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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0172300 |
Transcript ID | LotjaGi2g1v0172300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT5G56440.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0172300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58819581..58820823) extracted from Lotus japonicus Gifu genome v1.2.
TCTCGCTCAGCTTCTTTCTGGATGTCCACTTCTTGAGGATTTTAAAGCAAGTTTTTTATATTTTCATGAAGATGTCACTG ATACAGAGTTTAAAACATTACCAAAGTTGCTCAGAGCAGAACTTTCTGCGAGAACTGACAATTTTTTGCTGGGAGTGGTT AACAATGTCAAGGTTTTGCGCATCGATTGGGTATTTGATTTATGAATCATTATTTTTTATTCCTAACTGAGGTTGTCTAA ATGACTCATGATAAAGTTTTGGTTAAATAAACCATCATCCAATCATATTGGAGATAAGTGAGTTGGAATTTTTATATTTT ATTTATTAATTTATTTCCAGCTCATTTATCTTCAATGTGATTGGATGATGAGTTATTTAACCAAAACTTTATCATGTGTC ATTTTGACAACCTCTCCTCTGAAATGAGATATTTGATTTATTGCAATTGTAACTCATGCAGATTGAGCGCAGTCTTTGTA AAGGCATTTGCCCCTACGATTTCCCCATGTTTCACAATTTGGCCCATATTGAACTTGAATATAACAGTTATAATAATGAT TGGTCTGAGGTAGTGGAATTTCTCAAGTGTTGCCCCAAGCTTCAAGTTCTTATCATTAACCAGGTTTGGTTACAGGCTTA ATTAGAATGATTACTATTTGCCACTTCTTCATTTCATTTATTTATTTCTTTTGTTATCGTTGTTAACAGCCAAATATTCG TTTCTATGAGTCTTATCTACTTGAAGAACCAGCAAATTGGGAGTACCCACCATCTGTTCCTAAATGCATTCTATTACATC TTAAAAGATGTTGTCTCAATCATTATAGAGGCGCCGCATGTGAGTTTGAATTTGCAAGATATATTATGAAGAATGGAAGA TCTTTAGAGAGAATGACAATATACAGTGGCGCTGACGTAGATAAACAGGAACGGCTTAAGAAGTTAGAAAAATTATCCTC ATGCACAAGAAGCTCTGCAACGTGTAAACTTTCCTTCACATGATAACAAACAAGATTTGGTAGCTACAAGTAGTTTCCTA ATTTCTTCCTAGTAGCTAGGTTCTTCCAAGTAGTTGAATTTGTTCTTTATTGGTGGTTTATTGTAAATTTTAGATATAGT GCTGAAGTTGACGCAATTGTGTGTAGTATGATGTTTGAACATGCAAATTCCTTGCTCCAATGTTTTGTACCCAGCTCGAT TTGTTGGACTTTGTTCCACTTTTACAAAGTGTGAAATTTTGAT
CDS sequence (LotjaGi2g1v0172300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCACAATTTGGCCCATATTGAACTTGAATATAACAGTTATAATAATGATTGGTCTGAGGTAGTGGAATTTCTCAA GTGTTGCCCCAAGCTTCAAGTTCTTATCATTAACCAGCCAAATATTCGTTTCTATGAGTCTTATCTACTTGAAGAACCAG CAAATTGGGAGTACCCACCATCTGTTCCTAAATGCATTCTATTACATCTTAAAAGATGTTGTCTCAATCATTATAGAGGC GCCGCATGTGAGTTTGAATTTGCAAGATATATTATGAAGAATGGAAGATCTTTAGAGAGAATGACAATATACAGTGGCGC TGACGTAGATAAACAGGAACGGCTTAAGAAGTTAGAAAAATTATCCTCATGCACAAGAAGCTCTGCAACGTGTAAACTTT CCTTCACATGA
Protein sequence (LotjaGi2g1v0172300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHNLAHIELEYNSYNNDWSEVVEFLKCCPKLQVLIINQPNIRFYESYLLEEPANWEYPPSVPKCILLHLKRCCLNHYRG AACEFEFARYIMKNGRSLERMTIYSGADVDKQERLKKLEKLSSCTRSSATCKLSFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 133 | 133 | 1.0E-23 | – | |
PANTHER | 1 | 133 | 133 | 1.0E-23 | – | |
Pfam | 61 | 103 | 43 | 4.5E-14 | ||
SMART | 64 | 136 | 73 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0172300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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