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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0154500 |
| Transcript ID | LotjaGi2g1v0154500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3S2I6|I3S2I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0154500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55209884..55213208) extracted from Lotus japonicus Gifu genome v1.2.
CTATAAATCTCTCGGTGGAGTTTGATTTGGGATGTGAAAGTTTGATTTTCCCTTAAAATGGAGTACGAATAAAACTTGTC TACATATATGCATTTCAACTAGAGAACATCAGGAGGTTGATCTTTTGCTGTGTAACGCATGGTCTCCTCCTCCAACCAAC ATGGTGAAGTGCAATTCTGATGGGAGTTTCTGTGATAGTAATCAGCGGATTGGTGGCGGTGGAATTATCAGGGATCACCT TGGCCGTTGGGTGGTGGGCTGCTACTCCGGGGAGGCTGGAGATAGTGCGTTCAGAGCAGAAGCCGTGGCGATGCGAGATG TTCTCCAGTTAGCCTGGGAGAAGGGGTTTAGGCGAGTGATCTGTGATGTTGATTGTGCAGAGCTGGCCTCCATAATAACA GATGAAGCAGCTTCTCAAAGACATGCAGAGTTTCTTGTGCTTGGTTCTATTCGTCAGCTTCTAGCACGAGAGTGGAACGT CAGGATCAATTGTGTGCATCGAGAGAGCAATATTGTAGCAGACTACCTTGCCAGGAGAGGTGCAGCAGCAAGATCTTCTG GGGCTTGGGTCATTGAGTCTCCTGACCCGGATGTTGAGTACCTTCTCTTGAAGGACTCGTTGTCCATTCTTTAGTTAGTT TTCTTTGTCTTTGTTAATTTTCCGATGTATCAAAAAAAAACTAGAGAACATCAGAGGAGGGTGCCCTCCCAAGTAAGCAC CAAACTTAATGAACATATTTTGAGGAAACTTTTGGCTAACACCCGACAATCCTTTCTTGAGTCTGTGCACTAAGCTAAGC TTTTCCACCCATTATGATTTTATCAACCATTTTGTGTTGACTTACCGTTGACTTGCTTGTATGCATGAATCTCTCTGCCA CTGAAGAATTTTATATTTAAACCATGTACTACAAAACTCACATTTATCCATGTTTCATTCCATAGTAGTGCTCACAAACT TTGACAGACCCAATAACCCATCCATGGCATCGTTTAACACTCTCTACCTCTTCATCCTTGCTAGCTTCCTTTGTTTTTCA GTCACTGAGGCACAGTACAACCCTTTTTATCTACACCAAGTCTGTTCCGGCAACAGAACCATTGCAAATACCTCCTTTAA ATTTGACCTCACAACCCTCTTTTCTTACCTATCATCCAATGCTACAAGCAATACACAATTCTACAACACCACAATCACTG GAAACAACCCCTCAAACTCAATCTATGGCATGTTCATGTGCCGCGGCGATGTCGGCTCTCACCTCTGTCAACAATGTGCT GTCAATGCAACCCAGCTCAATGCAACCCAGCTTCTATCATTTGAATGCCCCTTATCCCAAGAAGCTTTCATTTGGTATGA AGAATGCATGGTTCGATACTCCAACCACCCTTTCTTCTCCACCATGGCCACTGAGCCTTCTTCTCACTTCACAAACCTCG CCAACATCTCAAACCCAGAAACCTTCAATCCTCTACTGTCCACAGCCATGAACCAAACAGCAAATGAAGCAGCCAACCAC CCAATTGATGACAAGAAGTTTGCAACAAAGGAAGTCACCATCTCAGAATCACAAACCCTTTACATTCTAGCTCAATGCAC ACCAGATTTATCACCCCATGATTGCAAAACATGTCTCAGTAGAGCAATAACTGAAATCCCACTATGCTGTGAAGGAAAAC TAGGAGGAAGAATTCTATACCCAAGCTGCAACATTCGCTACGAACTCTACCCTTTCTACCGCTCCATTATCGCCCCTTCA CCTCTCTACATCCCTGCATCAAACACCTTGCGTGCAGATTCAAACCTCACAGATGACCCTATCTACCTCTCCCAAAATTG CTCTAACAACCAAACCTTCACCACCAACACCCCTTTCCAAACCTATCTCACCACCCTCCTCTCCTACTTGTCCGCCAACG CCACCGCCGGCAACAAGTTCCACAAAGCCAACGTCTCATACATGGTATACGGCCTCTTCATGTGCCGCGGCGACCTCCCC TCCCGCCTATGCTCACATTGCGTCCAACAAGCCACATCCCGAATAGCCTCCGAATGCCGGTCCTCCCCGGAGGCCATAAT