Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0156300 |
| Transcript ID | LotjaGi2g1v0156300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-2; TAIR: AT5G03680.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9LZS0|PTL_ARATH Trihelix transcription factor PTL; TrEMBL-Plants: tr|V7BE19|V7BE19_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0156300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55511707..55514960) extracted from Lotus japonicus Gifu genome v1.2.
GCTAGGTACAAGAGTGAGTAGTAAGTCTAACTTTTAAGATTTGCGGTAGACTCGGATCCTGTCTCCCTTCAACAATAAAT TAATAAATAAATAAGACAGAACCAATTAATCTCTTGAGTCTTGACCCTTCTCTCATCCTCTGTCTGCTCTACACTTCCTT CTCTCTCCCACACAAAACACTGTACTACTTCCATTTAACAAGATGAGTGACCCATATGGTTTTCCAGAGGATCTCCGGAG ACTAATATCAGCTAGAACCACCACCAACAACACACTTTCAGAGCCACCACCGTGTGCTTATGGTGGTGGACACGGTGGTG TAAACGCTCCTACTCCTTTTTTTCCTCCACCAAACAGCTACGACCCTATGATGGTAGGGGATCACGTTTTCTTACCTCGT GGCTTCACTCATCAGTATCTTCATCATCATGACTATTCCACCAGTACTGTTAACCCCACAAATAGCTCTACTACTGTTGC TGCTGCTGCTTCAGATCATGCTGCTGCTACTGCTACTGTTACTACTTCTGCATTATTCTGCAGCAGAATAGACACTGCTG CTACTGCTGCAGATAAAGGGTGGTTGGGGTTTGACTCCGGGAACAACAGGTGGCCTAGGCAGGAGACTCTTTCTCTTCTT GAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAACCACAAAGCACCCTTGTGGAATGAAATTTCTAGGTATAT ATAAACATATTCAGTACATGTGTTTGGATGTACCGTGAATTATGACAGACAGAAGCAATTTTTCTTTAACTCCTGCTACT GTTCACCATAATTTTGTTTTTAGGTGTCCAGACATACACATACTCAAGAATGAAAAACCCCACTTTAGCTTTTGTGTTTG TTTTCTGTCTAGACTCAGATCCATGATTGGTTTGAAAAGAACAAGTATAGTAGTTCATAGTAGGGAATGAAGAAATTAAA TATGGTTGTTCACCTGTTCTTTGTTCTAACTGTTTTTCCTTTGGTCTTTACTGGTTTAGCAAGTTTTTTTTGGGCTAATT ATTCCTTTCTTGCGTTTGAAAATGACAGGCTATAGATTGGAACTGGGAGATTCATGTGCCTTTTTTTATAGCTATTTCTA GTTGTTTCTATGAAATTCATTCCACTGACTGTCTCAATGTGTGTGTCTATACTTGCACTGGTTTTATTTTTCTGTGAGTG AATCATTGCAGCTAAGCTAGGTGCAAGCATTGCAATAGCTGGCTCGCCCTGAAAGCCTGTCTTTGTTTTGTTTTGTAGTT CTGTTAAACCTAATTTGCTCAGCTATATAGCTAGGGCTATGGGAATTTTGTTAATCCAAATGCAGATAATTAGTGTCTTC TGACATCTTTATTGAAGAGAGAATGTATCCATTATATTAATTAAATTATAATATCCTTCTGCTTAAAATAAGATTATTCT ATCACATCCCATCAAAAAAAAAAAAGATTATTCTATCACATGATTTGTGCTTCATTAATTAGTGCAAGATTTGACCCCTT ACTTTAAATTTTAAGGAATTGTTTTGATTTATTCACATTCCATTTTTTTTTCAATCTTATTTTTCAATTATTTAATCTTT CTATATTTTTATTCTTTTCTGATCAAGTATCACATTACTTACTTCTTTCTTTTCTCTTCTTACATGTATGAGGTGAAAGT TGTTTTTCAGAGTCAACTAAACTTTATTCCTGAAGAGATATTGTTCCCAGATCTGTTGGAAAAATTTCATCAACTCCCAA