTTATGAACGCTTGGTCGGCCTCCTCTACCCATTGGAACGTATCCTTCTTGG TACAATAAGTGGTCTAGCAATTCTCCTATATCCCGCAATGAACTTGCGGTGATATCTTATCAGGCCCAAGAATCCCTTTA CTCCTGACATTGTGGGGAACTGCCCAAGCAAGAACTGCTTATACATTACCCCTTCTCCTGATATTATAAGACCCAAGTAA GTCTACAGTCCTTCCAATTTGACACTTGTTCAAATTAGTGAAAAACCACTGCTGCAGTAAAGTAGACAGTACAAATTCTA AATGCCCCACTATACACAAATATTTCATTAAAGAATAACAATGCCATCTTCCTTATGTATGGTCAAATTAGCTCATTCAT TGCTGCTTGGAATGTTAAAGGGGCATTGGTTAGCCCAAATGGCACCACCAAGTACTCATATTGGCCATCACGAGTTCTAA ATGCGGTTTTCTGTACATCCTCATCTCTCATTCTAATTTGGTGTTACCCCAACCTGATATCCAGCTTTGAAATATAACAA GAACCATGGCCAATATTTTTCTTACCTTCAGATTCTGAAAATTAGGAATGAACTAAGAACGTTAAAGAATATAACATTTT GGCACATGGGCCTTCTTATAATTCGACCATATCAAGAGTCTGGTTCAAACTGTTTAGGGCATTGCATTCTTATGCATGCT TATGTCATGGGTTACGTGACTCAAATATGAGCGAAATGGAAATGTATATTCAATTGCAAAGGGAATTCCAATGGAACAAT AGAGTTCTTAGTACATAAATGGAAAAAATGAAACAGTGTAATACTCTCAACTCCTGGAATTGAGAGCCTGAGCCAAATTG GCTGCACAATTAGAAAATAACTTCGGCCTGATCGCACCCAGCTTACCATGGTTCTCTACTAGTAGCTCTCTCCCACCCCC CACTCTTTCTCTCTCCGCTAACCGTTCCACATTAGGGCCCTCTCTGGATTTTCCTTAGATGAAACCCTCCAACTCCCTGT CTCGTGTGTATGGTTGAGTCTATTAACAGCAGAGCATCACAGTTTCTATCAGGTAATATGCCTAACTGTATCATAGGTGA AAATGTCATTTAAAATTCAACTTTTTCACATTATTTTATTTATTATGCTTGCAAAGGGTCAGAAAAAATAGAAGTCTGAG ATTTCAGTTTACGCATAACTTACTGAGCTCCGTGTATATAATCAGCAGATTACATAGGTTTCTTTGTATAAATTTTGGTG TTGGTGCGGATGCTTTATGCTTCTATTTATCATTCATTGATGCAATTATAAGTGGACTCAAAACACCACCCTCATCTAAC TGCCTGATTTTGCTAGATTGTAATTCAAGGAATTCCGATGAATGCAGCATTTGAAGACATAGAACGCACCCTGTCTGGTT GTGACTATGATGCATCCTCGGTTTCCATAAGGTTAATGTGTAGTATATGTTATTTTAAATTTGTTTCTGATAGTTAGAAA GTGAGTCTTGGTGCAACAGCAAAAAAGTTGTTCCTAATTCCTATGTGACTGAGGTTACGGGTTCAAGTCCTGGAAACAAC CTTTCATGTAAAAAACAGGGTAAGGCTGCGTACAATAGACCAAGTGGTTGGACCATTCTCCGGACCCGTCCATAGTGGTA GCTTTGATGCACCGGGCTGTCTTTTTTTTTGTTTCTGATAGTTGTTGATACTATGATCCTTACAATATTGTGGCTTTTGC TTGTTCCAGGCCTAGAGATGTTTTATCTAAATTGGCCACTGTACGTTTTCCATCAAGGACTAAAGCAATGAGTGCATTCA TCACAAAGAATAGGACCTTTTGCCTCAACAATCGCGTTTCGGTAGAAGTTCTCCAGTAATACTGATTCACTTAGCTTGTA AGGGAGCATTGCTTTCAAAGAGAGCTTAAAGTAGTAAAATTCATACTCTTTTTTGTGATGTTGGATTTCATAACATCTTT GGTTCAGAGTGTGATGCATGAAAATGTTGAAATTATTGCTGACTGGCAACCATTTCTCGAATAAACACTCGACCCATTAT