Transcript — View — Lotus Base

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LotjaGi2g1v0170900.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0170900
Transcript ID	LotjaGi2g1v0170900.1
Related isoforms 1	LotjaGi2g1v0170900.2
Lotus japonicus genome version	Gifu v1.2
Description	Methyltransferase family protein; TAIR: AT1G73320.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q8C436\|MT21D_MOUSE Protein-lysine methyltransferase METTL21D; TrEMBL-Plants: tr\|G7KPC6\|G7KPC6_MEDTR Methyltransferase family protein; Found in the gene: LotjaGi2g1v0170900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:58621837..58624599) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGAACCGACAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGATGCACCGCCACCGATGGTGAAGTTGGGTTCCTA CGGTGGCGAGGTGAGGTTGGTGGTTCCTGGGGAGGAATCAGCTGCGGAAGAGACCATGCTACTCTGGGGTATTCAGCAGC CTACTCTCTCCAAACCAAACGCTTTTGTCTCTCAATCTTCTTTGCAACTTCGCCTTGACTCATGTGGCCACTCTCTCTCA ATTCTCCAATCTCCTTCCTCACTGGTATCTCTCTCTTCTCCTTCAATTTCTCTTCCCCTCTCATTCCATGTAAAGCTTTT TTAAATCCTGAGATATTGCTGTTATTTAAGTTTTTTGATCAATTTTTTTGTTTTGATGGTGGTTTGAATTCTAGCTTGAT GACCCATTTTAGTTTTTAGCTCAAACATGATGACCCTTTTCATAAAATGCTATGCTATTGATTTTTTCTGCTTAAAGTTA GAAGCTTGCAATAGCCCTTGATGCAATGTGTTGGTGTGTTTCCTCCGGGCACATGATAATTGAGGGTTCGAGATTTGTGG TTTTGTAATATGATTTAGGTGTAATGTGATGATTTTGTTCAAGGGGATAATCCACATTAGTGCTTAAACAGCTGCTTCAG CCTGTGTCCAGTTTTTTTTTTAAATTGCGGTTGCAGCTGCGTTGCATAATTGCTGATCAATGGCAATGTGGCAGCAATTG CGATCATGATGCCAATGCATGGAGTCAAAGTAGCTTTTGTGGCTGCAATTGCGGTTGCGGACTGCTATTTAAAACCCTGC CTGTGTCTGTTCAAACTATTGATTATTACTTTTTAAACTTTTATGGTGAAATTGGCATCATAGCAAGCATTTGCCTATTG TCAAGTTCAGTTTATAGTTATGGCTTTTTGAACTTTTGATTCAAGGGTGCGCCTGGAGTAACTGGAGCAGTGATGTGGGA CAGTGGAGTTGTATTGGGGAAGTTTTTAGAGCATTCTGTTGACTTAGGGACGCTTGTTCTTCAGGAAAAGAAGATTGTTG AATTGGGATCTGGTTGTGGATTGGTTGGGTAAGTAATTACAATCACAACGTCACTCTCATTGTTCATCAGTTTCTGCTAA ATTGATATGTCTTGTCAATAATTTTTCAATTAATTTTTAGTTTGAAAGAGCTTATTTGAGTTTATTTTCATAAGTTGTTC AGATTAGCTTATGAATAAGATATTATGCTTATCTATGAGGAGGGCTTGCTATCGCAACCTTTTCTCCCGGTGTATGTCAA AAAGAATGACGAACCAACCCACCCTTTTCTGTTCGGTCATAGGTTGGTGTCCAAAGAACAAGAGTCGGCTTCCTTAACAT ATTTTCAGCTCACTTCAATAAATTTCTCGAATTAGCTTATGAATAAGTGCTTGTGTGATAAGAGCTCATTGCCATAAGCG TTTAATTAAGTTGTTTACCAAAACACACCCTCAATGAACTAGGAATGTAGAAAATTGACCTTTTAGATTGTTTTTTTATC ACTAACTTGTCTAGCAACTGGTAAATATTTGTTCTTTAGCTTGTTCATACTCAGTCTGTAATGCAGTATTCTTATTTTTT ATTTCTTAGTTGCATTGCAGCTCTTTTGGGTGGTGAAGTCATTCTTACTGATCTGCTGGATAGGCTGAGGCTACTTAGAA AGAACATTGAAACCAATATGAAACACGTTTCTCTACGGGGTTCGGCGACAGCAACTGAACTCACTTGGGGAGAAGATCCT GACCGAGAGCTCATTGATCCTACACCTGATTTCGGTAGTAACCCTCCCTCAACCCTTTCTACCACATAACAAGAAATAAA CAAGATTCAATTATAGGAACCAGAAAACTTATATTGTGACATGTTGCAGTCAAATGTGTTGATGTGATTATCATCATCAT TTTAATAGCAGATTTGTGGTTAATTTTGTTTTACATAGTCAATATTTGAATTGTCCCATGCCATACATTACTGCCATCCT TTTTTAGGGGGTGGTAAAATACTACTTTTCAGTTTTAATCAAATATTTTTTTGTCTACGTGTATTTGCAAATGCAACCGT TTTTACATGATTAGTATCATTTGATAATGTCATCACAACTTATGATCCCACCATGCTTCATTGCTCCCATAAAAACATTT