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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0145900 |
| Transcript ID | LotjaGi2g1v0145900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cold regulated protein 27; TAIR: AT3G10845.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q2HEW5|CHG2_CHAGB PKS-NRPS hybrid synthetase CHGG_01239; TrEMBL-Plants: tr|K7MIJ7|K7MIJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52597489..52604289) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTATTCGTTTAATAAAAAAACTTGAAGTATAATATTTAATAAAAAATATTGCATCCAAATCAATTTCATTCGTTTGA CTAGGATCGGATCACGATGAACATCTGTTTATTTGCATAATTTTTATATAGCTTCCAATTTTATACTGTCTAAATTAAAT AAATATTTATGCAAATATCAATGAGAATTGAGAAATATCAAAGCTTATAAGAAAATGATAAATATCAACAAAAAAAAACG TGGGTCTGAGTCTGATATTTATACAGAGCAAAACATGTGTCGTGTTAATAAAGCGAGTACCATACTCTTCTTTCGTTTAG TTCCTCTCGCCAACGCTTCTCTCTCTCGTTCGTTCGATCCACGATGGAATCTCCGGTGCACGTGCCGGCGAGCGAGACGG CGTCGTTTAGGACAGACGAGAAGCACGTGCACTTCCTCAACACCATGGAAGCCTCCTTCGTCCGCACAATGCTCGACAAC AAGAACAACCACCGCCGCCACCACCACCGCTTCCTCCGCCTCGATCGCCACCTCCCCGACACCTCAGAATCTACCTTAGA TATGAAACACTGCCGCACCGGAAAACACCATGCTCCCTCCTCAGGTACATGATCGCATCTTATCTCATCTTCCTCAAAGT GTGGAAGTTGGTAAGACAGCGTTTGGATGCACGTTAAAAACGCGTTTAACTTCAGGAAGCGGTGCTTGGTGGTTTTGTTT TTTTTATTGAAACCAAACAGCACGTTACGTGGAAGACACAGAGTATGCCAATTAGATATTTGTAGATAATAATAATATTA TAATCATGAATTATTTCTTCTTTTCTTTTGGGTCAGACTGCCTTATCTTTTCAATTTTTTAAATTTTATGTCAAAGATAT TAATTATACCCTTATCACGAAGTTTTCAGTACATTTCAAAATTTAAAACTCAATTATTTTAAACGCTACTCCACACAAAC ATTTTATCAAATTTTCTTTAAGTTTGATTAAGTGTTTGTTTAGGGTTGAAAATAAAATTATATTTTTTTATTAGATGGAA ATCAATTGAGTATTTATGTAAATAAAGGGTACATGTGTACATACATACCTTTAATTTATAATATACTAGGTAGAGATAGA TGAATTAATTGACTTTTAATTAAGGTTAATTTTAAATGAAAAAAATAAATTTTGAAATGTACTGAAAACTTTCAGAAATT TTACTAATTAATTTTACTGTTGGTAAGTGGACTGTGTCAGAAAGAGGGTGAGTTTTATAGAAAAAGAAAAACACTTTTTA GTTTTTAATGTGGTTTCTCGTCTGACACTTTTTTGACCAGTTTGTGCTTTATTTTTTCTCTCGTTTTAATTTTGGGTTAA TGCACGACTGCACGTGGCAGATTCAGTGGGTCAAACAACCAAAAGAACGAAGAGGAGATCATCTCAGCCGTGCGATTCAT CACAGGATCAGGTGTGTACTTGACTACTTGTGTGTGTCTCGCCTGTGTTTTTGTATGTGAAGATTGAAAATCCTTATGTT GTATCAACCGTCTGATCATGATCCAAAGGCCGGCATTTTTATTAAGATGAGAAGGACATATTTTTATTAAGATGATAGAA