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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0146600 |
| Transcript ID | LotjaGi2g1v0146600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT4G33495.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|K7MIK6|K7MIK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0146600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52735000..52737502) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTTATCATAATTGCAATATGCCCCCTTTATCTTCTGCATATTTCCCCAACTCTTCTTCATAGCCAAACCAGCATAA CCCTCTCCAAAACCCTAAAAATGCGATTTTTCGGTTCTATCAGTACCAATTTCTTCAAGCGCAAGCTCGAAAATTTCCCA CTGATTCACCATTTCATCAACCACAACCCCAGTTTCAATCTCAAATTCGTCAGAGAAAAGTCACAATCCACCGCAATCCC CAAGAAGCAACTGAGAATTCGCGACCATGGCTACGACAACTACATGGAGGTCGAGAAGAAAACCCGCAAGGTCCTCAAAT TCCAGAACCTCATCCTCAACGAGCCCAGCCAATCGGTCCCTATCCCCCGCCTCGAAACCCTCGCGCGCCGCATCGGCTTC ACGCGCCACGAGGCCGGCGCGTTCATTCTTAAGTTCCCGCATGTCTTTGAAATCTTCGAGCACCCTGTCCAGCGCATCCT CTTCTGCCGCCTCACGCGCAAGGCGGTCCTCCAGATTGATCGGGAGCGTCACGCGCTTGCGGGGTATCTCCCACGCGCCG TCACGAGCCTCCGGAAGCTAGTTATGATGGCCAATGGTCACCGCCTTCGCCTTGAGCATGTGAGGATCGCACGCGCCGTG TTGGGCCTGCCTGATGATTTCGAGCAATCGGTTGTTTTGAGGTACCCTGAATTTTTTCGGTTGGTTGATGCTGATGAAAC TAGGAATAAGTACATTGAGCTTGTGGAGTTTGACCCTAGGTTAGCAACTTGTGCAATTGAGGAGGTTAGGGAGAGGGTGT ATAGAGAGAGGGGTGGTGATGCTGAAGATATTAGGTTTTCTTTTTGGATCAATTTCCCACCTGGTTTTAAGATTGGCAAG TATTTCAAGATTGCAATGTGGAAGTGGCAGAGGGTTCCTTATTGGTCCCCTTATGAAGATGTTTCTGGGTATGATTTGAG GTCCATTGAGGCTCAGAAGAGAATGGAGAAGAGGGCTGTTGCCACTATCCATGAAATATTGTCATTGACTGTGGAGAAGA AGATAACTTTGGAAAGGATCGCGCACTTTCGGATGGCCATGAACCTGCCCAAGAAGTTGAAGGAGTTCCTGCTCCAGCAT CAGGGTATTTTTTATGTCTCCACCAGGGGGAATCAGGGTAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATCGGAGAGG CGAGCTGATTGAGCCCAATGACTTGTATTTGGCACGGCGGGTGCTGGCTGAGCTGGTGTTGTTGAGCCCCCGGAAAGCTA AGGTTGATAGGGAGTTGGTTGGGTACAGGCGGCGTGGGTTAGATGATGAAATGGGGCAAGTAACAAGAGCATACGTGGAG GATGCTTGTGAAGACTTTAAGGGTGGAGATGATGTTGGGGAAGACAAGGATGCAGAGGATGATTTTACATCAGATGTAGG TTCTGATGTTGATTCTGGAGATTAGGGTGATGATTTTGATGATATTATCAATCAGAGGCCATCTTGAGTGAGTATTAGGG GAATCCTTCTGATCTAAGTTTATGTCCAATTTTGCTGTTGAGAAGCCTCTCTTGATATAATTTTGAAATTTTGGAAGCAA TGGATGTGATGGGGTAAAGATTAGGATGGAGAGGATGGTTTGAATCAAGGTACTGATGTTGATTCTGGACATGAGGATGA TGATTTTGACTATAGTGTATCAATGCAGAGGACATCTTGAGTGAGTATTGGGAGAATCTTTTCTATCTAGGTTTTAGTCC AATTTTGCCGCTGTGAAATTCTTTGATATAGTTTTGAAATTTTGGAAGCAGTTGATATGGTGGAGTTAAGGTTCCTGTTT TTATGCATCTTAACTGAAATGACTATGGTGAATTGGTGAGACTTACAGGGTTTTATGATGAAAATGTTGGGTCTCCTTTC ATGGAGTAAGTGTGCTTTTCTGGAAGATTTTGTTAAGGACAATATGTGAACTCAGATTTTCTACCTAGAATAGATATGTT GTGTTGCTTCATTCAGAATGAAAATAATGCCTTGAAGTGAAGGTATCAACCCAGTCATGGACTCGTTTGTCACCCTCATT TACCTGCACATACAAAATCCGGCTTCATAAAAGTAATGACTGGGGAAACAAAGAAGCATGGAGCCTGGTGTTGTTGGACC AAGTTGATCATCTTTTATCTTTTAGGATGAAAGTGACAATTGTCATATTTCAGAAACTAAAGGGGACCTACCTTGGATCT TTTAGGCTTATAATTATTATTTACTCGTTTTTAATTTGTATAGCTAACATTACTCGATTCAAAGAAAGGTTTATGTGGAA ACAAATAAAATGGAATTTTTGGGACAGCAAAAAGTAAGGTTTAGTTACCCCTTAATCATTTATTTGTTGTTTTAGAAAGA AAAAAAAAAGTTTTGTTGGGTGTTTATAAAATGTTCAGATGCTAAGTGTCAATGCAATTAGAATGTCAAAACACATATAT TTAGAAAAAGTATGTTTGGGTAT
