Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0141600.1

Overview

Field Value
Gene ID LotjaGi2g1v0141600
Transcript ID LotjaGi2g1v0141600.1
Lotus japonicus genome version Gifu v1.2
Description Transcription factor MADS box; TAIR: AT5G60440.1 AGAMOUS-like 62; Swiss-Prot: sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62; TrEMBL-Plants: tr|B3IX42|B3IX42_LOTJA Transcription factor MADS box; Found in the gene: LotjaGi2g1v0141600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:51506769..51509169) extracted from Lotus japonicus Gifu genome v1.2.

TCTATTTCCAACTGTTTATTCATACACTGTTAAGTAGAGAAATACTACGAACAAGTGTGTCTCTAGAGCACTATTCTTTC AAAATGAATTTCCTACCATATTAACTATGCAAGGGGATATGCACAATCTCTTAATCAAGAAATATTTCAATGCAATGAAA AGTTACGCCTATTAAATGTCTATAAAAAGACTCCTTCACACCCATTCTAAAATGTGCTTGCAACACATCCTTTAGACCCG CAATTTCTCTTGATTTCATTCAGCCTGCAACCATGTCAACCTCCAGAAGGAAAAGTCTCGGAAGGCAAAAAATTGAAATG AAAAAAATGACAAATGAAAGCAACCTCCAAGTCACTTTCTCAAAGCGTCGTAGTGGACTCTTTAAGAAAGCCAGCGAGCT ATGCATCCTATGCGACGTGGAGATTGCTCTTGTTGTCTTCTCGCCAGGTGAAAAGGTATTCTCTTTTGGCCACCCAAGTG TTGAGGCCGTCATCAAGCGCTACTTCTCTCAAGCACCACCCCAAACCTCTGATACCATGCAGTACATTGAGGCTCAACGC AACTCCAAGGTGCATGAGCTCAACGTGGAGCTCTCTCAAATCAACAACCTATTGGACACCGTGAGGAATCACGGTGAGGA GCTGAATCGCCTACACAAGGCGGCACAAGCTCAGTTTTGGTGGGCTTGTCAGATTGAAGAGATGGATAGGCCTAAGCTTG AGCAATTTAGGATGGCCTTGAATGAGCTTAAGAAACAGATCAGTCGCTATTGTGACAGGACTCGCATTCATGGTGCTCCC GCTGCTAGTACTGCCACTACTAACCCACCAACTCATATGTTTTTTGCTTCTGGTTCGTCCAATGTCATGATCCCTCCCCA CCACCCACAATCACCTCCTCCTCAGGTGTTTGCACCACAGTTTTTTGAGGGCTCCATGAAGCAGGGCCATCATTTGTTTG GTGGAATATTTAACAACATGGGAGCATACGATGGACCCCCTGGCTTCTACTAAGATCATCATCCCATGACGATATGATGA AGATGATGCCCTTTCTGTTTTCTAGTCTAGTATTGTTTTTAATTTCCATAGCACACAACCTTAACTAGTTTCATGTATGA GATATAGTTTGGGTTGCTTATGATTTGAATTTCAATTACCGTTGGATGTGTTGTTTTTGAATGTGTTCCCTTTATGTTAT TTTCCTACTGTGTAGTTGGCAACCATTGTGGTGTAGCTTTATATATCTATTATTCAAATAAAGATAAAGGGCATCTTATT GGGAAAAAATTTCTCTTTATGTCATTTGACTCCAAAATTAAACTTAATTCCTTCGTTTTGAAACAATTTGGTATAGAATG GTTAGGGTAGGGGACTTTAAAATTATCAAGTAGAATTAGCTAAGGATGATAAAGATCTGGGCTAAAGTCATCCAAAAATT TAAAAATAATTTATGTTGAATTTTTCACACGATGTTATACCAGGCTAGATTATGCATATATATACCATTTCATGTACGTT ATTTAGATTAATGCTGAAGATATTATTGAAAAATTAGCCAAAATTATAAAATATAATAATTTGCAATTGCGTTGTTTTCA ATCGGACATGACTCTTCAAGAGCACCGCTTCATATTCTTAAATGACCATTAAATCATACTTTTATTTATCTACATTTCTT TTTTTTTTTATCTCATTTTCAATATTTTTTATACAATTTGTGATCATTTTTAATCAATTATAGATTGAGTTTTTTTATAA