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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0149000 |
| Transcript ID | LotjaGi2g1v0149000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional corepressor SEUSS; TAIR: AT5G62090.1 SEUSS-like 2; Swiss-Prot: sp|Q94BP0|SLK2_ARATH Probable transcriptional regulator SLK2; TrEMBL-Plants: tr|I1MQ14|I1MQ14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0149000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:53532815..53539628) extracted from Lotus japonicus Gifu genome v1.2.
ACTGGCCTCTCTTCACTCTTTCACTGTTTCTTTTATTATTTTCAGCGGTTTCAATTTTCCAGTTCCCTCGTTACTCTTCC AAAAAGCGACGTTTCGCTTCTTCCACCTCGCGATTTCGATGTGAGTAGCTTCCCAAACTGTCTTGTTCTCAATCTCTGAG CATGTGAAACTGAAACTTTCTACTTTTTCTTTTGAAAAGAATCCCAGTTTGTTATTATTATGATTTTTAGTTTTTCAATT TCTTGTAGAGTTGCGTTTTGAGTTCAAACTTTGCGTTTTGAGTTGATTGGGTATGCGAATTAGGGTTTTCTTGTATTTGG GGGTTCTGAATTTTCATGCGCGCTGGAAATTGAATTGGGGTTTGATTTGATTTTTATCTTCTCAGTTTGCTTGCTCGCTT ATACAATTTGATTTTGGGTTTTAGGGTTTGAATGTGTGAATTGAGGGTTTTGGGGTTCACCTGTTAATGCTTTTTGTTCT TGGAGATCTTTGTCTTAATGTTAATAAGAATTAGGGTTTTGTGCAAAATAATCTTGTATTGTGATTTTCAAATCTTTAAA GGGTCATTAATTATAGTTATTTTTGATGAAATTGTATATATGCTTCTTAACCAGGTTTGTTTTCTTATGTGGTCTAATTG GTTTTAGCTGAATATGTTCTTGTGCTAATGAATATGTATGTTTTGTCTTGCTAGATCCGTATCATCAATTGTCCAAAGCT GAGAAGAAAATAATAATTTTCGGTGCATATAGTTGCATGGGAGTTTGTAAGTTTAAAGCTTATATTAATAGAGTGAAGTT TGGAAATTTAAGTGGAAGAGGGAGACAATCCGGGGTTGACAATGTGCCTGCTACATTAAACCTTTGTACCGCTTGAAAAT ATTTTAAATACTATTTAGACCTGGCTCTGGAGAGTTACATAGATTCCAGTCACCAGGGAGGCATGCTCCCCATGGCACCT TCTCGGGTGGCTGGGGGGTTAACCCAATCATCGTCAAGATCTGGAATTTTCTTTCAAGGAGACGGGCAGTCACAGAATGT AGTTAACTCTCACTTAAGCTCGCCTTTTGTTAACTCATCTAACATAGTTCCTGGAAATGGGCGTTCGAACCTGGGTCTGG TTTCTAGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCGGCACCAAGTGTTGGAGCCAATTCTATGGTCACA GATGGAAATTCCGCACTCTCTGGTGGCCCCCACATGCAGAGAAGTGCAAGCTTTAACACAGACTCATACATGAGATTACC TGTCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCTGGGTCACCAGTGATGGATGGTTCCTCTGTAGTACAGC AGAATAATTCTCATCAAGATCAGATTGCTCAACAATTGCAGCAGAATCAGCAGCTGCAGCAGAGTGCTCCTGGTGCTACT TCTCTGCCTGCTTCTCAAACTGGCCCTTCTGCGCCACAAATGGGAGCACAAGTAGTAGGATCTATGGTTCAAGATCCAAA TACTGTATCCCACCCACTAAAGAAACCTAGGCTTGACATCATCCAGGGTGATTTAATGCACAATCAGGCATTACAGCAGC TTCTTCAAAGACAAGAGACCATACAATTCCAAGGTCGTAATCCTCAGTTCCAGCAGGCTCTTTTTCTGCAGCAGCAGCAA AGGGTGAGGCAACAACAAATTCTACAGCACCACTTGCAGCAGGCACACTTGCAGCAACAACAACAACAACCAATGCAATT