CDS sequence (LotjaGi2g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATTTTTCGGTTCTATCAGTACCAATTTCTTCAAGCGCAAGCTCGAAAATTTCCCACTGATTCACCATTTCATCAA CCACAACCCCAGTTTCAATCTCAAATTCGTCAGAGAAAAGTCACAATCCACCGCAATCCCCAAGAAGCAACTGAGAATTC GCGACCATGGCTACGACAACTACATGGAGGTCGAGAAGAAAACCCGCAAGGTCCTCAAATTCCAGAACCTCATCCTCAAC GAGCCCAGCCAATCGGTCCCTATCCCCCGCCTCGAAACCCTCGCGCGCCGCATCGGCTTCACGCGCCACGAGGCCGGCGC GTTCATTCTTAAGTTCCCGCATGTCTTTGAAATCTTCGAGCACCCTGTCCAGCGCATCCTCTTCTGCCGCCTCACGCGCA AGGCGGTCCTCCAGATTGATCGGGAGCGTCACGCGCTTGCGGGGTATCTCCCACGCGCCGTCACGAGCCTCCGGAAGCTA GTTATGATGGCCAATGGTCACCGCCTTCGCCTTGAGCATGTGAGGATCGCACGCGCCGTGTTGGGCCTGCCTGATGATTT CGAGCAATCGGTTGTTTTGAGGTACCCTGAATTTTTTCGGTTGGTTGATGCTGATGAAACTAGGAATAAGTACATTGAGC TTGTGGAGTTTGACCCTAGGTTAGCAACTTGTGCAATTGAGGAGGTTAGGGAGAGGGTGTATAGAGAGAGGGGTGGTGAT GCTGAAGATATTAGGTTTTCTTTTTGGATCAATTTCCCACCTGGTTTTAAGATTGGCAAGTATTTCAAGATTGCAATGTG GAAGTGGCAGAGGGTTCCTTATTGGTCCCCTTATGAAGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCTCAGAAGA GAATGGAGAAGAGGGCTGTTGCCACTATCCATGAAATATTGTCATTGACTGTGGAGAAGAAGATAACTTTGGAAAGGATC GCGCACTTTCGGATGGCCATGAACCTGCCCAAGAAGTTGAAGGAGTTCCTGCTCCAGCATCAGGGTATTTTTTATGTCTC CACCAGGGGGAATCAGGGTAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATCGGAGAGGCGAGCTGATTGAGCCCAATG ACTTGTATTTGGCACGGCGGGTGCTGGCTGAGCTGGTGTTGTTGAGCCCCCGGAAAGCTAAGGTTGATAGGGAGTTGGTT GGGTACAGGCGGCGTGGGTTAGATGATGAAATGGGGCAAGTAACAAGAGCATACGTGGAGGATGCTTGTGAAGACTTTAA GGGTGGAGATGATGTTGGGGAAGACAAGGATGCAGAGGATGATTTTACATCAGATGTAGGTTCTGATGTTGATTCTGGAG ATTAG
Protein sequence (LotjaGi2g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFFGSISTNFFKRKLENFPLIHHFINHNPSFNLKFVREKSQSTAIPKKQLRIRDHGYDNYMEVEKKTRKVLKFQNLILN EPSQSVPIPRLETLARRIGFTRHEAGAFILKFPHVFEIFEHPVQRILFCRLTRKAVLQIDRERHALAGYLPRAVTSLRKL VMMANGHRLRLEHVRIARAVLGLPDDFEQSVVLRYPEFFRLVDADETRNKYIELVEFDPRLATCAIEEVRERVYRERGGD AEDIRFSFWINFPPGFKIGKYFKIAMWKWQRVPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHEILSLTVEKKITLERI AHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNQGKLHTVFLREAYRRGELIEPNDLYLARRVLAELVLLSPRKAKVDRELV GYRRRGLDDEMGQVTRAYVEDACEDFKGGDDVGEDKDAEDDFTSDVGSDVDSGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 451 | 421 | 3.0E-222 | – | |
| PANTHER | 31 | 451 | 421 | 3.0E-222 | ||
| Pfam | 54 | 389 | 336 | 2.8E-108 | ||
| MobiDBLite | 426 | 454 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0146600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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