ATTTCACTTAGATCAAGATACTCAGGAATTGTTTTTTATAAGTCAAAGTTCATTGAAGAGATATGAGTGTGAATGTATAA AAATGTTGTAGAAGTTCTAATAACTTCTCATCCTTCATGCTTTTTTTTTATATATATATACATATAATAAAAGCTGTGTG ATGCATGTGTTTCAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATT TGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGATTCTTTAGGCAGCTT GAAGCAATATGTGGAGAACCAAATACTCATCATGCCTCAACTTCAGACAAAAACCCCCTTGGTTGTATTCAAACTCCAAC TTTCACAATTAGCCAAGAGAACAACAACAACAATGGCCATGACTTCAACAACCTCAAGTCCTCAGAGAGTCTAAGTGTCT CAAACTCATCTGAATTTGACACCTCCTCATCTGAGAACAATGATGAGGATCTTTCAGCCATTGCACACATGATGAATAAG CAGAAAGGGTTACACCAGGGACAAAGTAGTCATAGAAGGAACAGAAAAAGTTGGAGAGCTAAAGTGGAGGAGATGGTGGA TTCCCACATGAGGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAAAATGTTGAATGTTGTTGAGCAACGAGAGCAAG AGATGGTGTCTAAAGAGGAAGAAAGGAAGAAAAAAGAGTCCTTGAGGTTTGATCAACAAGTGCATCAACTTTGGGCTAAG GAAAAAGCATGGGTTGAAGCTAGAGATGCTGCATTGGTTGAGGTTGTGAAGAAACATATTGGGATAGAACTTGAAGCATT GCAACCAAATAAGAACAAGAACCAAGCAAATGATTATCACTGTGAAGGTGTTGAACAAGGAAGTTGGTCAGAGATGGAGA TTTCAAACTTGATTCAGCTGAGGACTAGTTTGGAACAGCGAGTGAGAGAAAGTGGGTATTTGGAGAATAATGTTGTTTGG GATGAAATAGCTGAGAAAATGGCTTGTTTGGGGTTTGAAAGGAGTGCAGGTGAGTGCAAGCAAGTGTGGGATGAGATCAG CATTTCTCTGAGAAGGACAGTGGAGGAGTGTGGTGGCAAAGCAAGGCCTTGGTGTTTGGGACTGAAGCTGACGGATGATT GAAGTCATGCATCACAGGTTTTGGAGTTCTGAGCGTGAAGAGGAAACTTGTAGCAGAAACAAGGGCGTAAAAGGGTAATT CATTGGGTTTTGTTTCCATCACATTCTTTTCATATCTGTTTCTACTATTTTTATATCACTTATCATGTCTACTATTTTTC TATTCTATTTCACTCTTTAAGTGTCGATGAAAATGAAGTGTAAATTAACCTTTTCTAGAAATTATAACATGTGTGGTTTA TAGAATAATTATATCTTCACCACATTTTTAAGGTGTGGAGAGGTGGAGAAAAAG
CDS sequence (LotjaGi2g1v0156300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACCCATATGGTTTTCCAGAGGATCTCCGGAGACTAATATCAGCTAGAACCACCACCAACAACACACTTTCAGA GCCACCACCGTGTGCTTATGGTGGTGGACACGGTGGTGTAAACGCTCCTACTCCTTTTTTTCCTCCACCAAACAGCTACG ACCCTATGATGGTAGGGGATCACGTTTTCTTACCTCGTGGCTTCACTCATCAGTATCTTCATCATCATGACTATTCCACC AGTACTGTTAACCCCACAAATAGCTCTACTACTGTTGCTGCTGCTGCTTCAGATCATGCTGCTGCTACTGCTACTGTTAC TACTTCTGCATTATTCTGCAGCAGAATAGACACTGCTGCTACTGCTGCAGATAAAGGGTGGTTGGGGTTTGACTCCGGGA ACAACAGGTGGCCTAGGCAGGAGACTCTTTCTCTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAAC CACAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAA AGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACA