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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0195400 |
| Transcript ID | LotjaGi2g1v0195400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Jasmonate zim-domain protein; TAIR: AT3G17860.1 jasmonate-zim-domain protein 3; Swiss-Prot: sp|Q9LVI4|TIF6B_ARATH Protein TIFY 6B; TrEMBL-Plants: tr|A0A151T314|A0A151T314_CAJCA Protein TIFY 6B; Found in the gene: LotjaGi2g1v0195400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62940220..62943494) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATTGATGGTGGTTAAATTTGCATCAGACTGAGTTTTTCTTGCTGTATTCCTTTGTCTCTATTTAGTCCACTTTGAG ATCCTTGCTTGATGAGCACATTTTTCTTAGTAGTTTAGATCAAGGTCAAGACCAACATCACTCTACTAGTCTACTGTTTC ACAGTTTGCAAAGCAATTAATACACTCTTTTTTATTTGGTTACTTATATCACACTAAAGAACTGAACTTCTTTTGATTTA GGTATCTATGTATGTCAATCATCTTTGTTTACTGATAGATTTTCTTTTACAATATTTTCATCACTCTTGAGGTTGATTTC GTGTTCCTTAATAATTTGCTGCAGTGATGGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCCCAGCCCTTCCTCAT CAATTCCTGTCTTTCAAGACCACTCAGGAAGAAAGGTCCAGAAACAGTTCTATTAGTGATCCTTTAGCTTCATCTGGATA TATGACCATCTCAACTAAAGATGCTTTTGACTCTAACCAGAAACCATTCTTACAGGTTTTTTTCTTCTGATCTAGCTTTT ACTTCAACAAAGGGTCTAGCTAGTCTTTTGAATGTTCTATCTTCTACCTTACAATTGTTAAAACTTAAAGTTAATTTTCA CTTATAAGATTTCCTAGTGGTTTATAAGTGTGACTGTCATATTTAAGTTTTTTGAAATTTTTTCTAACTGTGAATTTTTC TTCTTACTATTATGATATTTTGTAGAAAAACTTGTCCATAGGCAAACAAGCAGGGAACAACCATGGAATGACAGTTTATC CTCTGCAATGTTCTGATGTACAATCAGCTTGCCTTCAGGAACCAAGAAAATTTCCAGTTTCCAACCAATCTAAGCAAGTG AGTCCTGTTCTTCAATCTAATCTAGCTACTACTGGATTCAACATGGTCAACTCAGTAATAAAGCCACAACCTCTTGGTTC TAAATCCTCTGCCACACCTGTATCTGTTCTTCCACCAATTGGTTCCATTGTTGGCTCTACTGACTTAAGGTATCATAAAT TTTAAAACATAAAAATTGTAATTTCCTTTTTTACTGAAAATACTTGCTTAAGATATTCAAGCATGGTTTGAATGGCACAA CTGAGAATTTTGTTTGTTTCTAAAGGAATTGTTCCAAATCCTCTGGCACACCTGCTCAGCTAACCATTTTCTATGGTGGT TCAGTATGTGTGTTTGATGACATATCTCCTGAGAAGGTATTTCTTTGGAATACTTGCTTTAATTCTGTTAAAATTTCAAA TTAATCCCTTTGTTGTTTATATTAAATATTTTTATATTTCTCTTCTGATCAGGCCAAGGCTGTCATGTTAATGGCTGGAA ATGGATCTGCAGCAAATCAAACCTTGGCAGTTTCCAAAGCTAAATTGCAGACAGAAATCTCTGCTCCTTCCAAAAATGGT GGTTTCATTATAAGCCAACCCTTTCCCTCATCCTCACCACTACCAGGCCCTCTCCCAGTGACCTCTCATGCTAGTTCTCA GCCTGGGAGAGGATCTTCTGGCAACAATGAACTTCCAATGATAAGACCAGCTGGACCTTCAACTGCCCCTAATAACCATT CAAGATCTGCAGCTACAAAAATGATTCAACCAGGTACTTTTAGGCCTGGTCTCAATATTTTATAGAGAAACTGATAGAAA TATAATATAAAACCATTCACGTGTCTCCCCTCAACAGCTTAAGCTTTTGGGTAGTTGGTTCATGACATGGTATCAGAGCC TCTATGCCAAATGGTATGAAAGTTTGATCCTTGTTATCTCTAATTATTCTAACCAACATTTGAATTCAGCACATAGTAGA AGAATATGTGTATAGTCCACGCTTCAAACCCAATTTGCTTTTGCTCGAGAGAGCATGTTGAAGATAAATATAAAACCATT CATTTTCTTCACCTAACAGCTTAAACTTTTAGGACAACTAATCCATGACAGAAACACTAATAACACATTCTTTGGTGCTC TTTTCAACCTAGTATTTAGTGTTGACAAAACAATGTGTGTCTGCACAGGCTAGCATTTCTCTTTTCTTTGAAAGTTAGTA TCTTCTACTAGTTTATGTGAGACACAGTAATTAATACCAAAGTTTTGTTGTGTTTCCAGGAGGCTTGCCTCAGGCACGTA AAGCATCATTGGCTAGGTTTTTGGAGAAGCGAAAGGAAAGGTAATATTCTCATAAAATTTCTCTATCACTCATTTTTGAG TAAGGCATAGAAAGTTTACATGGGAAGTGTTTTCCTATGTTCTCCATTGAAGTTGTTTGGCCAATTTTGTTGGTGCCAGA GGATTGTTTTTAGCTGGAAATGCACACACATACACTAGGAATCATGTATTTGAACTTTTTTGAAGATTCTCTGTGTGTTT