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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0124800 |
| Transcript ID | LotjaGi2g1v0124800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT1G01490.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|O03982|HIP39_ARATH Heavy metal-associated isoprenylated plant protein 39; TrEMBL-Plants: tr|I3S8H5|I3S8H5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0124800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45837251..45838475) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGCACAACCTTAGCTTCAATTCCCCACTTCAATTGTGAACAAGGAAATCCATTTCCTACTCTTTAATTAGCTCTTCT AGTTGCCTAGCTCATCTTTGTCTTCTTTGAAACTTTAACCAACAATTCTTTCATAACTATCAGAAATCAGAATCTTCAAC AAAAATGATGGTAAGAATTACCCCCTCATGCCAATTTAATCGCTTTTATCTCCTTCATCTCGCCTCATATTCATAGCATG TTTGGATCAACTTTCATTTTCTCAAAATTAATTATAGCACCTAGAAGTTACTTAGAAAATTGTCTTCAGTTTTCTCTCAG TTTTCCTCTGTTTACACGCATAGCTCATGAAGTTTTCCATTTTCACTATGAATTTTTTTGCTATGAATTTGATACTTTGA TGTTTAAAGCAAAAAGCTGGGGTTATGCTGGATTGTTTTCTTTACATGGTACAATTGAAGTGAAGTAACTGTTGGGGCCC TAAAGCACTCTTATTTGTTTTGTTACAGAAACTAGTGTTAAAGGTAGAGTTACATGATGACAAAATCAAGCAAAAAGCTA TGAAGTCAGTCTCTGGCATTTCAGGTATTCAATTGAACAATTATCTTCCTCCTATTTCAGTTTCTCTAGTCTCTAGTTTC AACAAACTAGCTAAGCTTGATAAAAACTCTACATTCACTTCTACATAAAAAAAGAATGAACACACACATCGTATAATGTA TTTGGTTTATCTTTGCAGGGGTTGAGTCTGTTTCTGTGGACATGGGAAGCAAGAAATTGACCTTAACTGGAGACATTGAT CCTGTACATGTAGTGAGCAAACTAAGGAAGTGGTGTCATACTGAAATAGTTTCTGTTGGACCTGCAAAAGAGGAGAAAAA GAAGGAAGAATCATCTAAGCCAGATCAACCAAAATTGCCTGAGCCAGTCAAGTTCTATGAAGCTTATCCCCTTTATTATC AGACAAGACCATCACAATACACTCAATATCATTATGTTCAAAGTGTTGAAGAGGATAATGTTGGGTGTGTCATCTGTTGA GTTTCAGATTATACCAGAGAGCTTTATAAAAGAAGAAAGATTGTTTTTTCCCCCTTTTTTAAATTTAAGGCTTTTTCTCA TGGTTTCTGCTTTATTTGTTTTTTTTACAATTGGGGAATTAAATGATATATGATGAAATCATGAAATAGAATTGAATGTA TCATTGTTTACGTTGTCTCCTTTGT
CDS sequence (LotjaGi2g1v0124800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCAGTCTCTGGCATTTCAGGGGTTGAGTCTGTTTCTGTGGACATGGGAAGCAAGAAATTGACCTTAACTGGAGA CATTGATCCTGTACATGTAGTGAGCAAACTAAGGAAGTGGTGTCATACTGAAATAGTTTCTGTTGGACCTGCAAAAGAGG AGAAAAAGAAGGAAGAATCATCTAAGCCAGATCAACCAAAATTGCCTGAGCCAGTCAAGTTCTATGAAGCTTATCCCCTT TATTATCAGACAAGACCATCACAATACACTCAATATCATTATGTTCAAAGTGTTGAAGAGGATAATGTTGGGTGTGTCAT CTGTTGA
Protein sequence (LotjaGi2g1v0124800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSVSGISGVESVSVDMGSKKLTLTGDIDPVHVVSKLRKWCHTEIVSVGPAKEEKKKEESSKPDQPKLPEPVKFYEAYPL YYQTRPSQYTQYHYVQSVEEDNVGCVIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 49 | 49 | 1.0E-13 | – | |
| PANTHER | 1 | 108 | 108 | 1.5E-36 | – | |
| PANTHER | 1 | 108 | 108 | 1.5E-36 | – | |
| Pfam | 1 | 39 | 39 | 1.2E-6 | ||
| SUPERFAMILY | 2 | 41 | 40 | 3.14E-5 | ||
| MobiDBLite | 49 | 66 | 18 | - | – | |
| MobiDBLite | 49 | 70 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0124800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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