Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0145800
Transcript ID	LotjaGi2g1v0145800.1
Related isoforms 2	LotjaGi2g1v0145800.2 LotjaGi2g1v0145800.3
Lotus japonicus genome version	Gifu v1.2
Description	Peptidyl-prolyl cis-trans isomerase; TAIR: AT5G52200.1 phosphoprotein phosphatase inhibitor; Swiss-Prot: sp\|P50411\|IPP2_RAT Protein phosphatase inhibitor 2; TrEMBL-Plants: tr\|I1MPZ2\|I1MPZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:52530601..52536920) extracted from Lotus japonicus Gifu genome v1.2.

AATGTGCTTTTGTAATTTGGGAAAACAAAAGGGGCACTATTAGAAATAGGAAATGTTGAAGGGAGAAGAGAAGAGTCTTC ACTTTTCATATTCCCTTTAGCAACTGCTTGCAGCTTCGCACTGCAATCGCTTCTGTTTTGGAGGTAAAATCTCCGACCCT CACTTTCTCATTACATGCTCCCCAACTTTCTCTCGCAGTGTTTGTTTCCCGAGAAAATAGAATTCAGTTTTTGTTTATCG GTTGGTGGCTAGGGTAGATAGACTTCAATGCTCTCAACTTGATTGTTCTCATTCAAAGTTCCCAAACGAGCGTTTTAGGT TTTGGTTTTTTTCCGAATTGAGGATCCAATTGGTTGCAAATTATGAACTGTTTCGACTATTAAGTGTCACGATTTTCAAT TTGTGATTTTTCATGTTCATTAGAGTCAATGTTTTTGGATTTGTCGTTAGTTGGTGTTGTTCAATGTACTTGAATGGTTT TAGCTTCTTTGTTCTTCGTCTCACGTGGGTTTCTGCTGCATAATGAAGTTGCTTTATGTTGATTTATAGTGGTATTTGTT TTTCCCTGCTGGATTTGGTGATATTATGTAAGCTTGGTTTCAATGGACTTGTGTATTGTATAACCCCAAGCTTGGTGATA TGAAAGGTTTTCAATTGTCTTTCACCTACTTGAATTGAAAGCATATGTTAGAAATCGTTTTGGATCTGCAATTTAATAAT CATAGTTGCAGAATAATTATGTGTCCATTCTGGAGTTTTGGGTTCATTTGGATTACGTAGAATTTTATGCTTATAACGAG TGTTCGAATGACCAAAGGAGCATGTTCCTTTACTTATTATGGGTGTCGAGTTAGACCATAAAATCATTGGAAGTTGGAAT GAGGATGCAGTATTACTTGTTTGCAGTAGGGGCTTTAAACAGATGTCTCACAACTATATTGCTTAGAGTACAGTTTCACT TTGATACCAAACCATGCAATCTTTTTCTTACTTCTTATTTATGTTGCAATCGATCAGCTTTGTATGTAAATCAAATGTTT CACTCTAATTATGAATATTAGTTTAGAAGTTAAGCTTTTTTGTTTAGATTCTTTAATGGGGTATGTTTTTCCTTTGCTTC TTCATCAAATTCTTAGTTCACATTTTATCTCTCAATTTATCATGTCTCTAGCTTGTTTACAATGGTATATCTGCTTAGTT TTTATACTCTTATCTGTTTATCCTTTGATTTTCTCTTTATATATTTGTGTCCTTGAAGCTTTAGGACTTACTGCATATGC CTCTTATGTTTTTTTCAGTTGATCAAGCCACTTGAGGATCGCCTTGCACAATTGAGGTGTTTGAAGAGCTCATCCATCTT CCAAAATGAAGTAATGCACGAAAAAATCTTACTTTTATGAGTTTTGTTATATTATCTTTGGGAGTTTATGTTGAATGGTC AGGCATATAAAATATTGTGATTGTGTATTCTAATGATATAAACTGAGGAACTTATTCGTCCAGGATAGTGTTTATCTAAG ATGCAACCATGAAAATTTTAAAGGATAATTGTACCTCCCTCCCTACAATTTAAAAAATTCATGCTTTATGGTGAATATGG ATTCCTGGAAAAAGATAATATATACTTAAAAAAATATTGATATTACGCTATACATAGTAAGAGACTGAAAGTTCTCCTAT TTTGGTGCTTTCTAGTTTTTTTTTTTGCTTGAAACATAAAGAAGCCTAGATATATTTAAGGCAACAAATCAGAATGCAAG AAGGGTTTGTTATATTAGGCTGTAGCGGGTTTTGTGGGAAGTTGTCCGTTTCCTTGGGTTTGGTTATACTAGGGAGATAC