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LotjaGi2g1v0152400.1

Overview

Field Value
Gene ID LotjaGi2g1v0152400
Transcript ID LotjaGi2g1v0152400.1
Lotus japonicus genome version Gifu v1.2
Description Gibberellin receptor GID1; TAIR: AT5G62180.1 carboxyesterase 20; Swiss-Prot: sp|Q0ZPV7|CXE1_ACTER Carboxylesterase 1; TrEMBL-Plants: tr|K7LE13|K7LE13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0152400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:54892688..54894104) extracted from Lotus japonicus Gifu genome v1.2.

TTTATTTTTCACTGTACAAATAAAAAAAAAAAAGACCTTAATTGTTCATTGCATTTGCATGTATAGGGCACTATATATTA TTGTTAATTAACTAGACAATTCATTTATTCAAAGCTCAAACTAAGACTGTGATCAGATCCAGAAACTAAGCTTAAAGCCT AGAGCCAAACAAAGCCTCTCCTACTTCACCATGTCCAATCAACCTTCCCCACCATCTCAAACCATCAACGCCTCTCCGAA TTTTCAAATTGTCTTCAACTCTGACGGCACTGTAACTCGTTTCTTCCATGATCCACTCACCCTACCCTCATCAGACACCA CTCTTTCAATTCTCACCAAAGATGTTCCCATCAACCGATCCAACAAAGCCAGTGTTCGTTTATTCCTACCTCGAAACGCT ATCTCAAATCACAACAATCAAAAGCTACCCATGATTGTTTACTTTCATGGAGGCGGCTTCATCATGCACAGCGCTGCTTC CATCTTGTTCCACAACTTCTGCGTCGAAATGGCAGATTCTGTCCAAGCCATCGTCGCCTCCGTCGATTACCGCCTCGCGC CGGAGCACCGATTACCCGCGGCGTACGAGGATGCCGTCGAGGCGCTTCACTGGATCAGAACCACTGAAGATGAGTGGTTG ACTAAATATGGTGATTATTCTAACTGTTACATAATGGGGAGTAGTGCTGGGGCTACTATCACATATCATGCAGGTCTACG TGCTGCGGCAGAGGCGAATGATCTTGAGCCGTTGAAGATTCAAGGGTTGATATTGCGTCAACCATTCTTTGGTGGGACCA AGAGGTCAGACTCAGAGTTAAGGCATGAGAATGACCATATTATCCCTTTGTCTCTTACTGATCTCATGTGGGAGCTTGCA TTGCCAATTGGTGCTGATCGTGATCATGAGTATTCGAATCCGACGGCTGGCGATGGTTTTGATGAGAAGATGGAGAAGAT CAAGGAACTTGGGTGGAGGGTGTTGGTGAGTGGGAATGGTGAGGATCCTCTGGTTGATCGTGAGAGGGAGTTGGTGATGC TGATGGAAGAGAAGGGTGTGCATGTGGTTAAGGATTTTCAAGAAGAAGGTCATCATGCGTTTGAGTTTTTTGAGCCATCC AAAGCGAAGAATGTCATTGGGTTAGTGAAAGCTTTCATTTTTTCTCAGGGTGCTTAAAGTCACCAACCATCATGTTGTTG CATGGATGTTTGCATTAATTCTTGTTTGGAAATAAATGGTTTTTAGAATACGCATATTGTAGACATTCAACAAATATCTA AAATGAGAAAGAAAGATATAAGAAGGATCATCGGTAATTGATGTGATTTATGATAGAGAGAAAAATAAAGTGGCTATTGA ATGTCTACTTTAACACTATTAATATGTCTATCACTATTATCTATTTGATGATTTCTG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0152400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCAATCAACCTTCCCCACCATCTCAAACCATCAACGCCTCTCCGAATTTTCAAATTGTCTTCAACTCTGACGGCAC TGTAACTCGTTTCTTCCATGATCCACTCACCCTACCCTCATCAGACACCACTCTTTCAATTCTCACCAAAGATGTTCCCA TCAACCGATCCAACAAAGCCAGTGTTCGTTTATTCCTACCTCGAAACGCTATCTCAAATCACAACAATCAAAAGCTACCC ATGATTGTTTACTTTCATGGAGGCGGCTTCATCATGCACAGCGCTGCTTCCATCTTGTTCCACAACTTCTGCGTCGAAAT GGCAGATTCTGTCCAAGCCATCGTCGCCTCCGTCGATTACCGCCTCGCGCCGGAGCACCGATTACCCGCGGCGTACGAGG ATGCCGTCGAGGCGCTTCACTGGATCAGAACCACTGAAGATGAGTGGTTGACTAAATATGGTGATTATTCTAACTGTTAC ATAATGGGGAGTAGTGCTGGGGCTACTATCACATATCATGCAGGTCTACGTGCTGCGGCAGAGGCGAATGATCTTGAGCC GTTGAAGATTCAAGGGTTGATATTGCGTCAACCATTCTTTGGTGGGACCAAGAGGTCAGACTCAGAGTTAAGGCATGAGA ATGACCATATTATCCCTTTGTCTCTTACTGATCTCATGTGGGAGCTTGCATTGCCAATTGGTGCTGATCGTGATCATGAG TATTCGAATCCGACGGCTGGCGATGGTTTTGATGAGAAGATGGAGAAGATCAAGGAACTTGGGTGGAGGGTGTTGGTGAG TGGGAATGGTGAGGATCCTCTGGTTGATCGTGAGAGGGAGTTGGTGATGCTGATGGAAGAGAAGGGTGTGCATGTGGTTA AGGATTTTCAAGAAGAAGGTCATCATGCGTTTGAGTTTTTTGAGCCATCCAAAGCGAAGAATGTCATTGGGTTAGTGAAA GCTTTCATTTTTTCTCAGGGTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0152400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNQPSPPSQTINASPNFQIVFNSDGTVTRFFHDPLTLPSSDTTLSILTKDVPINRSNKASVRLFLPRNAISNHNNQKLP MIVYFHGGGFIMHSAASILFHNFCVEMADSVQAIVASVDYRLAPEHRLPAAYEDAVEALHWIRTTEDEWLTKYGDYSNCY IMGSSAGATITYHAGLRAAAEANDLEPLKIQGLILRQPFFGGTKRSDSELRHENDHIIPLSLTDLMWELALPIGADRDHE YSNPTAGDGFDEKMEKIKELGWRVLVSGNGEDPLVDRERELVMLMEEKGVHVVKDFQEEGHHAFEFFEPSKAKNVIGLVK AFIFSQGA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23024
12 323 312 2.8E-140 –
PANTHER
PTHR23024:SF387
12 323 312 2.8E-140 –
Gene3D
G3DSA:3.40.50.1820
16 326 311 7.3E-82
IPR029058
SUPERFAMILY
SSF53474
17 323 307 4.5E-49
IPR029058
Pfam
PF07859
82 304 223 4.6E-48
IPR013094

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0152400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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