TGATCAAGGATTTAGTTGTTTGTTTACATGTGCTACCTTTGGTTAAAGAATTCAGGATTTAAAAAAAAGGGGGGACATGT ATAAAACCACCTTGAACTCTAACCCATTTGCAAAGAGATCCTTTAACTTTAATTTCATCTTAATTAATCCCTGAACTTTA AACATTGTTCTAATAAATCTTTTTTTGTTTACCGGAGTTAATTTGTTGATAAGCCAACCCTTAATCCTTCTTATATTTTA GCCATTTAATAAAAATATGTCTTTACTCTCTTCAACTATTGCACTTTTTCAGTGAGATTTGATGCTTGGATGTTTTCGGG TGAGATTTGATGTCGCAATTTCTTCCTCAATCTTAAATTCAAGTCAATTTTATTCATGTTCTCTGGATGGATTTGATAGT TGAGACTTTGATAGGATAGGAAGCTTCTGTTGCTCGCTTGATGTAATGATATATTATTGTGACTCCTTTTAGGAAACCAA AACTTTTCTTAATGGCTCTTTTTTTACGTGTATTAAATTGATCTCACAATTTTGATCGGAATGTGGTTTATCAAATGTAT TATTAAAATGTAATTCTTTAGTATCAAACTTTCGACCTAAAGTTCAAAAATACATTTTTAACCACTACAACTATGATACA TTGAGTTTCTAATGACATGTATGAAGTATGAACAACAATTATTTGACAATTTCATTTTTAAGTTATTTAAATTCC
CDS sequence (LotjaGi2g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGCAGTGTTTTCAGAGCCACGATCCAGAGAACAAAATGTAGTGTTTCTGCACTCCAGAGAACTCATGGCCTCCA AGCTTTTGGGCCTAGGTGCTTCTCCACTGAAGCAGAACAGCCACCTCAGCCTCAGGATTCAACAACCCCTACCCCTCCAT TCTTTGAAACTGATAATTCAGGTTTGACATATGCTAGACTGCATGGCATTCATAGAAATATGCTCAAAACAGATGTCATC AGCTTCCTCGAAGGTTGCAATTTGACTCTGGAGGATGTTAAAGTCGAGTACAACCGTAACTTTTTTCCATTGGCAATGCT TCTGCAATTCCCTACTAGAAGTGACTATAGTAATGCTATAAAGGTGAATCTGAAGAATGGTCGGTTTTACAAATTTGAAA TGGTTGATCGTGGCCATTGGGATATTGTAACTCCATATGATGGCAAAGCTATTGTAATTCAAGGAATTCCGATGAATGCA GCATTTGAAGACATAGAACGCACCCTGTCTGGTTGTGACTATGATGCATCCTCGGTTTCCATAAGGCCTAGAGATGTTTT ATCTAAATTGGCCACTGTACGTTTTCCATCAAGGACTAAAGCAATGAGTGCATTCATCACAAAGAATAGGACCTTTTGCC TCAACAATCGCGTTTCGGTAGAAGTTCTCCAGTAA
Protein sequence (LotjaGi2g1v0089200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGSVFRATIQRTKCSVSALQRTHGLQAFGPRCFSTEAEQPPQPQDSTTPTPPFFETDNSGLTYARLHGIHRNMLKTDVI SFLEGCNLTLEDVKVEYNRNFFPLAMLLQFPTRSDYSNAIKVNLKNGRFYKFEMVDRGHWDIVTPYDGKAIVIQGIPMNA AFEDIERTLSGCDYDASSVSIRPRDVLSKLATVRFPSRTKAMSAFITKNRTFCLNNRVSVEVLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 34 | 53 | 20 | - | – | |
| MobiDBLite | 38 | 53 | 16 | - | – | |
| SUPERFAMILY | 144 | 222 | 79 | 2.15E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0089200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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