GATTCTTTAGGCAGCTTGAAGCAATATGTGGAGAACCAAATACTCATCATGCCTCAACTTCAGACAAAAACCCCCTTGGT TGTATTCAAACTCCAACTTTCACAATTAGCCAAGAGAACAACAACAACAATGGCCATGACTTCAACAACCTCAAGTCCTC AGAGAGTCTAAGTGTCTCAAACTCATCTGAATTTGACACCTCCTCATCTGAGAACAATGATGAGGATCTTTCAGCCATTG CACACATGATGAATAAGCAGAAAGGGTTACACCAGGGACAAAGTAGTCATAGAAGGAACAGAAAAAGTTGGAGAGCTAAA GTGGAGGAGATGGTGGATTCCCACATGAGGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAAAATGTTGAATGTTGT TGAGCAACGAGAGCAAGAGATGGTGTCTAAAGAGGAAGAAAGGAAGAAAAAAGAGTCCTTGAGGTTTGATCAACAAGTGC ATCAACTTTGGGCTAAGGAAAAAGCATGGGTTGAAGCTAGAGATGCTGCATTGGTTGAGGTTGTGAAGAAACATATTGGG ATAGAACTTGAAGCATTGCAACCAAATAAGAACAAGAACCAAGCAAATGATTATCACTGTGAAGGTGTTGAACAAGGAAG TTGGTCAGAGATGGAGATTTCAAACTTGATTCAGCTGAGGACTAGTTTGGAACAGCGAGTGAGAGAAAGTGGGTATTTGG AGAATAATGTTGTTTGGGATGAAATAGCTGAGAAAATGGCTTGTTTGGGGTTTGAAAGGAGTGCAGGTGAGTGCAAGCAA GTGTGGGATGAGATCAGCATTTCTCTGAGAAGGACAGTGGAGGAGTGTGGTGGCAAAGCAAGGCCTTGGTGTTTGGGACT GAAGCTGACGGATGATTGA
Protein sequence (LotjaGi2g1v0156300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDPYGFPEDLRRLISARTTTNNTLSEPPPCAYGGGHGGVNAPTPFFPPPNSYDPMMVGDHVFLPRGFTHQYLHHHDYST STVNPTNSSTTVAAAASDHAAATATVTTSALFCSRIDTAATAADKGWLGFDSGNNRWPRQETLSLLEIRSRLDSKFRENN HKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTHHASTSDKNPLG CIQTPTFTISQENNNNNGHDFNNLKSSESLSVSNSSEFDTSSSENNDEDLSAIAHMMNKQKGLHQGQSSHRRNRKSWRAK VEEMVDSHMRKIIETQDAWMEKMLNVVEQREQEMVSKEEERKKKESLRFDQQVHQLWAKEKAWVEARDAALVEVVKKHIG IELEALQPNKNKNQANDYHCEGVEQGSWSEMEISNLIQLRTSLEQRVRESGYLENNVVWDEIAEKMACLGFERSAGECKQ VWDEISISLRRTVEECGGKARPWCLGLKLTDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 511 | 506 | 5.4E-189 | – | |
| PANTHER | 6 | 511 | 506 | 5.4E-189 | – | |
| SMART | 133 | 196 | 64 | 1.6 | ||
| CDD | 135 | 201 | 67 | 6.05263E-23 | – | |
| ProSiteProfiles | 135 | 194 | 60 | 6.888 | ||
| Pfam | 135 | 222 | 88 | 1.8E-19 | – | |
| Gene3D | 137 | 200 | 64 | 2.4E-24 | – | |
| MobiDBLite | 248 | 286 | 39 | - | – | |
| Coils | 340 | 367 | 28 | - | – | |
| ProSiteProfiles | 420 | 486 | 67 | 6.737 | ||
| SMART | 424 | 488 | 65 | 0.7 | ||
| Pfam | 427 | 503 | 77 | 1.1E-10 | – | |
| Gene3D | 428 | 491 | 64 | 1.1E-16 | – | |
| CDD | 428 | 492 | 65 | 4.45893E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0156300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…