GGGTACCAGTTGAGTGCAATGTGAATGAACTTTTACTCAATTCATGACTTAATATCTTTTTTGTCTCGAATGAATGTTAA CGCCGTTTGTACTTATATCTAAGCATAAGCCTCTATAGCATGTACTCTATTCTTTTTGTCCTAGGCTAACACATTAGGAA TTTAGCATTATAGAGTTCAATATAATTCTCTTGTCTTGGAAGTTTCTGAGTCTGATGCATGCTTTTGTAATTACCAGGGT GATAAGCACATTGCCATACTTCAAGTGCAACAAGACATCACCTGAATGCAGCACTCCTGGATCAGACAGTGTTGGTTTCT CCATGGACTTCTCTGGATCATGTTCTCTACCTACCTCTAACTAGTCCTTAAGAAGAGGGTGTATGAAAGTTTAGATATAT GATTTTGTAAGGTCGATTCTTTTGATCAATGGCAGAGAAATTTCTTAGGCATTTAGTTCATAATATTTTCTTTTTGAGCT TTTCATAATAATTGTTACTTTTTTGCAGTATTTTACTTCAGATCTTGGATGTTGTCATATGATATTTTTAGCTTTCATCA TGTTTATAAATAATTATTTCTTTTTGTACAACAGTGAACACTCTTCAGATTCATTATTGCCGTGTAAGGCTGTTAGTGTT CAAATTATATTTAGACTTGTGTAATTGCAAGGCAGGGTTTGGTCAATGTTGAATATCTTTTCATCTGTTACATGTCTAAT TACATGGCCAATTAAAAACCTTGGCTTACTTAGTTTCTTCGTATTGGTGGAAATTTTTCTTATGCTTTGCATTCATTGCC CAGAGCATAGCAGAATATGATGTAACGCATAAGTATAAAAACTTTTTATACTGTTAGTGTATTTAGATTTTTTTT
CDS sequence (LotjaGi2g1v0195400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCCCAGCCCTTCCTCATCAATTCCTGTCTTTCAAGACCACTCA GGAAGAAAGGTCCAGAAACAGTTCTATTAGTGATCCTTTAGCTTCATCTGGATATATGACCATCTCAACTAAAGATGCTT TTGACTCTAACCAGAAACCATTCTTACAGAAAAACTTGTCCATAGGCAAACAAGCAGGGAACAACCATGGAATGACAGTT TATCCTCTGCAATGTTCTGATGTACAATCAGCTTGCCTTCAGGAACCAAGAAAATTTCCAGTTTCCAACCAATCTAAGCA AGTGAGTCCTGTTCTTCAATCTAATCTAGCTACTACTGGATTCAACATGGTCAACTCAGTAATAAAGCCACAACCTCTTG GTTCTAAATCCTCTGCCACACCTGTATCTGTTCTTCCACCAATTGGTTCCATTGTTGGCTCTACTGACTTAAGGAATTGT TCCAAATCCTCTGGCACACCTGCTCAGCTAACCATTTTCTATGGTGGTTCAGTATGTGTGTTTGATGACATATCTCCTGA GAAGGCCAAGGCTGTCATGTTAATGGCTGGAAATGGATCTGCAGCAAATCAAACCTTGGCAGTTTCCAAAGCTAAATTGC AGACAGAAATCTCTGCTCCTTCCAAAAATGGTGGTTTCATTATAAGCCAACCCTTTCCCTCATCCTCACCACTACCAGGC CCTCTCCCAGTGACCTCTCATGCTAGTTCTCAGCCTGGGAGAGGATCTTCTGGCAACAATGAACTTCCAATGATAAGACC AGCTGGACCTTCAACTGCCCCTAATAACCATTCAAGATCTGCAGCTACAAAAATGATTCAACCAGGAGGCTTGCCTCAGG CACGTAAAGCATCATTGGCTAGGTTTTTGGAGAAGCGAAAGGAAAGGGTGATAAGCACATTGCCATACTTCAAGTGCAAC AAGACATCACCTGAATGCAGCACTCCTGGATCAGACAGTGTTGGTTTCTCCATGGACTTCTCTGGATCATGTTCTCTACC TACCTCTAACTAG
Protein sequence (LotjaGi2g1v0195400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSGMQWSFSNKVPALPHQFLSFKTTQEERSRNSSISDPLASSGYMTISTKDAFDSNQKPFLQKNLSIGKQAGNNHGMTV YPLQCSDVQSACLQEPRKFPVSNQSKQVSPVLQSNLATTGFNMVNSVIKPQPLGSKSSATPVSVLPPIGSIVGSTDLRNC SKSSGTPAQLTIFYGGSVCVFDDISPEKAKAVMLMAGNGSAANQTLAVSKAKLQTEISAPSKNGGFIISQPFPSSSPLPG PLPVTSHASSQPGRGSSGNNELPMIRPAGPSTAPNNHSRSAATKMIQPGGLPQARKASLARFLEKRKERVISTLPYFKCN KTSPECSTPGSDSVGFSMDFSGSCSLPTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 338 | 337 | 1.3E-57 | – | |
| PANTHER | 2 | 338 | 337 | 1.3E-57 | ||
| SMART | 163 | 198 | 36 | 4.5E-18 | ||
| ProSiteProfiles | 163 | 198 | 36 | 17.711 | ||
| Pfam | 166 | 197 | 32 | 9.6E-19 | ||
| MobiDBLite | 237 | 279 | 43 | - | – | |
| MobiDBLite | 241 | 258 | 18 | - | – | |
| Pfam | 292 | 316 | 25 | 6.9E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0195400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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