TTGGTACAGCCACTGCACGGTTCGATACTCGAACCGGCATCGAACCGGCTTTTCTTCTCGGAAGTGGACAAGAGTCCAGT ATTTTCCGAGCTGAATATCACTGACCATGGTGGAAACTATAACTACAGTAACAGCGAAACTAACGTGGTGCAGAATTTTT TCACGTTTGCATTGTCGAACACGCTGGCTCAGCTGCTGTTTGAGACTGAGGACAGTGATGAGAGGTATGCAACGAAGGTG ATGAGGTTGAATGATTTGCAGATGCTGTATACTCTTGGACAGTGTACGCAGGATTTGTCGAGCGATGATTGCACGCGGTG TTTGGCGGATGTGATGGGAACCGCGATACCGTGGTCGCGGTTGGGGAGTGTAGGGGGGAGAGTGGTGTATCCTAGCTGCA ATTTGAGGTTTGAACTGTTTCAGTTTTATAGAGATGGTGGTGATGAAGCACCGCCGCCAACTGCAGGTACTAGTTTTTTT TTTTTTTTTCTGTCGGAAAAATCATTACTTATAGAAATTAAATTTCTCTTGATGTTGCTTTTAACTGTTGACGAACTAAA TTAAATTTCAAATAACACAAATTCTACAACTTTTGTGCTTAATTAAAAATTTAATTGACTTAAAAGGGTAAATTAGTTGT TTGCAAAACAATACTCCCTTCGGTCATTTTTATAAGAAAAACTTTGATAAAATCACACAAACTAAAGAAACTAATATATT TTATAAAATAAACTATTATGTTTAATTTCAATGATGTATTTTTCTTTTCACAAGAACAATCATGCTAATGATCATAAATG TTGACAATATTTATTGAGTGCTTGCAATTTCCCTCCAAATTTTTGCATGAGGAATATGTCTCTTTGCATTGGAATGTGAA TTATTTGACTTAATTTTATATATTGAATGAACATCAGGAAAGTTCTATGGTACCAAGCAATGAAGAAAACAAGCTCACAC AAGTTACAAACTCTGAAGTGATTCCTAGCAGGGTTGATACAAGTTGTGGACAGTTCAGCAATTCTGTTATAACAAATTTG ACAGCTAAGCAAGCCAACTCAGCAAGAGGCAGTTATGGCTAACTGATTTGGAAATAGAATAGGGTGTAGTAGAGTAACAT AATAGTTATGGTGTACTCTATTATAGCTAGTATAAATAAGTGCTGTACATTGTAAATCCATATACTTTCAATCTTGTTCA ATACGATTCTTCTTCTTCAATTCAATTTGCTCTGCAAATTTCTGA
CDS sequence (LotjaGi2g1v0154500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGTGCAATTCTGATGGGAGTTTCTGTGATAGTAATCAGCGGATTGGTGGCGGTGGAATTATCAGGGATCACCT TGGCCGTTGGGTGGTGGGCTGCTACTCCGGGGAGGCTGGAGATAGTGCGTTCAGAGCAGAAGCCGTGGCGATGCGAGATG TTCTCCAGTTAGCCTGGGAGAAGGGGTTTAGGCGAGTGATCTGTGATGTTGATTGTGCAGAGCTGGCCTCCATAATAACA GATGAAGCAGCTTCTCAAAGACATGCAGAGTTTCTTGTGCTTGGTTCTATTCGTCAGCTTCTAGCACGAGAGTGGAACGT CAGGATCAATTGTGTGCATCGAGAGAGCAATATTGTAGCAGACTACCTTGCCAGGAGAGGTGCAGCAGCAAGATCTTCTG GGGCTTGGGTCATTGAGTCTCCTGACCCGGATGTTGAGTACCTTCTCTTGAAGGACTCGTTGTCCATTCTTTAG
Protein sequence (LotjaGi2g1v0154500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKCNSDGSFCDSNQRIGGGGIIRDHLGRWVVGCYSGEAGDSAFRAEAVAMRDVLQLAWEKGFRRVICDVDCAELASIIT DEAASQRHAEFLVLGSIRQLLAREWNVRINCVHRESNIVADYLARRGAAARSSGAWVIESPDPDVEYLLLKDSLSIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 129 | 129 | 8.794 | ||
| Gene3D | 1 | 129 | 129 | 1.0E-14 | ||
| PANTHER | 2 | 155 | 154 | 3.8E-29 | – | |
| PANTHER | 2 | 155 | 154 | 3.8E-29 | – | |
| SUPERFAMILY | 2 | 130 | 129 | 9.23E-12 | ||
| CDD | 4 | 125 | 122 | 1.69923E-30 | – | |
| Pfam | 5 | 126 | 122 | 7.5E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0154500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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