ATCTTGAGGCTTCCGTGATTTCTGAGGGGTATACAACTCTTTGGGTTCTTAGTTATATAGGCTAACTAAGAGTGATAGAC CGAGGTTTGATAATAGTTCAAAAATCTTTCCTGGTCTTCAGTTTTAGCACAAATAATAGAAAACGAAAGGGTGGGGATTG AAATCATCTTTGGCTGATTGTGAAGCTTTGAATGATAGCTGTTAGGGAGATTCAGAATTGCTCTGGATTTCTCCAATGCT ATTCAGGTTTTAGAGTTGGTAAGAAGCCACTTTGGATATCAAAAGTATGTAGTATGGTTATCAGTTGTATTGTGATTCCC ATTGGGGTTTGTGCAAATAATTTTCAAATATTGTAGGAGAAAAAGTGTTTTTCTGAGAAAAGTTTCTTACACTCAGGAAT CAGGATGATTAATGATCATACCATTTTGATGTTTGCTATATTTTTGTTATTAAGACCAAAATGGCTTTAGGTGGACCTTA ACCACATCATTGAATAATATGGTCATGGTAGATGCAACTCCTTCCTCATTCTTTTTGTAAAGGATAATTTAACGGTGGAG GAAAAGATCTGTTATTGAATAATATGGTCATGGTAGATGCAACTCCTTCCTCATTCTTTTTGTAAAGGAATAATTTAACG GTGGAGGAAAAGATCTGTTATGTTTCATTTCATCTTGAGTTTAACTTTTTAAGCATCAATATGACGAGAGCACTTGATTC TATCAGATTGGATTCATAGTAGGACAGTTGGTTCTTGGTAGAGACTGGACAATGGTTAGCAGAAAGGTTTACAGAAGAAT GTAAGGCATTTATAGTCTGAATTTACTAGAAGAGTAGGTAGACTCAAATAATGAAGGAAATAAATGCAATTTAAAGAGTT GCCCATTTTACATTGTTCTGAAATTCAACTTCATTAGTCGAGAGCACTTGATTCTATCAGATTGGATTCATAGTAGGACA GTTGGTTCTTGGTAGAGACTGGACAATGGTTAGCAGAAAGGTTTACAGAAGAATGTAAGGCATTTATAGTCTGAATTTAC TAGAAGAGTAGGTAGACTCAAATAATGAAGGAAATAAATGCAATTTAAAGAGTTGCCCATTTTACATTGTTCTGAAATTC AACTTCATTATAAAGAGTGAATTAATGGAAACACCCTCTTTAGTCAAAGTGTTAACCATTTGATCATAGAAATTTGTACT AAAGGCTTAAGCTATTGGCTGGAGGCTAGCGTTTGAGAAGCTATATTTCTGTAATAGAAACTAATACCAAATGAATGATG TGAAATTGAGAGCCTCTGAAGGGAATGACATGCAATGGAACATAGGGCCTCTCACTACCATAAGCTTCTGAAATGATCAT AAGTGCTACCATAAAAATACTTATGATTGTCTTCCCCAAAGTTAATCCAGTAGATGAATCAGTAAGCTCAACTGTGTTAT CCATATCTGTATCAGTGTTGTCAAATATCCGACATGGCACCATCATGGAGGAATCTCATGGCGGGTTTCTGGCTTTCCGC CAAGGCCAATGTCCTGCCATAATCCACCATATTTCGCTATATTCCGCCATCTTCCATCATTATTTGTCAAATATGGCGGG TTGTTCATTCTCCGCCTTATTCTGCCATTGACAACATTGATCTGTATAGCCTTTTACCTGTTTTCTGCCTACAACAAAGC TCTGATTAACCAAATGATTGACTCCCTTTCAGCCCAAAGAAAATTCCGCGATAGGCTTGAAGTTTGTTCACTTGCTCAAC AGGAAGCCTATACAAAGGCAGAAGTAAAGGAGATGATTGATACACATTTTTGTATCAAACTGAAGTCAAATAAAAAAAAG GAAGGGGTATTCAAATTTTTTGTTCATGTCTTAGAAACCTTCCGGATCAGATTTAAAATTTTAATGAACATTCATTGCCT TTCTAACAGAATAAATATTGATTGAAAGATGAAAATGGTTAAGGGAACTTCCACTCTTTATCTACTGGCAGAATAAATAT TTTATAAGCAGTCTCATGATCTTTTTGTTTGTATAATGTCCTACTTTTAAGCTGACCACACTACCCATTCTTAATATTAT GAATCTTGGATTTGCTATCACATTGTAGGGGACGTGTAAAGTGGGATGAGGATAACATTGGAGAAATTGAGGCAAACAAA CCTGTGAGGCAGAAAATTACTGAGCCTAAGACTCCATATCATCCAATGATTGATGACGACAGTATGTAAAGAAGATAACT TAAATTCATGTTTCCATTAATTAAATATACATATATGGCTATAACTGTTTACACAAAACTTTCCTTTCATGACTAAATTC TAAAATATATAGGTCTTGACATGGTTTTGTTCCTAAATGTAAAAACAACATATTAGCCTAACTCTGTTGGTAGAATTGCA