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LotjaGi2g1v0168500.3

Overview

Field Value
Gene ID LotjaGi2g1v0168500
Transcript ID LotjaGi2g1v0168500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 6; TAIR: AT3G55620.1 Translation initiation factor IF6; Swiss-Prot: sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2; TrEMBL-Plants: tr|A0A0L9T9E7|A0A0L9T9E7_PHAAN Eukaryotic translation initiation factor 6; Found in the gene: LotjaGi2g1v0168500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:58069322..58072271) extracted from Lotus japonicus Gifu genome v1.2.

GTTTATATCGTTAGCATTGCTTACCATATGAAACTTGGTTGGTTATTTATTTTATTTTTCCTGATATGAATTCTAACTCT GTAGATCTTCAATTTGATTACTTCAGTCAAAGAATTCTGTCCATTCTCAATCATGGCAACTAGTAAGTGTGACATATATG TTTTCTCTATTGTTGAATCTGTATATTTTTATAGGAGTTTGTTTCTGTCCGTAATTAGTATTACTTTATGATCTTCTTTG GTGTGAATGATTTTTACTTTTTAATTGATACATTGAGTTAATTTGTGTTTTCCGCAGGACTTCAGTTTGAGAACAATTGT GAAATTGGAGTGTTCTCTAAACTCACCAATGCCTATTGCTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGGTTCTC ATTCTTTTTTGACTTATAATTTACTCCAATAGGGAATTAAGTTGTACAAGTTACTAGTATTTGATTTCAAATAGTTTGAA ATTGTTATGATGGTCCTCGAAATTAATATATTAATATGTTGCATGCTGTAGTGTATTCGAAACTGAGTTGGCAGATGTTA TCCCTGTGGTCAAGACATCTATTGGGGGCACTCGTATCATTGGTCGTCTTTGTGCCGGTAAGGTTTTCTTACCCTCAGAT AGTCTTTTTTCTCTAGGAGTATTAGTCTACATTTGGCTGAGATGGCTCCATACTTTTAACAACATTCTTACATTAGTTAA CAAAGGAAAAAATGACTACATCTGTATGTTATATTTTTTCACTATCATTTTATTGTACCTAATTAAATTACCTTTTTATT GGTTTGTAGGAAACAAGAATGGGCTTCTCTTGCCCCATACCATCACTGACCAAGGTGCATATTTTATATGTTCATTTTAA TTCTTAGTACTTCATGATGCTATTTTAGTATCATGTACTATGTGGCCTGTTAGAATGTCTTTATAACTGCTTGCTCTTTG GAGGTTTCGTGTCCCTATTTTTTGGTTCGATCCTCTTCTTTTCCCTTGAGGAGTGTTTCGCAGTTTTTCCGGATGATATA ATCTCTTGCTTTAAAAAAAAACTTCCCTTTTCCCCAAAAAAGGAAAAAATCATTTTTTTGACTTTGTCAATGAATATCAA GCTGTTACATTCAGCATTGGACTGATGATTCTGACTGCTGCAACAAAGATGAGATGCTGAAGTTTGCTCTATTTCTATAA AAAAACACTTGCGATTGTATAATTGTAATTGAAAATAATTAATCAAACATTTCTGTTTAATTACATAATTACAGACAGAG AATATTTGATGGTTGTCTTGTGGCTTATCCAACTAGCTGATTTTCTTAAGATTCTGAAACTTTTTGTTTGCCTGCAAGCA TGTCATATCTTTATATGAACTCTAGTCTAGGCATTTCAGCATTTTCTTCATTTTTTGCTGGCTATAAATCTTCACTTGTA CAAATTCTCTGATGTCGGTGGGCTTTCTGGAATATGACAGTATTTTATTTTCCTCTTCTATCTTATGTTTCGTCTTTGTT GGTGGCTTGTAATTCCACATCTGTTATGATATTATACTGACTTATATTGGTCTTATTGCCATGGTTGTTACTGAAGAACT TCAACATTTGAGAAACAGTCTGCCTGATCAAGTTGTTGTTCAGCGGATAGACGAAAGATTATCTGCTCTGGGAAATTGTA TTGCATGTAATGACCATGTGGCCCTCACTCACACTGATCTTGACAGGGTATTGTCTTACTGTAGATTATATATTTTTTTC TTTCTGTACTAGTTAGTTATTCATGTTAAGGATGGGTTATTGATTTGAAGAGATACTTATATGTCAAGTTAAGCATGGAT ACCGAGAAGGGAAATATGCAAATTATCACCTTAATTTAGACAATTCAACTAAACTGTAAATAGTTCCTTGAAAAGAAAAT GCAGAATTTACTTCGCAAGGTTTCTGGGATGTGTTAAAGCCAATTGAATCTGACCACCCTATGATGTATTTGACCTTTAC AAGTCATTCCAAATATACAATTCAAATGTGGTCTTGGGTTCATGGTTATATATACTCAGAACTTCAACTTCTACAGAAAA AAGGAAGAAACTTATTTGAATGGCCATTAAGTTTTTCTTCTCTTTTGTTGGCATTTTTGAATGAAGAATGCTGAGAAAAG CCTGAAGATTAAGCTGGCCAGTTCCTTTTGCTTGTATTTGTTGGTGAAACAAATCCTTCTTAATAATAACTTAGATTGTT