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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0123400 |
| Transcript ID | LotjaGi2g1v0123400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT5G52545.2 RNA-binding protein-like RNA recognition motif protein; Swiss-Prot: sp|Q66J99|RBM18_XENLA Probable RNA-binding protein 18; TrEMBL-Plants: tr|G7JDR6|G7JDR6_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi2g1v0123400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45235967..45238403) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGAAATTAAACTCCACACGAAAAAGACAAAGGAATTTTTGGGCCGTGTTAAGCCCAGTTCTGTGTACTTGAACTCTT GAAGCATCCCGACCTTCTTCGTTTCTTCGTCGTTCTTCTTTTTCTTCTTTGAGGGAGAGAGAGAGAGAATAAAACCCTAA TTCATTGCTTTTCTTCTGTTTGCTACAACCAGAGGCTCAATTTCTCTACACGGTAACCCCCTCGTCATCAATTTTTTTTC TTTAACAAAAAAATTGGTTATTTGATTGTGTAATTGAAATGGGAATTTTTCTAGGTTTTGATCGAAACCCATTTTGCAAA ATTGAAAATTTGATCACTTGTCCAATTTTTTTTCCTCTTGTCAATGTGTAGTTTTTGTTTTTGCTTTTGGGCATATGAGC TTTTCATTGAATTTATATGCACCTGACCTGGGGAACTTCAATAGTGTAGAGGGTGGCAAGCAATTGTTATTCAAGAAAAT CTGGATTCATATATCTTTTTGCCTCTTTAGATATTGTAGATAAATTTTTTGATTGCACCGGATGTCGCATTTGGTCGCTA AGTGATGATTGTAACACTACTGCATTTGATGGGCAATATCTAAGTAACCCTATCTAAGTTGATTCTGTCAACCAATGTTA CGAATTACTGTTTTGAGTAAATGGCAACGACTCGAGTGTTATAGTAGTTTGTTCATTTGCAGGGCAATGAACATTTGATG CTTCCGAGTCTTGGTTGAAGTTTCACTAGCTTTCTTTGCTATCATGGTATGTTCAATGTCTGGTCTCTCACTATATTTGT GTTTATTTATTGTTTGATAGATTCAATTTTCTGCGGATTTAGGTTTTTTTTCATGCTGTTATTCACGGCTGGTGCAGAGG TCTTGCAATGTCTTATTTCTAATACAGTAATACTACTAAGTTTTCGTCTAAGAGAATAATGCATTGTGCAGATTGCTGTT TTTGACTTGTTAATATGGCAAGCATCTTCTTTTATCTTTTTTGCATGTTGAAAGAAATTCAATCGGATGTATGTGCCTAG GTAGGAGATGGAATTCAATTGGACAGAAAAATGTATGACAAATTGGAATGGCAATATATCCTCCTTAAAAATACTGCAGC AAAAGAGCATGTCCCACCCATGGATATTACTTTGGGAATAAATTCATATTTTGGAATTATTAGAATTTACTTAACTAACA TGATAGCATCTAAAATTGATCTGGTGGATTTTGATATTACCAATTTCATTGTATTCTGGAACTTATTTTATGTTTTGCTG AATGCAGGATCCTTATGGTTCTATTGATGACAAGTGTGAAAATAGACTCTATATTGGTAACCTTGATCTCAGAATTACAG AGTGAGTCTTCCTAACTCCCTACTAACAAGTGTTTTTTTTGTCAAATGCTAAAAGAAGGTACTGGTTTAAGGGATAAAGA TGTAAAGTTTGTATTGAAAAGTACAGTTTTGTAAGTTATTAATGTATTAAGTACTGTAATTTTCAATATATACTTTCATC TCTTTTCATAACCTGTGCCTTTAAGACACTCAATAGCAAAACATTTTTTACCCTGTGCTTCATACACTTCTTATTCTCTT TTTTTTTTCAACATTTCCAGAGCTGCTCTGCTTAAATTGTTCTCTCCTTATGGAAAGATCGTTTCTGAGGACTTCTTATA TCACACTCGTGGCCCAAAACGCGGGGAACCGCGCGGTTTTGCTTTTATCCAGTATAGCACGAAAGAGGTACGTTGATTGA ATACTTTTGTTACTTCACTCTCAGGCAATCCCTGATTTCCATTATTAAAGTGAGAATGCAGGAAGCAGAATTGGCCAAGG AGAAAATGCATGGAAGGTTCGCTTGCGGCCGGCCATTGGTTGTTCGTCTTGCTAGCGAGAAGTACATGTTGGAAACAGCT GATATGTCTTCCAAAGTAGCAGGTGGAGGGCACAAGGTGCATCTCACCGGTGGCGGTGTGGGACAGACGACAAGTCGTAC TGCAAAAATAGCTGCAATAAAGAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTGGGACCAAGAAACAGAAGCAAACTT GACAATATTTCTTGAGTCAATTGTATAATCTGTAGAGCAGTGACGTATAAATAAAAATGTGGAGCAGTTGTGTATTAAAT TGGAATTCATGTATTTGATCCAGCTTGGTTTTTTCAATTCATGCCTGAAGCTAGAATTTTAACTGCATGAAACCTACTAT CCACTTGAAATTCTCCTATTAGAAATTTGACAGAGGATTGTCTGTATTAAATCTGAAATTCTGCTTTTACCTCGACATAC GTTTTGTTTAGCTTCTCCAAATTTAGGTGGAATCTTAATTTTAAATGAAATGGAATCACAATTTCTGAGATTAAAAATTT ATGGACAATGTGTTTTTTTTTTCCGGCTGAATTGGCA
CDS sequence (LotjaGi2g1v0123400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTTATGGTTCTATTGATGACAAGTGTGAAAATAGACTCTATATTGGTAACCTTGATCTCAGAATTACAGAAGC TGCTCTGCTTAAATTGTTCTCTCCTTATGGAAAGATCGTTTCTGAGGACTTCTTATATCACACTCGTGGCCCAAAACGCG GGGAACCGCGCGGTTTTGCTTTTATCCAGTATAGCACGAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGAAGG TTCGCTTGCGGCCGGCCATTGGTTGTTCGTCTTGCTAGCGAGAAGTACATGTTGGAAACAGCTGATATGTCTTCCAAAGT AGCAGGTGGAGGGCACAAGGTGCATCTCACCGGTGGCGGTGTGGGACAGACGACAAGTCGTACTGCAAAAATAGCTGCAA TAAAGAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTGGGACCAAGAAACAGAAGCAAACTTGA
Protein sequence (LotjaGi2g1v0123400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPYGSIDDKCENRLYIGNLDLRITEAALLKLFSPYGKIVSEDFLYHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGR FACGRPLVVRLASEKYMLETADMSSKVAGGGHKVHLTGGGVGQTTSRTAKIAAIKNKLKSLEEESSGTKKQKQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 99 | 96 | 1.9E-22 | ||
| SUPERFAMILY | 8 | 98 | 91 | 3.49E-24 | ||
| PANTHER | 10 | 153 | 144 | 3.6E-48 | – | |
| PANTHER | 10 | 153 | 144 | 3.6E-48 | – | |
| ProSiteProfiles | 13 | 94 | 82 | 17.182 | ||
| SMART | 14 | 90 | 77 | 8.4E-21 | ||
| CDD | 14 | 93 | 80 | 9.95086E-33 | ||
| Pfam | 15 | 87 | 73 | 4.1E-16 | ||
| Coils | 131 | 151 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0123400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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