TTGGAGATGTGTATTTGAAGTTTTATTCTTAGGCCTACTTTTTTGCTAGGTTTAGAGAACATTGTATGTGAAGCGACTCT TATTCTGACATAACCTATTTTTTTAGATTCTGGATCCCCTGTGCGAGGAAGTTTTGATGCATGTATTGATGATGAAAATC AGACAAGGCATGCTGAAGCAATATGGACTGCTCTGAATGACGTAGCATCCAGTAGTAAAAAAGACACTGGACAATCTGGT GGTTGGACATCATCCGAGGATGAGCCAGATGCAATGGAACAAGATGATGATGGTATAATACTAATTATTTGATCTTCATC TGGTGTGTGTGACAAAGATCATTGTCGTTTAGTGTTTTTATCACGATGGTTACTCTTAATGCATGTTTGTGCTTCTTCAA GAGAATTTCAGTTTTAATGACTTATTTCTGATCCAAATAATTGAAATCTTTGAATAATTATAAATATTACCTTGGGATAA ATTGATTTTAACATGAATGAATTATAGTGTGGGAAAGTCAGGCTATAGTATATACTTCTGATCTGTCAGCAACATGTAAT GTGGGATTCCTGCATAGATACTTATAGAATCAAGAGTTCCGAAATAAGTATGAATAAATATGGCTCACCTTGCGCACGTT TTTAAGTTTGAAGTCTTTTAGTATCGGAAACAAGAATGGGAGTTGCTTGTTGCTGCTGTGAGATTTCCTAATATTTCTGA ACCAATAATTTTATGTACGTGAACATCATAGTTATATAAGATGGGTTAACTGTATTCTTCTATGGAAGACAGAAATTTTT GTATAGTAACAAGTATTTCACTATTTCAGTTTTTTATCTTATGCCTATCATAGTATCATTCACACTGTTCGATCTGTAAG GTTGATAAGTGCTTATTTTTGTGTGGGACTGGGAAAAATGTCAGACTTGGAGGCTGCTCCTATAATATCCAATCATTACA CTGTTTTGAATTTCAGTTAACTCTGATAATGAACTGGGATCTATTTTCAATTAGATAGGGGAAACAAGTTTTTGGAATAT TGTCTTTTCTTGCTCTCATGAAGGGAGGTTCTTTCATTTTGTGGAGCAAGAAACTTTTTTTCTTGCCATTTCATGACATG CCTGTTTACAGGGATATCATGATAGAGTCTAGATTAATTTATTGAATTTATTTGTTTATTGTATTGATAAATTACTTATT CTTCTACTTACCTAACTTGTATATTCCTGGGTTGGTATACTGTTAGATTCTGAATCAGATAGGAACTTAGCTTTCAAAGA GCACAGAAAGGCCCACTATGATGAATTTCTTAAAGTCAAAGAGCATCGACAAAAGGCTTCTCTTGAGGACGAAAGTGATG AGGATGGTGATGCTGAACCTAGTAAGGGGGAGAAGAAATGTGAATCATCTTCGCTGAGTGATAGTGTGAAAGAGATGGAC ATTGAGGGTAAAAAGTCTTCCGCGCCTCCAGCTAATGGTTCTTAGGCAGTGATCAACTAATAAAACCCACTTTCATTTCA TTACTCTTGTTTTGTGGTTTCGTAAAAACTAAATGATTCACTGGATTCTTGTATCATTTGTGTGTAAATAGATATGTTCG GTTCTTTTCTGCCATCTCTGATTATGTTAACTGACAAATTGGATTCTGCTTTGCATTATTGGGATTTTGCTGCTGGTTTT TATAAGTAATTAAGGTTGGATTGTTAAAGGTGAGTTATTCCAAACTGCATTTGTTTTCCATGTGTGGGATGTTTTTTCTT TTTCTGGTCGAATTTTGTGTGGGAGATTTATACCCGAATTTTCAGATTTATCAGATTCGAATCAATCAATGATGTTACCA GAGCTCACTTACAGCAGAGGGAAACAAGCTTTTTATTTTCTTCCGTTAATTAGGTTGTTCTAGTAAAAAAGTGCAGCATT ATTTACCTTTTTTTTGTTGCCAAAAAAGCATTATTTACCTTTGACTTGGAAGTTTGAATATTATTATTTATTTCCTTCTT TTGGTCCGTATGTCTAGATTTGTTTTTCTGTGGGTTATGTTATGCGTTTACGCTAGTGTGTGTGCCTGTGCGATGCATAC