AAGTAATTATAGATTGAGTTAATTTCTAAATTTCTATGTCAAAAAAAATTTAAAATTTTATTGTTACAATTCAAAATATT TATTATGTTATTTTTTTTTTTGTTACAAGGAGGGGGAGGCCAAGCAAAAAGCTAACCAGCAACACTAGAACTAGTGCCAA TATCTCTAGCAAGAAGAGAATGTCATTCACCAAATCGACTATCAAAGCCATGAATTCCATAGTGGTGGTTCAGCCCAACC TTGGCTAAATAATCCGCCAAAGAGTTAGAAGTCTGTGGCGTGTGTGGGAAAAACAAGCTACCATAAGCTGCCTGAAGCTG AAGGATCTTCGAGACCACCTGCTCATAACGGTGAGTTCTAGTGTCCTGGGAACACAGCAGAGACACTAACTCCAGCGAAT CTGACTCGACAATCACCTGGGTTAAATCTAAGGCCATGACAAGCTCCACCGTCGTCTCCACTGCCAGCTACTCAGTGAGA AAGACATTCGTCGTTGCTATCGTCCCCAGGTTACGACTGAAACCTGTGATCCAATTGCCCTCCGCATTGCGAATCACGTC ACCCCAACTAGAAACAAAACTAGAGCTGACAGCCCCATCAATGTTCATTTATGTTTTTTTTTTATACATCGGAAGAATTT A
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCTCCAGAAGGAAAAGTCTCGGAAGGCAAAAAATTGAAATGAAAAAAATGACAAATGAAAGCAACCTCCAAGT CACTTTCTCAAAGCGTCGTAGTGGACTCTTTAAGAAAGCCAGCGAGCTATGCATCCTATGCGACGTGGAGATTGCTCTTG TTGTCTTCTCGCCAGGTGAAAAGGTATTCTCTTTTGGCCACCCAAGTGTTGAGGCCGTCATCAAGCGCTACTTCTCTCAA GCACCACCCCAAACCTCTGATACCATGCAGTACATTGAGGCTCAACGCAACTCCAAGGTGCATGAGCTCAACGTGGAGCT CTCTCAAATCAACAACCTATTGGACACCGTGAGGAATCACGGTGAGGAGCTGAATCGCCTACACAAGGCGGCACAAGCTC AGTTTTGGTGGGCTTGTCAGATTGAAGAGATGGATAGGCCTAAGCTTGAGCAATTTAGGATGGCCTTGAATGAGCTTAAG AAACAGATCAGTCGCTATTGTGACAGGACTCGCATTCATGGTGCTCCCGCTGCTAGTACTGCCACTACTAACCCACCAAC TCATATGTTTTTTGCTTCTGGTTCGTCCAATGTCATGATCCCTCCCCACCACCCACAATCACCTCCTCCTCAGGTGTTTG CACCACAGTTTTTTGAGGGCTCCATGAAGCAGGGCCATCATTTGTTTGGTGGAATATTTAACAACATGGGAGCATACGAT GGACCCCCTGGCTTCTACTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTSRRKSLGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSFGHPSVEAVIKRYFSQ APPQTSDTMQYIEAQRNSKVHELNVELSQINNLLDTVRNHGEELNRLHKAAQAQFWWACQIEEMDRPKLEQFRMALNELK KQISRYCDRTRIHGAPAASTATTNPPTHMFFASGSSNVMIPPHHPQSPPPQVFAPQFFEGSMKQGHHLFGGIFNNMGAYD GPPGFY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11945
8 175 168 3.3E-54 –
PANTHER
PTHR11945:SF164
8 175 168 3.3E-54 –
ProSiteProfiles
PS50066
9 69 61 25.553
IPR002100
SMART
SM00432
9 68 60 6.5E-34
IPR002100
SUPERFAMILY
SSF55455
10 92 83 5.1E-29
IPR036879
CDD
cd00265
10 77 68 4.38763E-38
IPR033896
PRINTS
PR00404
11 31 21 7.4E-21
IPR002100
Pfam
PF00319
18 65 48 2.7E-24
IPR002100
Gene3D
G3DSA:3.40.1810.10
21 102 82 8.6E-29
IPR036879
PRINTS
PR00404
31 46 16 7.4E-21
IPR002100
PRINTS
PR00404
46 67 22 7.4E-21
IPR002100
Coils
Coil
149 169 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0141600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…