AACAAACTTTTTTTAATTATTAATAAAAACAATATATTATGTAAACAGATTGTGTTTACAAACTTGAACCCAGCATTTTT ACTTAGTCAGACATTTTTTATAGCTTGACCTATTAGGTCAAAAAACATAAGTCTGACATTTTCAATAAACAAGTTAGGTT GGCCCATCGACGAGTTAGAGCGCGAGCCTCTGACGAGCAGTCTGACCTACTTCACTCCTATTTGTTCGATCTTTGCTTAT AAATACATTTATTTATCACATTATTATTAATTGAGATCCAAATCTTAACATGAGAATGATATTTTGGTGCTTTCCATGTG TCCCCAAAACAGGTAGTCCCACAAGTAGAAAATGAAGAAAGGAAAGGTGCGGCTTGTTATGGCGACAATGACAAAGGAGC AGAGAATTAATGTCCACCCACCATCGATGAAAGATCCCAAGTTTTTTTTTTCTTCCCTTTTTTGAATTTGTTCCTATTTT TCGTTTGTAGTTTTATTTTATCCATTCTTTTACCTTAACATTTAATTTCTAAAGTGTCTCTGGTAATATTTTGTTTTCTG CTCAATTTTCGTTTAATTTTTCTTTCCTTTTGGACGCAAGTTGTGTTATTTGCATGGGTTTCATTTAGTAGAAAAGAAAC TTGTATTAATGAGCAAATTACTATACCAATTGGTGGCACCAACGCAAAGCAACAAAGACAATAACGAGTGTGAAAGATGA AAATAAGATTGTTATCGGGGTAGATGGTGGTTAACTAATTTAGTACTCTATCTTCCTTAAAAGAACTAAATTGGAGGTGC ATGCACATTGAATATTTTAATTAGAGTTGAATTGGAGGTACGTACACATTAATTATCTTTTACAAAAAAACCTTTCGCTT TTTTCCACTCTCTTAAATATCAACGATAAATAAAAACTAAGAAAAGTGAGTTATGTGTAATTTTGAAAAGCTAATATAAA TTAAATGAGAATAATTTCTTAAATACAATTAACTAAATTTTTAAAAGGGGCGTGAAGAGTTTGTTTGAAGTCCAATTCTC TAAAGGGAGTCCGATCACCACATTATTGATTAATTTTTTTTAATTAAGTAATCGTTATTATATATGATGACTTATTTTAT TTTCCAATACCTAGGGTGTGCTTGATGCACTCCTACCAGCACCAACTACCACAATCTAAGTTGTGCTCAATATTTTTTTC ATTTCTTTGCGTCTGCGTTACTTACTTTTCCGATTTTCCCAATTTTGAAGGTAAGTTTCATGGACAAAGTAGGGAGGGGA TGGGAGATATTTTATGGAAGTTCTAGGTATGATCAAGTAAACATTAATTTGTTAGTAGCAGGGTGTGGAATATAATACTA GAATAATAAATGAAGTTATAGCTTCGGTAGCAAGGTGTCATATCGTGATATTTTCAAAGCTGCGCTGCACACATGCATGA CATCTGCATATAATTAATAGATATTAGGCTCGTGAATACAATGGTGATAGATTGGAGCTTAGAGACTGGGATGGGAGATG AGTTTTCATTTTTCAACCTTATCTGCACGAATATGCATGATGATGGTGTTTTCATTTGCATACTCTTTTCTACTTTTAGA AAAGTTCCATCGCTTTGCCAACTTTGTATGTCGCCATAGCTAGTGATGTGAATCAGTGAGTCTCAGTTTAGATGAGCCTT TATTGCCTGTATTTAAAGCAAATCTTTATTATCTTTGACACTTACGGTGAAAAGTTAGCTGATATATAAACAAAGTAATA GTAAAATTTTAATAAAATGATAAGGATAAAAATAAGAATAAATTTAATAAGTTTTACCTATCTTAAGTAGCTTATTAAAA TAGCTCTAAGTTACTTAAGTAAATTCATTTAACAAACACTTGTAATGAACTTTTAAATTAGTCAAATTAGTTTTAAACTA GTCAAATAAGGTTTGAACTAACTAAAATGACATGACATGCCAAACATAGCATAGCTTTTGTTAAAGGATCAAGACATTGC CTTGTGAAAATTATCCTTGTGGAGGGATCTTTTAGAAAAATCTCTAAAAAATTTGAAAAGGAAGATTACATGAGGACTTG