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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0183300 |
| Transcript ID | LotjaGi2g1v0183300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DHHA1 domain protein; TAIR: AT1G53345.1 DHHA1 domain protein; Swiss-Prot: sp|Q5UPH8|YR106_MIMIV Uncharacterized protein R106; TrEMBL-Plants: tr|A0A151T3S0|A0A151T3S0_CAJCA Uncharacterized protein R106 family; Found in the gene: LotjaGi2g1v0183300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60697797..60701193) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTGGCTTTGAAACAACCTTTGGAACTTGTGCATGGGTTCCGTGTTCGGAAGCACTCGTCATGTTGTCACAACCCAC CCGAACCTACACTTCGCTGGTTACACAAGCCAAACTGCTCATCTCCAATGCCATGAAGATGAAGCTGAACACGAAGAACA GTTCACCTGCTATTCTGTACCACTATCCTTGTCCCGATGGCGTTTTTGCTGCTCTCGCCGCACACCTCTTCTTCAAAGCC ACTTCCTTATCCTCTCCTCTCTTCTTTCCCAACACTGTCTATCGCCCTCTCAGGTCATCATTCACTTCACTTCTTTTTCA ATCATGTTCTGTTCCATTTTCTACTATTTATGTCTCTAATTTGCATACCCTTTTCATTTTGCAGACCTGATGATCTTCCC CTCCATGAAATAAGCGATCTTTACCTGTTAGATTTTGTGGGGCCCCCTGGATTTGTTCAGGAAATTGCCACCAAGGTCCC AAGGTATTGTCTTTTCCACTTTTAGCATTCAGGGTGTTTGTTGTTATTACAGAATGGAGTTATCTTTTGTTTGTATCAAC TAAGGCTGTATTTTCTACTTTTCTTGTGTCTAGAGTGATTGTTTTGGACCATCACAAAACTGCGCTTGAGAGTTTAGGTA GTGAGAGTTCACTTGGTGAGAATGTGATTAAGGTCATTGACATGGAGAGGAGTGGGGCTACTATTGCTTTTGACTACTTC AAAGAGAAGCTTTTGAGTCCTGATGATGATGATGGTGTTGTGGTTAGCCAGCCTTCGGTGCTTGATGAATTTGAACGTGT CAGACAACTTTTTAAGTACATTGAAGATGGGGACCTTTGGAGGTGGAGGCTCCAGAAAAGCAAAGCTTTTAGCAGTGGTT TGAAGGATTTGAACATTGAATTCAATGCCCAGATAAACCCTTCTGTGTTTGACCAGGTAAATGTTGGAAATGGAATCCCT GCAGTCGAGAATCCCTACATTCGCGCATTCACTGAATCTGAGCCGTCCGACCAAGCAGGCTTAAATTTTAAGACATGCCT ACCATTCGATTTTAATGAAAACTTATGAGTGTACGGTCTAGATATCATGAATATGTGAATGTAGGTATCCCGAATTGCAG GTAACCCAGACCCGTAATTAGTATGCTTGCTATACTTCTTTCCGAATTTTCTGCTTTTTCTTTCTTTGAGTTTGTATTGT CTAATTTGTACATGTAAATTAGTAAGGATGAAAATGTTTTGCTCCCTTCTTTTCTGCTACAAATTTATCCATGAGTTAAT TGTTTTGATTCTATTATACTCTTAAATTGTAGACTCTTTAGCTATTGTTTTTATGGAATTTTGCATAAATTTCCCTTGCC TCAATCAATAGGAGTGATAGTTCTTTGTTTATTGCTAGCATAAGTGAAAGTAGGACAGGTTCCACGCATATGGAAGCCCT