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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0162000 |
| Transcript ID | LotjaGi2g1v0162000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1442 family protein; TAIR: AT5G62280.1 DUF1442 family protein (DUF1442); Swiss-Prot: sp|O89939|GAG_HV1SE Gag polyprotein; TrEMBL-Plants: tr|I3SHM3|I3SHM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0162000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56780992..56782331) extracted from Lotus japonicus Gifu genome v1.2.
TATAGTAATACCAATTAAATAATAATCATTTTTAATAAACCTACCCACACAATAAAATTCATTATCAGTTTGCAACATGT TTTTCAATGTCCTGAGCCAATTGGAATGACACATGACCCACTATATGTCCCTTGCTTGCTCCTATATAAATAACCTCCAC AACCAAATCCAATACACACAACATCATTTGCATCTAGGAGAAGCTTTAGTAAGAAAAAACCTCATAAATCAAACCATGGC TTGCTGGTCTGCAGAAAATGCCACAAAGGCCTATCTAAGCACTTTGAAAATGGTGAGTATTGCATTATCTTCCAACACAA TTACAAACCCCCTTTTATAAATACTTTTACACCATATTATTTTGCTAATATTTTCAATTTTCTATAACAATCTTTTTCTG ATCTGATTTTGGGTTATTTTTCCTCAGGGTCAAAATGCAAAAGAACCAGATGTTGCAGAGTTTATATCAGCACTAGCAGC TGGAAACAATGCACAACTCATGGTTGTGGCTTGTGCTGGTGCAGCAGATTCCACCACACTAGCTTTGATAGCTGCTGCTC ATCAAACTGGTGGCAATGTTGTTTGTATTGTCAAAAGCCATGAAGATCTCAAAGCCTCAAAAAAATTCCTGAGACTAGGT GCTAGCCAAGTGCAATTCATGGTTGGAGAAGCTCAAGAATTGCTTTTAAACCAAGCAGATTTTGTGCTAATTGATTGTAA CCTTGTGAACCATGAAGAAATTGTCAAAGCAATAATCCAAGGTGGTGGTGGTGGAAGGAAAAATGGCACAGTGGTTGTTG GTTACAATGCATTTGGGTGCAGAGGTTCCTGGTGGTCATGTGAGTCAAAAACTCAGTTGCTTCCAATAGGAGAAGGGCTT CTTGTGACAAGATTTGGAGGGGCAGAAGTATCAACTACTAGTACAAAATATGGATCTAAAATGAGTAAGAACAGGAGTAG ATGGGTTGTCACTGTGGATAAATGCACTGGTGAAGAACATGTTTACAGGATCAGACATCCACAAGGGAAAGTGATTCAAG CTTAATCAAGTGGTTAATTTTGGATGCAAAATGCAAAAAAAATTAAGATTTAGCCCACATCCCACCCCATTCTTCTCTAA ATTTTGCTTCTATTAATTAGCACCTAGGACCTGTCCTGTTCTAAATGTACATAGAAAATTATAAACATATAATGCTTAAA TTGGTTTGAAATTTTTTCAAAAGTTTGTATATGTTCTGTTGGAGAAGGATCAAAACATACCCATTGCAGACTCTTACTCA CACTTACAGCCCGATTGATTTACCGTGAAAAAAATATGAAAACGAAAAAATAAAACATTT
CDS sequence (LotjaGi2g1v0162000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCACTATATGTCCCTTGCTTGCTCCTATATAAATAACCTCCACAACCAAATCCAATACACACAACATCATTTGCA TCTAGGAGAAGCTTTAGTAAGAAAAAACCTCATAAATCAAACCATGGCTTGCTGGTCTGCAGAAAATGCCACAAAGGCCT ATCTAAGCACTTTGAAAATGGGTCAAAATGCAAAAGAACCAGATGTTGCAGAGTTTATATCAGCACTAGCAGCTGGAAAC AATGCACAACTCATGGTTGTGGCTTGTGCTGGTGCAGCAGATTCCACCACACTAGCTTTGATAGCTGCTGCTCATCAAAC TGGTGGCAATGTTGTTTGTATTGTCAAAAGCCATGAAGATCTCAAAGCCTCAAAAAAATTCCTGAGACTAGGTGCTAGCC AAGTGCAATTCATGGTTGGAGAAGCTCAAGAATTGCTTTTAAACCAAGCAGATTTTGTGCTAATTGATTGTAACCTTGTG AACCATGAAGAAATTGTCAAAGCAATAATCCAAGGTGGTGGTGGTGGAAGGAAAAATGGCACAGTGGTTGTTGGTTACAA TGCATTTGGGTGCAGAGGTTCCTGGTGGTCATGTGAGTCAAAAACTCAGTTGCTTCCAATAGGAGAAGGGCTTCTTGTGA CAAGATTTGGAGGGGCAGAAGTATCAACTACTAGTACAAAATATGGATCTAAAATGAGTAAGAACAGGAGTAGATGGGTT GTCACTGTGGATAAATGCACTGGTGAAGAACATGTTTACAGGATCAGACATCCACAAGGGAAAGTGATTCAAGCTTAA
Protein sequence (LotjaGi2g1v0162000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTHYMSLACSYINNLHNQIQYTQHHLHLGEALVRKNLINQTMACWSAENATKAYLSTLKMGQNAKEPDVAEFISALAAGN NAQLMVVACAGAADSTTLALIAAAHQTGGNVVCIVKSHEDLKASKKFLRLGASQVQFMVGEAQELLLNQADFVLIDCNLV NHEEIVKAIIQGGGGGRKNGTVVVGYNAFGCRGSWWSCESKTQLLPIGEGLLVTRFGGAEVSTTSTKYGSKMSKNRSRWV VTVDKCTGEEHVYRIRHPQGKVIQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 34 | 217 | 184 | 5.1E-10 | – | |
| PANTHER | 42 | 260 | 219 | 3.5E-103 | – | |
| PANTHER | 42 | 260 | 219 | 3.5E-103 | ||
| Pfam | 44 | 254 | 211 | 1.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0162000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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