Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0104800 |
| Transcript ID | LotjaGi2g1v0104800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A061FFX7|A0A061FFX7_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0104800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:35081245..35083268) extracted from Lotus japonicus Gifu genome v1.2.
TGGACTTTTGGGGTTGTGGTTTATGGCTTGGGTTATTTGGGGTTCACGTGTGCCATCTCCTTCGCCAGTCCACTATCTCT TACCTCTCACCTCTCTCTCTCAGATCTCATCACCGACCCCTCGTCTCTCTCAGTGGCGAAGAAGGACAAGAAGTTTTAAA TCTCTTGCAAGGTGATGGTGGAGCGGTTTTGGTGCAGCACACAATCGAGGCCTTCGTACACGGTGGTCAACCTCTGACGC AATCGCCTCCGACTCGGTGAGGTTCGGCCCTAAGTGGTTCTGGAAGAGGAGGTGGTTGTGGCGGTGACTGTGGATGCCAG AAACGAATAGGACAACGACGATGGATCTTAGATTGGGGAAGGAGGAGGTATCGCACCACTCATCCTCTGCTATTGGTTTG TTGGCCCTTATTCTGTTCCTTTTCTTGTTGGTTCTTTTTTGTTCTCCATGTATCTGTGATGTTTATCCTTCAATAAAATA TTCTGTTTTCCATGTTTTTCCGAAAAAATCTTTGATTTGCTGGGTTTCATCAAATTCTATGTGTTTTTATTTTGAGAAGT TAAGAGATTTTGAAATTTTGGGTTATTTTGAGATTCTAGTGAAGGTGAAGAAGATCTGGGTGAATTTAGTGATCTGAGTG AATTGAATTAAGTAGGGATTTTAGAGATTTTTAAAGTGTTTATTTTTTAATTATTTATTTCATTTTATTTTAATTGTAAT GGACTCATTTGAGGGGCATCTCTGATCATGTATTATGGGAGCTGATTCCCTTTTCTTTATGCTGGAGTATTTGGTTAGAC AGAAATAATCTCATCTTTCAAAATACGAGGTTTGCCACTGAAAACATATGGGATATGCACATCTCAAGGATCGCTTGGTG GATTAAAGCATGGCAAAAGGATTGTTCCTACTCCATGACTGATTTCCTTCTAAACTTTTCGGCAATTTCACTTAGGCCCA CTTTTAATTCACCTCGCTCTGCCTTCTGGTTCCCCCCTCCGGAAAATGTCCTTAAATTCATTGTGGATGGCTCTTCTTTG GGCAATCCGGGGGTGAGTGGTGTTGGTGGGGTTCTAAGAAATTCTTCTAGGCAGATCTTGGGAGTGTTCTCAGAAGCAGC TGGTGTTCTTTGGGCCTACGAGGCGGAGGTAAAAGCCATACGTAAGGCGCTCTTATTCTGTAAACAGTTTCACTACCGAA ACGTACTTATTGAATCTGATTCGTCCATAGCGGTAGGTTGGGTGGCCTCAGTCCATAACAGGCCATGGAAGTTGTGCCAA GATCTAATACAAATTGATCTGCTTATGTCGGAAGTGGAGTGTTTAGGAGTGTCCCATATCTATCGGGAAGCTAATACTAT GGCAGATCACTTGGCTAAGTCCGGATGTCGTAGACTTTTTCCTATCTGGGGGAAATACTGATGTGGTCTCTTGGTCTAAA AATCTAAAATCTGGCATGTTGTTTTGGAGCTGGTTCTGCATTTTGCAGCTTCTATTTACTGATTTTGAATGCTCTGCCTT TGATGTGCTGCTGAGATGCTATCTGATATGCGGTCATTGGGGAGCATCGTTTTTGTTTCCCTTGCAGCTGATGTACTATT GATGTTATCTGATATGTGCTCTTGAGATGCTATCTGATATGTGCTGTTTTGTATTGCTATGTTTTTCTGCACTATTGATG GAGATGATGTTGTCGCCATGGGGTTCGTGTCTCTGGTTATTTTTGCAGCGGCTTTGTAGACCTTAGACTGACCCTTGCTT GCTGCGTGGGTTAGTATTTTTCCTGGGGTAAAGGTTTGCTTTTAGTGGCTGTCTCCAGGTTGTTCTTGGCCCCTCTTTCT CCTAAGTTTTTGGTCCTTGGGGTGTTGTCCAAGTCCTCTCCTCACGTGTGCTGTAGCTGTTTTGGTTTTTGCCTCATCCT TGTTCTTCTTTTATTTTGTTTTCTTTTCTTTTGCTCTGTTGCTAGTTAGTCTTTAGTCTCTTGTCTTTTTCTTTTGGTTA TCTTTTATTCTATTTTCCTGTTGA
CDS sequence (LotjaGi2g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATCTCAAGGATCGCTTGGTGGATTAAAGCATGGCAAAAGGATTGTTCCTACTCCATGACTGATTTCCTTCTAAA CTTTTCGGCAATTTCACTTAGGCCCACTTTTAATTCACCTCGCTCTGCCTTCTGGTTCCCCCCTCCGGAAAATGTCCTTA AATTCATTGTGGATGGCTCTTCTTTGGGCAATCCGGGGGTGAGTGGTGTTGGTGGGGTTCTAAGAAATTCTTCTAGGCAG ATCTTGGGAGTGTTCTCAGAAGCAGCTGGTGTTCTTTGGGCCTACGAGGCGGAGGTAAAAGCCATACGTAAGGCGCTCTT ATTCTGTAAACAGTTTCACTACCGAAACGTACTTATTGAATCTGATTCGTCCATAGCGGTAGGTTGGGTGGCCTCAGTCC ATAACAGGCCATGGAAGTTGTGCCAAGATCTAATACAAATTGATCTGCTTATGTCGGAAGTGGAGTGTTTAGGAGTGTCC CATATCTATCGGGAAGCTAATACTATGGCAGATCACTTGGCTAAGTCCGGATGTCGTAGACTTTTTCCTATCTGGGGGAA ATACTGA
Protein sequence (LotjaGi2g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHISRIAWWIKAWQKDCSYSMTDFLLNFSAISLRPTFNSPRSAFWFPPPENVLKFIVDGSSLGNPGVSGVGGVLRNSSRQ ILGVFSEAAGVLWAYEAEVKAIRKALLFCKQFHYRNVLIESDSSIAVGWVASVHNRPWKLCQDLIQIDLLMSEVECLGVS HIYREANTMADHLAKSGCRRLFPIWGKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 178 | 136 | 6.7E-32 | – | |
| PANTHER | 43 | 178 | 136 | 6.7E-32 | – | |
| ProSiteProfiles | 49 | 179 | 131 | 12.658 | ||
| Gene3D | 52 | 179 | 128 | 9.0E-23 | ||
| SUPERFAMILY | 53 | 181 | 129 | 1.24E-19 | ||
| CDD | 57 | 175 | 119 | 1.08227E-27 | – | |
| Pfam | 57 | 176 | 120 | 6.8E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0104800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…