AAGGCAGCAGTTACAACAACAAATGATGCAGCCTGTGTCTTCCGTGAAGCGTCCATACGACAGTGGTGTTAATGGTGTAT GTGCCCGTCGATTGATGCAGTACCTTTATCATCAAAGGGAACGACGAAATGTGAGTCTGTTTATTTTTGCTGCAATTGAT CATTTGTCTTTATGAATCTTAGTCCTTAGAGCAGCTGCAGCAGTAATTTATGATTTGTTTTGATTTGTGTGATGTATTAA ATCTCTTTGATATGCACTATCATCTATTTGCTTATGGTTTTTGTTTCAAGCATTAGTCATTCTATATCGGGCACTAAAAA TGTGTTTTTTTATCTGAGCACATTTATTTAGGCATTAGTCATTCTACTTTTTGAAGTTCATGACTAGTTACACCTATTAT TCAATATATCTGTTTGTTTCAGGACAACAGTATTGCCTATTGGAGAAAATTTGTGGTTGAATATTACTCTCCTCGTGCAA AGCAACGGTGGTGCTTATCATTATATAATAACGTTGCGAACCACGCATTGGGTGTTTTCCCCCAAGTGTCTATGGTAAGT TTTTTCACTTTTTATTTATGCCTCTACTTGTTCCATGACTAGGATAATGCCTTAACATTTGCCAATGATGAATTTTGAAT CAAAGTTTTACTAATAGACTGCATTACTTAGTTAGGGTATCATGTAATTTGCTGCAACTTCTTAGAATGTCTCTATACAA GAGTAATGTCTAAGATAACTGCATTTGCTTAGTTTAGGATTTTATGTCCACACCATTTGCACTTTTTCATATGTTGGATT TTTTTGGCCCTTGATGTGTGGATCATCTGACATGGATGTTTCGTTGTTTAGGATGCATGGCAGTGCGACATATGTGGTTC TAAATCTGGAAAGGGATTTGGTAAGGAAATGAAAATATTATGTTGCTATTCTCTCGTACTGTGATTGTGGATTTGGTTTT CATTGTAGAATCCCAATTTGTATTTTGTTGAACTTTCTGGCTTACAAGTACCCGGTGCTATCATTGCTGACCTGTGATCC TATTGTGAATTGTACAAAGTAATCTGCTGTTTAAACTTGGAAGTCAAAGAAAACTACCTCTACGAATTCTGATTGCTAAT AATATAATATAAAATTGAGTAATTGTAAGTGGGTAATGGTGGAAGATACATGATTTGCACTTCAAATTTACTTGTCAGCT TAGTTGTTAACATGTTCTCTCTTTAAATTTTCTGAGAATTTTAATCTAATAATATATTCATTCTGATTGTGGTCAACAGA GGCAACTTTTGATGTACTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTCTGTTTTTGGACT TGCCACATGAGTCAAAACTTCCTTCCGGTGCAATGGTGTTAGAATATCAAAAGGCAGTTCAAGAGTGTGTGTATGAGCAG CTTCGTGTTGTTCGTGAGGGTAAACTTCGTATCATATTCACTCAAGACCTGAAGGTCAAAATATCTCCACTGCATTTTAA TATATTTCTATTTGAATCATTTGTGCATACTGAGTAATGACTGACTGAAATTTTTTTAATGTGCATAGATATTTTCTTGG GAGTTCTGTGCAAGGCGTCATGAAGAACTTCTTCCTCGAAAGTTTGTTGCACCACAGGTATGTTCTGCATGCCTTGTTCG ACTTTTCTAGCTCAATTTATTTGGGATTTGTGATGGTAGGCGTTAACAGAAGAATATTACTTTAAAGTAGATCTCCGTTT GTGGCTAGGTTTTAGTTGATGGTTGGAGGACTGATTGGGAGTTGTAAATATATATATTGAACTCAATGCATGCAAAACAT GCGGTAAAGTACTAACATGTTCAAGACTATGAGTGATAATTATAGTAATAAGTTGATAACACACTCTGAAGATTGAATTT TACAAACAGAACAGACATTGCAGCCCTAAAAGCTAAGTTCATAATAGAACAGTGATAAGCTGCCGTAGGTTCACAATTCA TAAGAGAAATGACAATCAGCCCTAGACTGTATCCCTGGAACCGTAATCAAATTCACTTCCACAGCTGATCACTTTCTTCG TATCCTCTACCATTAGTTTTACATTTTTGTTACAAAATTCTGGGACACATAAAAACTAAGCTTCCTTGGTTTTTCTTACC ATCTTATCCCTGTTATTATTAGATGGGTAGGCCTTTGGGGCTTTTACAATGGTCAATAATTTACATTAATTCTGGAAATG TCACAGAGCATTAAAGTGCAATACAACTGAACCCGAAAAAATTATAGGGCGCCAGAGCCGTGCCCTCTAAATGATGGAAC