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0145800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGGGACGTGTAAAGTGGGATGAGGATAACATTGGAGAAATTGAGGCAAACAAACCTGTGAGGCAGAAAATTACTGA GCCTAAGACTCCATATCATCCAATGATTGATGACGACAATTCTGGATCCCCTGTGCGAGGAAGTTTTGATGCATGTATTG ATGATGAAAATCAGACAAGGCATGCTGAAGCAATATGGACTGCTCTGAATGACGTAGCATCCAGTAGTAAAAAAGACACT GGACAATCTGGTGGTTGGACATCATCCGAGGATGAGCCAGATGCAATGGAACAAGATGATGATGATTCTGAATCAGATAG GAACTTAGCTTTCAAAGAGCACAGAAAGGCCCACTATGATGAATTTCTTAAAGTCAAAGAGCATCGACAAAAGGCTTCTC TTGAGGACGAAAGTGATGAGGATGGTGATGCTGAACCTAGTAAGGGGGAGAAGAAATGTGAATCATCTTCGCTGAGTGAT AGTGTGAAAGAGATGGACATTGAGGGTAAAAAGTCTTCCGCGCCTCCAGCTAATGGTTCTTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0145800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKGRVKWDEDNIGEIEANKPVRQKITEPKTPYHPMIDDDNSGSPVRGSFDACIDDENQTRHAEAIWTALNDVASSSKKDT GQSGGWTSSEDEPDAMEQDDDDSESDRNLAFKEHRKAHYDEFLKVKEHRQKASLEDESDEDGDAEPSKGEKKCESSSLSD SVKEMDIEGKKSSAPPANGS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	54	54	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	-	–
PANTHER	PTHR12398 View details on PTHR12398 Search for proteins/transripts with this domain View external data on PTHR12398	2	154	153	9.0E-36	IPR007062 Show description in modal box View details on IPR007062 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04979 View details on PF04979 Search for proteins/transripts with this domain View external data on PF04979	5	140	136	2.6E-27	IPR007062 Show description in modal box View details on IPR007062 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	68	180	113	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	69	89	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	105	136	32	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	144	170	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004864 View details of GO:0004864 AmiGO InterPro QuickGO	Molecular function	Protein phosphatase inhibitor activity	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.	Subterm of View details of GO:0019212 View details of GO:0019888
GO:0009966 View details of GO:0009966 AmiGO InterPro QuickGO	Biological process	Regulation of signal transduction	Any process that modulates the frequency, rate or extent of signal transduction.	Subterm of View details of GO:0010646 View details of GO:0023051 View details of GO:0048583 Regulates View details of GO:0007165
GO:0043666 View details of GO:0043666 AmiGO InterPro QuickGO	Biological process	Regulation of phosphoprotein phosphatase activity	Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein.	Subterm of View details of GO:0010921 View details of GO:0035304

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0145800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0145800.1