Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0132500 |
| Transcript ID | LotjaGi2g1v0132500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor, putative; TAIR: AT1G21200.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|Q6GLA1|MSD4_XENTR Myb/SANT-like DNA-binding domain-containing protein 4; TrEMBL-Plants: tr|A0A0L9TZE4|A0A0L9TZE4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:48034874..48037151) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGAATCCAGTGTTTATAAATACTTTAGTTGAAAAGTAGCATGCTCAGGAACCCATTTTTGTCTTTAGTGCTTCACTC CTTTTCTTCTCTTCTCCTTTGTTTTGTTGTGCACTTTTTCATTCTTCCTCCTGAGTTACACAGAAGATGTGCTTCTCGTG ATTTTCATCTCTGAATTCTGGGCTTGATTCGAGAAAAAAGGTCCAATCTTGACATCTGGGTATATGAGATTCTGTGCAGA TTTCCATCAGATGAGTAGCTGAGCTTCCTCACTGCTGAGCCTTTGAAAGGTGTTTTTTTCAACTAAGCTTTTATTGTGAA TCTTTGTTGAACATTTTCCTTTTATTTTTCTGCTGGGTGGATGTTTGAGAAATTGGGTGGGTCCCTCTGTTGGAATCTTA TCTTTTTAATGTTTTGGGGTTTGGAATGTTGGGGTCTGAAATGGGGTTTTATAGAAGGGTTCCAGTTTGATTTGATAGTT TTTTTAACTTGAAGATTTTGAAGGATAATAGTTGAGAGCTTGGGATTGGAAAATGTATTGAAAGATTGAAAAGACATGGG TTTGTATGTTTGCAATCTGTATTTTTGGTGAATTATGAAATGCTTTTCAAAATGTGTGTGAACTAGGATTGGAGGTGGAA TGGTTCATTGGTCTGATCTGTTTTGTTGTTTGTAAGAAGGAATGGAAGGGAAGATGTCACAGGGAGGTGTAGCTCAAGGT GGGGCTTCTTTTGGTGGTTTTGATTTGCCTGGAGCAATGCCGATTCATCGTCACACACAGCACTCGCATACCATGAACCA ACATCAAACTCATGCTTGCCAAGGGTCTTCAGTGCGTCCCTCAAATCATGATGGTTTTCCTCTTACCATGGGAACCCTGC AGAACTGTGATCAGCCTATGTCAATGCCAGAGTTTAATCAGGGAGATAGAAACAAAAACTCAGCAAGTGAGGAAGATGAG CCGAGCTATGCTGAGGAAGGTGTCGATGGTCATCATCATGAAGCGAGTAGAGGGAAAAAGGGGTCGCCTTGGCAGCGGGT GAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACAGCTGTGTCTTATATAGGCGACGATTCAACTTCTGATGTTGGCA GCGGAGGACGAAGAAAATTTCCAGTCCTGCAGAAAAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGAGGT TATCATGTTTCCCCTCAGCAGTGTGAGGATAAATTTAATGATCTTAATAAAAGGTATAAAAGGCTTAATGATATGCTTGG GAGAGGCACGTCGTGTCAGGTTGTTGAAAATCCTGCTCTGTTGGATTTAATAGATTATCTTTCTGAGAAAGAAAAGGATG ATGTTCGGAAAATATTAAGCTCAAAGCAGCTCTTTTATGAAGAGATGTGTTCTTACCACAATGGTAATAGATTGCATTTA CCCCATGATCTTGCATTGCAACGATCGCTACAGTTAGCTCTCCGAAATAGAGATGACTTCGAAAATGATGATATCAGAAG GTCCTATGATGATGATCATGATGAAGATGACCAAGATATCGGAACCGATGATCATGACGACCTTGAAGAGAATTATGCTT CTCATGGAGAGAGTAGAGGAATCTTTGGGGGATTGGGGACATCTACAAAAAGACTTAAACAAGGAGAAAGCCAAGAAGGT GCTGCTACTTTTGGGAATTCTTTAAAGAGTCATGGACCGATGGTCCAATCTGATGCCAATCAAGCTTTACCTGAAAGCAT GAGAGCGGCTTGGTTACAGAAGCAATGGATTGAATCTCGGTCACTTCAGTTAGAAGAACAGAAGCTACAGATTCAGGCTG AGATGCTAGAACTAGAGAAACAAAGATTGAAGTGGCAGAGGTTTAGTAAGAAAAAAGACCGGGAGTTGGAGAAGATGAAG CTGGAGAATGAAAGAATGAAGCTAGAAAATGAACGTATCGCTTTAGAACTAAAGCGTAAGGAAATTGGCACTGGCTTTAA CTAGGTTGGCTGTCTTGCAAGCTTTTGGCAATGGCATTACATGTATGCTACTTTTTATTTCTTTAAAATTTTACTGATGT CTTTGGTAAGATGTGGACTATCTAGTTTAAAGTAAACATTTTTGACGGGGAAACTTGAGGAAAGAATTAACCCTCCCCCT TAATGCTTTTAAGATATGTGAGTTTAAAATGAGATTGACTAGGCTTTGTTGAAGCTTTGTTTCCTGAATTTAATTAGTCT GTAGCTGAAATCCCTTTATTTTATTTTGGAATATCAAA