CTCAACTGAAACACATTGAGCCACTGAGCACTTCTGCTTTCTTGGCTTGTCTCTGCACTGCAAACCATATTGATAGAGAT AGTGCAACTCCATAATTATGTTTTCTTAATCGGTACATATGATAGTATAGAGGTACTATTTTGGCAGCTACCTCTTATAT TGTACACTTTTACAGGTCAACCAATTAGTTCAAGTGGCTCAAAAATGCCAAAGTACAATTGCTCAAAGTGGGTCAGATGG GGTTTCTCAGGAAGACTTGAAAACAAACAGCAACATGTAAGTTAATACACTGTTTTTCTTCTCTGATTGACATATTTAGT AAATTCTCCTTCTAAGATACTATATTTCTGTTTGGTTGCATGGTTTATGTTTTGATGATGTTATGATCTCTAAATTGTTC TTTCAGTATTTTCGCAAGTAGTTGGAGAATCAACTGCAGAAGGATAATATGAAATTTATGTTGTTTCTCCATTTTGATTG TATTCTGTATTTTTTTGGGGGGAGGGGGTTGGGGGATTTGAAGCATGCAGGTTTTGTGAACATTGCTCATGTTTAGTTTT GCCTACTTTTTTCATAAAATATTACTTCAGGCAAAAGTTCTCGCGAGCATTTTTTATTATAAGTTCTTTAAACAAATACA ATAATCCGAACTCACGAGGGAAGTGACCATGGGAGGAAAGGCAGAAAAGATTCTTATTGTTAATGGCAATGCATGTTCGG ATTGACATCTTTGCTTGTCTTCGGTTGGATAAACACACTATTAAGTCCACAAAAAAAGACCTGAGTGGAGCATAACATTT TACTTAATTGACATCTTTGCTTGTCTGTGGTTCTTTGCTGATTTTATTTTTCTTCATATAGGTATGTTTAAGGCACACTG GTTAATTTTTTTGACAATGAGGTAGTTCAAGAATATGAGCATTTTACTGCATATTTAACTACAGAATTTTTTGGAATTTT CTTCCTTTTTGTTGAAACATGGTTTCCACTCTCTAGCTGGGCATGCTGCACATGGTTAAAAAGTATTTGATTAAAAATCA GCTTGTGTGACATTTACTAGTTTGGTTAATAAGAGCATTAGATTTATAGTCTCCATATATTTATACATTTGGTCGTTGAA GTGAGGATTGAACAAGTCAACCGCTAAAATGTGACTGGATCCAGGCTTAAGATAATGTTTCTTCTGCATCAGGGTACTGA CAGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACCATCTTTAAATGACTTAGGCTTTTCAAAAAGATATGTGAGATGT TTGCAGGTAAAGTATTAAATTTATATTTTGTGAATAATATTGAGAAAACTCAAGTGATTTCTTATTCTATATTTAATCAA GCCTTCTTTGCCTGTTACAATGGTTTGACAGATTGCTGAGGTTTGCAGTAGCATGAAAGATCTAATAGATATCTGTTATG AGCACAAAATTGGACCAATTGGTAATTATCTTTTGGTTTTTGTTACCATAGTACAGTGTCATGTTTTTCATATATTGAAG CTGTTTCAATTCAATACTTTATTGCTGCCCTGTTTATTAATTCAACACTTACATGCAGAGAGCTTGAAAAATTTTCCTCG ACTTGCAACCTCAGCAAAGCTCCAGACGCTGAAGACACCAGAGTTGGAACAACTAGCAAACGTTCAAGGTCTGCCAACTG ATCGTAACACACTTAATAAGTTGATGGCATCAAATCCTGGATTGAGTGACCATATAAACAATAATCATAACACGGTTAAT CGTTGTGGTTTGGGTGGGTCAGCAGTACAGGCTGCTATGGCACTGAACTACCAGAATCATATAATGAGGCAAAACTCGAT GAACTCAAGCCCTGGCTCACTTCAGCAAGAAGGACCCTCTTTCAATAACTCAAACCAGAGTCCCTCCTCAGCTTTGCAAG GTGCTGGTTCAATGCAGAATTCACCTATTAGTGGTTTACCAAGTCCACAGATACACCACCAACCGCATCAGCATCAGCAG CAGCAACACCTTTCACAACGCTCATTAAATGCAAATAGTTCACATCAACAAAACCAGTCACCGAGATCCCAAGGAAATCA TGCTGAGCAGGTGCACCAACTAATGCAGATGTCAAATAACAATGGGGGTGCGCAACCACCGTCTCGTGGTGGACCCATTG CAAATGGGAACATGGTCAAGAACGGGCCGGGTTTTGTGGGCCAAACTCCACCCATACCTGGAGGAGGTTCTGGCAATGTT CATGGGAATAATGGAGCTGTTTCTAGGAGTCATAGCTTCAAAGCAGCTTCAAGCAGTGATTCTTATGCAGCTGGAGGCAA