ATACTAGATAATTTTCTATTGAGGATTTTTATCAAGTCTTGCTTGTCTGCTGAATGTGTTCTCTTACTATGAAACATTGG GAGCTAATTTCTCATATTGGGTCATTAAAATGTAATCCCATTACAGTTTCAAATTTCTCTTCCTTTTTCCATCATGTTAT TTCCATTTATCTTTAAAATTTTATATATGAATCCTGGCTTTCTCTAGTATTTACTGGGAAGTTTTGTTCAGGAAACTGAG GAGTTGATTGCCGATGTTCTTGGGGTGGAAGTTTTCAGGCAGACAATTGCTGGCAATATTCTTGTTGGTAGCTACTGTAC CATCTCCAATAGAGGTGGCTTGGTGAGTAAACTTTAATTCTTCTTCTTATTATTATTTAGCCCATGGCTTCACTAATATT CAATTTTTATTTCGAAGTTCGCTTATAATTTAATCCATAACAATTTTTACAGGTCCACCCTCATACTTCTGTGGAAGACT TGGATGAACTTTCTACTCTACTCCAGGTTCCTTTGGTGGCCGGGACTGTGAACCGGGGCAGTGAAGTTATAGCTGCTGGA ATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTTTCTGTAATTGAGAGCGTTTTCAA GCTGAGGGAAGCACAGCCTAGTGCCATTGTGGACGAGATGAGGAAATCCCTTATTGATAGCTATGTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0168500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACTAGACTTCAGTTTGAGAACAATTGTGAAATTGGAGTGTTCTCTAAACTCACCAATGCCTATTGCTTGGTTGC TATTGGAGGTTCTGAAAACTTCTACAGTGTATTCGAAACTGAGTTGGCAGATGTTATCCCTGTGGTCAAGACATCTATTG GGGGCACTCGTATCATTGGTCGTCTTTGTGCCGGAAACAAGAATGGGCTTCTCTTGCCCCATACCATCACTGACCAAGAA CTTCAACATTTGAGAAACAGTCTGCCTGATCAAGTTGTTGTTCAGCGGATAGACGAAAGATTATCTGCTCTGGGAAATTG TATTGCATGTAATGACCATGTGGCCCTCACTCACACTGATCTTGACAGGGAAACTGAGGAGTTGATTGCCGATGTTCTTG GGGTGGAAGTTTTCAGGCAGACAATTGCTGGCAATATTCTTGTTGGTAGCTACTGTACCATCTCCAATAGAGGTGGCTTG GTCCACCCTCATACTTCTGTGGAAGACTTGGATGAACTTTCTACTCTACTCCAGGTTCCTTTGGTGGCCGGGACTGTGAA CCGGGGCAGTGAAGTTATAGCTGCTGGAATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAG AGCTTTCTGTAATTGAGAGCGTTTTCAAGCTGAGGGAAGCACAGCCTAGTGCCATTGTGGACGAGATGAGGAAATCCCTT ATTGATAGCTATGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0168500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATRLQFENNCEIGVFSKLTNAYCLVAIGGSENFYSVFETELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTITDQE LQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYCTISNRGGL VHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSL IDSYV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10784:SF4
1 245 245 1.8E-157 –
PIRSF
PIRSF006413
1 226 226 7.7E-98
IPR002769
PANTHER
PTHR10784
1 245 245 1.8E-157
IPR002769
Hamap
MF_00032
1 245 245 140.037
IPR002769
SUPERFAMILY
SSF55909
1 224 224 7.95E-94 –
Gene3D
G3DSA:3.75.10.10
1 225 225 1.7E-114 –
CDD
cd00527
2 223 222 8.59972E-128
IPR002769
SMART
SM00654
3 204 202 7.7E-137
IPR002769
Pfam
PF01912
4 203 200 3.2E-81
IPR002769
TIGRFAM
TIGR00323
4 224 221 1.0E-82
IPR002769

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042256
Biological process Mature ribosome assembly The aggregation, arrangement and bonding together of the large and small ribosomal subunits into a functional ribosome.
Subterm of
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0168500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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