CDS sequence (LotjaGi2g1v0132500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGGAAGATGTCACAGGGAGGTGTAGCTCAAGGTGGGGCTTCTTTTGGTGGTTTTGATTTGCCTGGAGCAATGCC GATTCATCGTCACACACAGCACTCGCATACCATGAACCAACATCAAACTCATGCTTGCCAAGGGTCTTCAGTGCGTCCCT CAAATCATGATGGTTTTCCTCTTACCATGGGAACCCTGCAGAACTGTGATCAGCCTATGTCAATGCCAGAGTTTAATCAG GGAGATAGAAACAAAAACTCAGCAAGTGAGGAAGATGAGCCGAGCTATGCTGAGGAAGGTGTCGATGGTCATCATCATGA AGCGAGTAGAGGGAAAAAGGGGTCGCCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACAGCTG TGTCTTATATAGGCGACGATTCAACTTCTGATGTTGGCAGCGGAGGACGAAGAAAATTTCCAGTCCTGCAGAAAAAGGGT AAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGAGGTTATCATGTTTCCCCTCAGCAGTGTGAGGATAAATTTAATGA TCTTAATAAAAGGTATAAAAGGCTTAATGATATGCTTGGGAGAGGCACGTCGTGTCAGGTTGTTGAAAATCCTGCTCTGT TGGATTTAATAGATTATCTTTCTGAGAAAGAAAAGGATGATGTTCGGAAAATATTAAGCTCAAAGCAGCTCTTTTATGAA GAGATGTGTTCTTACCACAATGGTAATAGATTGCATTTACCCCATGATCTTGCATTGCAACGATCGCTACAGTTAGCTCT CCGAAATAGAGATGACTTCGAAAATGATGATATCAGAAGGTCCTATGATGATGATCATGATGAAGATGACCAAGATATCG GAACCGATGATCATGACGACCTTGAAGAGAATTATGCTTCTCATGGAGAGAGTAGAGGAATCTTTGGGGGATTGGGGACA TCTACAAAAAGACTTAAACAAGGAGAAAGCCAAGAAGGTGCTGCTACTTTTGGGAATTCTTTAAAGAGTCATGGACCGAT GGTCCAATCTGATGCCAATCAAGCTTTACCTGAAAGCATGAGAGCGGCTTGGTTACAGAAGCAATGGATTGAATCTCGGT CACTTCAGTTAGAAGAACAGAAGCTACAGATTCAGGCTGAGATGCTAGAACTAGAGAAACAAAGATTGAAGTGGCAGAGG TTTAGTAAGAAAAAAGACCGGGAGTTGGAGAAGATGAAGCTGGAGAATGAAAGAATGAAGCTAGAAAATGAACGTATCGC TTTAGAACTAAAGCGTAAGGAAATTGGCACTGGCTTTAACTAG
Protein sequence (LotjaGi2g1v0132500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGKMSQGGVAQGGASFGGFDLPGAMPIHRHTQHSHTMNQHQTHACQGSSVRPSNHDGFPLTMGTLQNCDQPMSMPEFNQ GDRNKNSASEEDEPSYAEEGVDGHHHEASRGKKGSPWQRVKWTDKMVRLLITAVSYIGDDSTSDVGSGGRRKFPVLQKKG KWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDLIDYLSEKEKDDVRKILSSKQLFYE EMCSYHNGNRLHLPHDLALQRSLQLALRNRDDFENDDIRRSYDDDHDEDDQDIGTDDHDDLEENYASHGESRGIFGGLGT STKRLKQGESQEGAATFGNSLKSHGPMVQSDANQALPESMRAAWLQKQWIESRSLQLEEQKLQIQAEMLELEKQRLKWQR FSKKKDRELEKMKLENERMKLENERIALELKRKEIGTGFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 116 | 116 | - | – | |
| PANTHER | 1 | 438 | 438 | 2.0E-200 | – | |
| PANTHER | 1 | 438 | 438 | 2.0E-200 | – | |
| MobiDBLite | 38 | 83 | 46 | - | – | |
| MobiDBLite | 84 | 116 | 33 | - | – | |
| Pfam | 119 | 244 | 126 | 4.0E-24 | – | |
| Gene3D | 122 | 194 | 73 | 6.9E-9 | – | |
| MobiDBLite | 276 | 346 | 71 | - | – | |
| MobiDBLite | 323 | 346 | 24 | - | – | |
| Coils | 372 | 399 | 28 | - | – | |
| Coils | 402 | 434 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0132500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…