CAATGGGTTCAACCAGAGAACATCTGATATTATACAACATCGCCATCAACAGCAAGAGCAAGATGTGGTACAGAACATTA CCCATGAGTTCACGGATGACTTCTTTAACAGTGATCTAGATGATAACATGGCTTTTGTCTGAAAGGAATAACTAACAACT TGGCATTTATTGTCCAATTGTTATCTTACTATCTTTGTACAGGATTCGTAAAATAGTTATTGCCCTTTTTTTCTTTTACT TTTTTCATGCTCATTTTCTTGATGAAATTTGTTATAACTCGTACCCACGTAGGGGTGTTTAGAGCTTTGATGGGTTTTTG TCTCGGCTGCAAATGTAATTTATGACAATTGAAAAAACAGTTGTTAGCTTATACGACACATTCTTGCCTCCATTGCTTTG TTTTCTGGTTAAAA
CDS sequence (LotjaGi2g1v0149000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCCCATGGCACCTTCTCGGGTGGCTGGGGGGTTAACCCAATCATCGTCAAGATCTGGAATTTTCTTTCAAGGAGA CGGGCAGTCACAGAATGTAGTTAACTCTCACTTAAGCTCGCCTTTTGTTAACTCATCTAACATAGTTCCTGGAAATGGGC GTTCGAACCTGGGTCTGGTTTCTAGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCGGCACCAAGTGTTGGA GCCAATTCTATGGTCACAGATGGAAATTCCGCACTCTCTGGTGGCCCCCACATGCAGAGAAGTGCAAGCTTTAACACAGA CTCATACATGAGATTACCTGTCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCTGGGTCACCAGTGATGGATG GTTCCTCTGTAGTACAGCAGAATAATTCTCATCAAGATCAGATTGCTCAACAATTGCAGCAGAATCAGCAGCTGCAGCAG AGTGCTCCTGGTGCTACTTCTCTGCCTGCTTCTCAAACTGGCCCTTCTGCGCCACAAATGGGAGCACAAGTAGTAGGATC TATGGTTCAAGATCCAAATACTGTATCCCACCCACTAAAGAAACCTAGGCTTGACATCATCCAGGGTGATTTAATGCACA ATCAGGCATTACAGCAGCTTCTTCAAAGACAAGAGACCATACAATTCCAAGGTCGTAATCCTCAGTTCCAGCAGGCTCTT TTTCTGCAGCAGCAGCAAAGGGTGAGGCAACAACAAATTCTACAGCACCACTTGCAGCAGGCACACTTGCAGCAACAACA ACAACAACCAATGCAATTAAGGCAGCAGTTACAACAACAAATGATGCAGCCTGTGTCTTCCGTGAAGCGTCCATACGACA GTGGTGTTAATGGTGTATGTGCCCGTCGATTGATGCAGTACCTTTATCATCAAAGGGAACGACGAAATGACAACAGTATT GCCTATTGGAGAAAATTTGTGGTTGAATATTACTCTCCTCGTGCAAAGCAACGGTGGTGCTTATCATTATATAATAACGT TGCGAACCACGCATTGGGTGTTTTCCCCCAAGTGTCTATGGATGCATGGCAGTGCGACATATGTGGTTCTAAATCTGGAA AGGGATTTGAGGCAACTTTTGATGTACTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTCTG TTTTTGGACTTGCCACATGAGTCAAAACTTCCTTCCGGTGCAATGGTGTTAGAATATCAAAAGGCAGTTCAAGAGTGTGT GTATGAGCAGCTTCGTGTTGTTCGTGAGGGTAAACTTCGTATCATATTCACTCAAGACCTGAAGATATTTTCTTGGGAGT TCTGTGCAAGGCGTCATGAAGAACTTCTTCCTCGAAAGTTTGTTGCACCACAGGTCAACCAATTAGTTCAAGTGGCTCAA AAATGCCAAAGTACAATTGCTCAAAGTGGGTCAGATGGGGTTTCTCAGGAAGACTTGAAAACAAACAGCAACATGGTACT GACAGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACCATCTTTAAATGACTTAGGCTTTTCAAAAAGATATGTGAGAT GTTTGCAGATTGCTGAGGTTTGCAGTAGCATGAAAGATCTAATAGATATCTGTTATGAGCACAAAATTGGACCAATTGAG AGCTTGAAAAATTTTCCTCGACTTGCAACCTCAGCAAAGCTCCAGACGCTGAAGACACCAGAGTTGGAACAACTAGCAAA