GTTTGACCTGTGATCATATAGGTGAAATCAAAGGAAATGTTATTGTAGATAATCGCCTTGGCATTATTTATGTGCTTTCT TCATTTAGATAATTGACATAACTATCATTTTTTTTCTGATTTATGGCAGTTGCTTTCATTGGACTTGGATTCTGTTATTA GTCAAGGCGTGGTAAGCATATCACACAAACAAAAATTAATTGATGATTGTCTTAGCAAGTCATATGAAATCGCCCTTGGA AATGGTGCATATGGTCATTGCCTGGTATGACCGATGTTTCGTTTGTTTTAATATCTTCTTAATTTAGAAGGAGAGGACAT ATCGAAATCTTGATGCTTTTAACTATTTGTACAGGCTGTTGATGCAGATACTGCTCTTTCACAGTTAAGGAGTGAATTGG GACATCAGTTAGCTACTAAAAGCCAGAAACTGAAGTTGAGGTTGGATCATTTTATGTTCTTGTCACATTTAGTTTACTTT CAAATAGTATATATCCTAGTAGTATTACAGTTCTCTGTCCATCTTCTATTTTTTTTCTTTCTTTCACATTTTTACATGAA AGATACACCTGATTAAGAGTAGTTGTGATTTGAGAGGTTAAGATAGTCGGGGTGGGTTTTACAGTTGGCACAAACTGTAT TCTTCTTGAAAGTACTTATCAATATATTCCAATTTGAGTATATTTTGGATCTTCTGGTTTGTGTTAGATGAGGAACTGTC TTTGATTTGGAAGAGACAGAAATTTTGACTCCAATAGTGTAGAGCAAGATTTACTAGTTGGTCAAGGTTGGAGGAGATTT TATATGTTGTTAAACTGAGCAACACTACCTGTTTCCCTACCATTCTTATGTTTAGCATCATAACTATTGATGTAGCCAAT GCTTATACAGTTTTATAACCTTCTCATTGTCCTCGACTGTACTGATCCTTTCTATGGTATAATTATAGGATAAAAGTAAT AGTGAGTTCTTTGGTTTTGGAGTGGAATTAGGAAGGGACAACCTTCCATTTCTTTATTCAGTTCTACTTCTATCAAACTG ATTTCGGGATTTTTATATGAGGAGCTCTGGAACTTAAACATGAAAATTCCAGTTGATTCTATTTTTAACTTAGTGATTGA AACATATTTTATAAGTCTATATATCTCATTACCCTGCATTGACCAAGAATCTATTTTCTCATTGACATCCCATCTTTTGT TATGGACTTATTTCTACATTTAGGGGTATTGGAGCTGTTGTATATAAAGTTCCCGAGCTTGAAAATGATCAGAAGCTAAA AATAAGTCTAAGGAGTGTGGACAATGAAGATACAACGCCCATCTCTCAGGTTGTTCCTTTATCAAGTGGCTAATTGCATT TGTTTGACTTATGTTGATGTGGGATATATTACTTGCATTTTGACTTGTACCTAATTTCTTTAATCTTCTATTAGGAATTT GGAGGTGGTGGACATCGAAACGCCAGCTCTTTCATGTTAATGTGTGAAGAATTTGAGCAATGGAAGGTGTGACTGGATGT CTTTTATTTAACATGAGGAGATGAAACAAGGCTTACACTTATCTTTTCTGTATGCTGGTCCAATTTGGACCAGTTACTTA CAAAGCCATGTGAATGTTTAGGTATCCCTCTCAATAACTGTATTATACAATTCTTTTAGCTATTTATTGTAGTTGTTAAT TTCGTTGTAATTCAAAATAATGTTAAGTCTCTTTACTCAACTGAAGATTTCTAATAATGTATGGTCTATTGGACTATTTC TGATGAAGCTCTTCAATGTGTAATCAGGGATTTAAGAGCACCTCTCAACACTAAAACTAAACTTTATTTTTGTATAAATA GAGGTGATTACAGCCTATATATTGCATAACATCTTATAAAGGAGAGTTGATTGACAAAAGAATTTTTAATCCAAAGCTAA AAGTTTCCTCAGTGCAGGAATGATTGTCATGATGTGA