TGGGGGATTGTTGGAAAAATTTATAGTTAGTTCATTTAAAATCCTATTTTATGTTAGTGACATTTTATTTTTTAAAAACT ATTATATCTTTCAGATATGATTTTGACTTCAAAGTCTTTATCCTACTTTTAGGGATTTGTTTCTTAATTCAGTTTTGTTT ATAGCTGTTAGAAAATATCTCCACCCCCATTGCACGTTCTTAATTTTTTCTCAGTTGCCTATTCCTCTGGCATTACGTTG GCACAAAAGCTTTACAAAAGGAGTCTTGAAACGACTTTCACAACACAGAAAAACAGAACACACTATTGTCTTCTTCTTAT TCTAATTTTCACTGGTTTTTCCATTAATCAATATTCAATGAGCACAGTTTGTGCATCAATTAAGGGATCTTTCGCTGCAC ATCAAGTTCTTATTCTATCCAGTTTAGTTGAGGCGTTTTCTCTCTAAGAACAGCGCCTAGCGTGCTTCAATCCAGGCTAC TCTGAACTCGTTCTCTTGTTATTTTAATTGTAAACATGTTTCATTGTTATATTGCATTGTTTGCTCTCTATCTTGTTGCT GGTTATTCACGTGTTTAATTTGTGTTTGTGTTTTAACTAGTCTAAATCTTCTATCAATTTCCAATGGCGATTGTCGACGT GAACGACATCATTCACCCTTGCTTCCCCATGAGGATAGGGTAACTGTTTAACCGAACAAACTATATTTTTTGGATTCTGA AATTGAAAATTTTGAATGAGTTTTGTTGTTGTTTGATTGCAGCCATCTCCGACCTCTTTCGATGAGGTGTTTGAGTGCGT GTTCGATTACATTGACAGGCTATTTGTCATAGTTCCGCCTCGGAAGCTGCTTTACATGGCTATTGGTTTGTGTTTCGGTT GACAAATTAATCACGTGCCCTCGAATGATGCTTAGAGAAGTTTGGTTTTTTAATTTGAATAAGTCAAATAAGATATGCCA CTAAGTTGTTAGTGGAGATATTAGTATCTTTTATGTTTTTATATTCAGTTCCTAGACTTATGCTAGAGTTTAGGTTCACT AGTTATCTTTCTGATGTATTTAAATTCAGGTTTTTGTTCAATAAAAGATATTAAGCTTCAGTTTCCTTAATTTTGATTGT GTGAATTTGCTTGCTCTGTGTGTGTTGTTATCGGTGATGGTTAGTTGTTAATTTTTTTGGCGGTTTGAATTTGTAGACGG TGTTGCGCCCAGGGCTAAGATGAATCAGCAACGTTCTAGGCGGTTTAGGTAAGCCAAAGACGCATCTGATGCGGTATGTT TATGCTCAGTGTTTACATTCGTTAATTTTTGGTGTGGTTTGAACTGTTTTGGATACACTCATTGGGGTGAATTATCTGTA ATTCAGATTATTACAATTTGTTAAGCAGCTTTGTGATAAAATGCCTAACCCAATGAGAGCATCATCTGTTGATTTTGTTA AGTCTTTGATTTTGTCATTTGAGTACTCAATTAATCAAATCCTACTTCGCCTATTGATTCCAACCCTTGTCATGATATTG CAGCTTTGTGAAAATGCCTAACCCAATGGCCAATGGGAGCATCATCTGTTGACTGTGCAAAGATCTCTTCAATGTCTATT GTTTCCTTTACTATTGGTGGAAAGGTTTTTGACCTTGCTCTACATGAGGTATAATTTCAAACCAGAGTAGTTGCTTTTGA CAGCTGATCATCAAATTGTTGAAAGACAAATTCTTTTAAAAAAAGAGCAAACAAAGACAAATTATTTTTAAAAAAGAGCA AACAAAAACCGACTATTCAGCATGTTTGGATTAGCTTACTTTTTTTCAGAATCAGTTTTGGTACCTAGAAATTACTAACA GACCTCTCTCCATAATTGATTTTGGCTTTATCCATGAATGGTTTCCCTGTTCCTCACTGATCCAATTTTCTTCTTGGTTT CTTTAGTACATATTGAAGGTGGGTGAAGGTTCTGCAGCCCAATGCACTAGTGGCTTTACCGCTTTGGATGTTCCTCCTCC ACGCGGTCCACTCTGGTACATTAAACTTGAATTTGCTTTAGACATGCTTTGTTTTGATGCATTTGATTTGATTATCATCA