CGTTCAAGGTCTGCCAACTGATCGTAACACACTTAATAAGTTGATGGCATCAAATCCTGGATTGAGTGACCATATAAACA ATAATCATAACACGGTTAATCGTTGTGGTTTGGGTGGGTCAGCAGTACAGGCTGCTATGGCACTGAACTACCAGAATCAT ATAATGAGGCAAAACTCGATGAACTCAAGCCCTGGCTCACTTCAGCAAGAAGGACCCTCTTTCAATAACTCAAACCAGAG TCCCTCCTCAGCTTTGCAAGGTGCTGGTTCAATGCAGAATTCACCTATTAGTGGTTTACCAAGTCCACAGATACACCACC AACCGCATCAGCATCAGCAGCAGCAACACCTTTCACAACGCTCATTAAATGCAAATAGTTCACATCAACAAAACCAGTCA CCGAGATCCCAAGGAAATCATGCTGAGCAGGTGCACCAACTAATGCAGATGTCAAATAACAATGGGGGTGCGCAACCACC GTCTCGTGGTGGACCCATTGCAAATGGGAACATGGTCAAGAACGGGCCGGGTTTTGTGGGCCAAACTCCACCCATACCTG GAGGAGGTTCTGGCAATGTTCATGGGAATAATGGAGCTGTTTCTAGGAGTCATAGCTTCAAAGCAGCTTCAAGCAGTGAT TCTTATGCAGCTGGAGGCAACAATGGGTTCAACCAGAGAACATCTGATATTATACAACATCGCCATCAACAGCAAGAGCA AGATGTGGTACAGAACATTACCCATGAGTTCACGGATGACTTCTTTAACAGTGATCTAGATGATAACATGGCTTTTGTCT GA
Protein sequence (LotjaGi2g1v0149000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPMAPSRVAGGLTQSSSRSGIFFQGDGQSQNVVNSHLSSPFVNSSNIVPGNGRSNLGLVSRDMNNAVLNSVANSAPSVG ANSMVTDGNSALSGGPHMQRSASFNTDSYMRLPVSPMSFTSNNISISGSPVMDGSSVVQQNNSHQDQIAQQLQQNQQLQQ SAPGATSLPASQTGPSAPQMGAQVVGSMVQDPNTVSHPLKKPRLDIIQGDLMHNQALQQLLQRQETIQFQGRNPQFQQAL FLQQQQRVRQQQILQHHLQQAHLQQQQQQPMQLRQQLQQQMMQPVSSVKRPYDSGVNGVCARRLMQYLYHQRERRNDNSI AYWRKFVVEYYSPRAKQRWCLSLYNNVANHALGVFPQVSMDAWQCDICGSKSGKGFEATFDVLPRLNEIKFGSGVIDELL FLDLPHESKLPSGAMVLEYQKAVQECVYEQLRVVREGKLRIIFTQDLKIFSWEFCARRHEELLPRKFVAPQVNQLVQVAQ KCQSTIAQSGSDGVSQEDLKTNSNMVLTAGRQLAKSLELPSLNDLGFSKRYVRCLQIAEVCSSMKDLIDICYEHKIGPIE SLKNFPRLATSAKLQTLKTPELEQLANVQGLPTDRNTLNKLMASNPGLSDHINNNHNTVNRCGLGGSAVQAAMALNYQNH IMRQNSMNSSPGSLQQEGPSFNNSNQSPSSALQGAGSMQNSPISGLPSPQIHHQPHQHQQQQHLSQRSLNANSSHQQNQS PRSQGNHAEQVHQLMQMSNNNGGAQPPSRGGPIANGNMVKNGPGFVGQTPPIPGGGSGNVHGNNGAVSRSHSFKAASSSD SYAAGGNNGFNQRTSDIIQHRHQQQEQDVVQNITHEFTDDFFNSDLDDNMAFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 10 | 25 | 16 | - | – | |
| PANTHER | 26 | 803 | 778 | 1.7E-217 | ||
| MobiDBLite | 130 | 181 | 52 | - | – | |
| MobiDBLite | 130 | 180 | 51 | - | – | |
| Coils | 141 | 161 | 21 | - | – | |
| Pfam | 303 | 563 | 261 | 3.6E-56 | ||
| MobiDBLite | 644 | 746 | 103 | - | – | |
| MobiDBLite | 644 | 813 | 170 | - | – | |
| MobiDBLite | 781 | 813 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0149000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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