CDS sequence (LotjaGi2g1v0183300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCACAACCCACCCGAACCTACACTTCGCTGGTTACACAAGCCAAACTGCTCATCTCCAATGCCATGAAGATGAA GCTGAACACGAAGAACAGTTCACCTGCTATTCTGTACCACTATCCTTGTCCCGATGGCGTTTTTGCTGCTCTCGCCGCAC ACCTCTTCTTCAAAGCCACTTCCTTATCCTCTCCTCTCTTCTTTCCCAACACTGTCTATCGCCCTCTCAGACCTGATGAT CTTCCCCTCCATGAAATAAGCGATCTTTACCTGTTAGATTTTGTGGGGCCCCCTGGATTTGTTCAGGAAATTGCCACCAA GGTCCCAAGAGTGATTGTTTTGGACCATCACAAAACTGCGCTTGAGAGTTTAGGTAGTGAGAGTTCACTTGGTGAGAATG TGATTAAGGTCATTGACATGGAGAGGAGTGGGGCTACTATTGCTTTTGACTACTTCAAAGAGAAGCTTTTGAGTCCTGAT GATGATGATGGTGTTGTGGTTAGCCAGCCTTCGGTGCTTGATGAATTTGAACGTGTCAGACAACTTTTTAAGTACATTGA AGATGGGGACCTTTGGAGGTGGAGGCTCCAGAAAAGCAAAGCTTTTAGCAGTGGTTTGAAGGATTTGAACATTGAATTCA ATGCCCAGATAAACCCTTCTGTGTTTGACCAGTTGCTTTCATTGGACTTGGATTCTGTTATTAGTCAAGGCGTGGTAAGC ATATCACACAAACAAAAATTAATTGATGATTGTCTTAGCAAGTCATATGAAATCGCCCTTGGAAATGGTGCATATGGTCA TTGCCTGGCTGTTGATGCAGATACTGCTCTTTCACAGTTAAGGAGTGAATTGGGACATCAGTTAGCTACTAAAAGCCAGA AACTGAAGTTGAGGGGTATTGGAGCTGTTGTATATAAAGTTCCCGAGCTTGAAAATGATCAGAAGCTAAAAATAAGTCTA AGGAGTGTGGACAATGAAGATACAACGCCCATCTCTCAGGAATTTGGAGGTGGTGGACATCGAAACGCCAGCTCTTTCAT GTTAATGTGTGAAGAATTTGAGCAATGGAAGGTGTGA
Protein sequence (LotjaGi2g1v0183300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSQPTRTYTSLVTQAKLLISNAMKMKLNTKNSSPAILYHYPCPDGVFAALAAHLFFKATSLSSPLFFPNTVYRPLRPDD LPLHEISDLYLLDFVGPPGFVQEIATKVPRVIVLDHHKTALESLGSESSLGENVIKVIDMERSGATIAFDYFKEKLLSPD DDDGVVVSQPSVLDEFERVRQLFKYIEDGDLWRWRLQKSKAFSSGLKDLNIEFNAQINPSVFDQLLSLDLDSVISQGVVS ISHKQKLIDDCLSKSYEIALGNGAYGHCLAVDADTALSQLRSELGHQLATKSQKLKLRGIGAVVYKVPELENDQKLKISL RSVDNEDTTPISQEFGGGGHRNASSFMLMCEEFEQWKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 358 | 329 | 6.0E-151 | – | |
| PANTHER | 30 | 358 | 329 | 6.0E-151 | – | |
| SUPERFAMILY | 30 | 155 | 126 | 4.06E-7 | ||
| Gene3D | 278 | 357 | 80 | 2.1E-8 | – | |
| SUPERFAMILY | 314 | 355 | 42 | 5.36E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0183300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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