CTTAATGGCATCTGCATAAATGCAGGATTCTTGGAGATGTCTTCATGGGGCGCTATCACACTGTCTTTGATTTTGGTAAT TAGAGAGTCGGATTTGCTCAAGCAGTATAGACAGTATTGCCTTCTCACAGAATGGTACTAGTACGTCCTATTAAATAGCT TAAGTTATGTTATGCATGCTTAGTTGAAAGGTGTAAGATATGGCTCTCGTGATTCCTTATAATCTTCATTTTCTTCATGT TTTGCAAGATTAATGTGTGATATTTTAATGTACCAAACATTAAAACTCATGTAGAAAATAAACAAGAAAATTATGCATAT AAAAAGAAAAGCAAACTAGGTAGCTAATGTGAGATTAGAATTCAGGTTACAAAATAGGAACAATTTCAGCGTTTGCAACT CATTGGAAACATGGTAGTTTTACACGCTACAAGCTGTAGCTTTTTCTTAATATTTTAATAAATTTATTGCATCATTCATA TTTACATACTTTAACTTATATATTGTAAAGAAATAGTTTTCTAAACAAAAAGATCATCTAAGTTCATTGAGTCCAACTCA ATTCAATCCTAGAAGCACCTTACAATTTTTTTTGGTCAATTGTTTCATAATTCAAAGAAGAACAGAGTGAAGTCCTGTAA GATACAGCCTAGTTTGATGTTATCTTAGCTTATTTACTGTATTATCCCATTTTTCACCTTATGTGTCTTCCCTCTTGCTG GCAGGACTTCCATTTTTATCTGTTAATTGGAAATAAAGTTGAAACTGCTTTCAAGCCAACCACCACCATGGGTGGTGGCG CAGCCACTATGGTGGATGTAAATTCAAGGTTCTAAATATCGGTCGCGGTCGCGGTCGCGTTGCGGATTTCGCGATAACGG ATATTACAGTTGCTGCGGTATGTGTTGCGCCTGTTGCGGTGTGAATGGTTCCCAGATTTTCAGAAATTATGCGTAAAATG CATAAAATATGTGAAAATATATATATTATCATATAACCTATATTATAGATCATAATAGTAACTTCTAAACTATACAAAAA C
CDS sequence (LotjaGi2g1v0145900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTCCGGTGCACGTGCCGGCGAGCGAGACGGCGTCGTTTAGGACAGACGAGAAGCACGTGCACTTCCTCAACAC CATGGAAGCCTCCTTCGTCCGCACAATGCTCGACAACAAGAACAACCACCGCCGCCACCACCACCGCTTCCTCCGCCTCG ATCGCCACCTCCCCGACACCTCAGAATCTACCTTAGATATGAAACACTGCCGCACCGGAAAACACCATGCTCCCTCCTCA GATTCAGTGGGTCAAACAACCAAAAGAACGAAGAGGAGATCATCTCAGCCGTGCGATTCATCACAGGATCAGGTAGTCCC ACAAGTAGAAAATGAAGAAAGGAAAGGTGCGGCTTGTTATGGCGACAATGACAAAGGAGCAGAGAATTAA
Protein sequence (LotjaGi2g1v0145900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPVHVPASETASFRTDEKHVHFLNTMEASFVRTMLDNKNNHRRHHHRFLRLDRHLPDTSESTLDMKHCRTGKHHAPSS DSVGQTTKRTKRRSSQPCDSSQDQVVPQVENEERKGAACYGDNDKGAEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 119 | 111 | 2.3E-38 | – | |
| PANTHER | 9 | 119 | 111 | 2.3E-38 | – | |
| MobiDBLite | 56 | 76 | 21 | - | – | |
| MobiDBLite | 56 | 129 | 74 | - | – | |
| MobiDBLite | 115 | 129 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0145900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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