GATTTGGCTTTGTAGAAGTATAGTTTTATCTTTGGTTGTTCTTTTTGTCTTTAACCCGGATGTTCTCATCCATTTGGGAA ACTACAGCTGTTACTATCAACAAATGACTTTTACAAGATTCGAACTTGTGTTCTAAACCTCACGGTTGCCCATGTATAGT TTTACCTTATGCTATGGGTATACACCTCTTGCATTGTATGGCTCTTGCTAATTTTGTGTGGGAAAAATGTCCATTGTGGT GTTTGTGGGCTAATGAGAAAGAGTGCCATTTCTTGTTTTCAGTTGTAGGATCTGATGTTGTGTACAGTGAGAATGCTGTT GTGGATCTTGTAGAGACACTTGGGCAGCTCTCAGGGCCTAATACAACAATATTTTTGGCTGGGGAACTGCGAAATGGTAA ACGCATTGCTCCTTTTTCTTTCTTTTCGTATTTCAGTCCTTATCATAGTTCTGAATTAGTGTTTTCTGATTTCAGATGCC ATTCTTGAGTACTTCTTAGAAGCTGCAATGAATGATTTCACAATTGGCCGTGTGGATCAAACACTCTGGCATCCAGAATA TCGCAGCAATCGTGTTGTTCTTTATGTTCTTGTGAAGAAATGA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAACCGACAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGATGCACCGCCACCGATGGTGAAGTTGGGTTCCTA CGGTGGCGAGGTGAGGTTGGTGGTTCCTGGGGAGGAATCAGCTGCGGAAGAGACCATGCTACTCTGGGGTATTCAGCAGC CTACTCTCTCCAAACCAAACGCTTTTGTCTCTCAATCTTCTTTGCAACTTCGCCTTGACTCATGTGGCCACTCTCTCTCA ATTCTCCAATCTCCTTCCTCACTGGGTGCGCCTGGAGTAACTGGAGCAGTGATGTGGGACAGTGGAGTTGTATTGGGGAA GTTTTTAGAGCATTCTGTTGACTTAGGGACGCTTGTTCTTCAGGAAAAGAAGATTGTTGAATTGGGATCTGGTTGTGGAT TGGTTGGTTGCATTGCAGCTCTTTTGGGTGGTGAAGTCATTCTTACTGATCTGCTGGATAGGCTGAGGCTACTTAGAAAG AACATTGAAACCAATATGAAACACGTTTCTCTACGGGGTTCGGCGACAGCAACTGAACTCACTTGGGGAGAAGATCCTGA CCGAGAGCTCATTGATCCTACACCTGATTTCGTTGTAGGATCTGATGTTGTGTACAGTGAGAATGCTGTTGTGGATCTTG TAGAGACACTTGGGCAGCTCTCAGGGCCTAATACAACAATATTTTTGGCTGGGGAACTGCGAAATGATGCCATTCTTGAG TACTTCTTAGAAGCTGCAATGAATGATTTCACAATTGGCCGTGTGGATCAAACACTCTGGCATCCAGAATATCGCAGCAA TCGTGTTGTTCTTTATGTTCTTGTGAAGAAATGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0170900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENRQEEEEEEEEEEDAPPPMVKLGSYGGEVRLVVPGEESAAEETMLLWGIQQPTLSKPNAFVSQSSLQLRLDSCGHSLS ILQSPSSLGAPGVTGAVMWDSGVVLGKFLEHSVDLGTLVLQEKKIVELGSGCGLVGCIAALLGGEVILTDLLDRLRLLRK NIETNMKHVSLRGSATATELTWGEDPDRELIDPTPDFVVGSDVVYSENAVVDLVETLGQLSGPNTTIFLAGELRNDAILE YFLEAAMNDFTIGRVDQTLWHPEYRSNRVVLYVLVKK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	17	17	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	-	–
PANTHER	PTHR14614 View details on PTHR14614 Search for proteins/transripts with this domain View external data on PTHR14614	4	276	273	3.7E-129	–
PANTHER	PTHR14614:SF129 View details on PTHR14614:SF129 Search for proteins/transripts with this domain View external data on PTHR14614:SF129	4	276	273	3.7E-129	–
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	77	277	201	3.0E-47	–
Pfam	PF10294 View details on PF10294 Search for proteins/transripts with this domain View external data on PF10294	94	242	149	8.6E-34	IPR019410 Show description in modal box View details on IPR019410 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	110	238	129	7.58E-10	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0170900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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