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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0201700 |
Transcript ID | LotjaGi2g1v0201700.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein, putative; TAIR: AT4G05030.2 Copper transport protein family; Swiss-Prot: sp|Q9SSF0|HIP16_ARATH Heavy metal-associated isoprenylated plant protein 16; TrEMBL-Plants: tr|I1L487|I1L487_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0201700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64080054..64082005) extracted from Lotus japonicus Gifu genome v1.2.
CGGGTATCCACTGGGTCTAAGACCCATTGCCCATCCCTAGCTACTAGCTAACTCAGCTAATCCCTCGGCGTCGGTAAGCA TTAAGTGTTAATCATTTAATTTACTTTGCAAGTCAACACAAACATGCCTAAGACGCCACCATTTATATGTATATCTAAAC ATATATAGTTACAACAACAACAACTACTCACTCAATACCAAAACAAACGACAAATCGGTTTGAGTTTGCTTGATTCTGAT TGCAAAAGCATAAAGTAGCCTCTTGTTTCAATCATGAAGGTATGATCTTATGACCAATTAAATAGCTAGCTAATCATTTT GTTCTTTTCCTTTTAGCTTCCTAGCTTTCTTTTCTTGTTGATACATTTCTTACGAAGCTATTCTTAAAAATGGTCTTCAT CACAGCAAAAAGTAGTTATACAGTTGCAAATGGACTGTGACAAATGCAGAAACAAAGCCCTGAAAATTGCTGCAGAAGTC AAAGGTGAACTTTATCCCAACCCCTTTCATTTTAAGCTTCAAGAAATGTTAGTCTACACATGATGAAATCAAATTACTAA CTCAAATATTATGTTTGTATTGAAAACTGACATAGGAAAACAAAGGAAATCAGTTGATTCCTATTCTTTATCAAATTGGG TATTCAAAATTGGATTTGAAAAAGTTTAGGATAGATTTTAATGAACACGTCAAAGTTAATATTAAGTTTTAAATTCCGGT AATGAGTGTTTGCAAGCGTTCGCTATCCACAATATGATCACAATATAATTGTAACTGCAATTTAAAACCTCAGTAAAATC TCAATTGTAGGTTATTTGACCCATGCTTTGTCTTCAAACTTGCTCCATATATATACTTTAGATGATCACTGAAATCATGC AAAAATTATACTTGATGCATGTGGTAGTGGCTTCTTTGTTGTCATCTCACTTATGAGCAAAACCCACAGGCGTGACTGCA GTATCACTTGAAGGGGATGACAAAGATCGTGTGTCGGTGACCGGTGACAATGTGGACATGGTTTGCTTGGCCAACCAGCT GAAGAAGAAGTTCAGCTCTGTCATCATTCTGACTGTGGAAGATCTAAAGAAAAAGGAGGAACAAGAGAAGAAGAAAAAGG AGGAAGAGAAGAAAAAAAAGGAGGAAGAAGAGAAGAAGAAAAAAGAAAAAGAAGAGAAGTTGAAAAAGGCATTGTGTGCT GCTTTGGGTCATGGTAAGTGTGAGTGTGGTAATTGTTCCAAATGTTCTTCAGAAGAGCTCTGTGTGATCATCGATTGCTC AAAGTGCCAAAGTCCAAAGTGTAATGGTGATTGTAAGCCCTGCTCCAATTGCCACAACAAAAAGTGCCATGGTTGCAAGC CCTCTCCACCACCAAGCTATTATCCATATCCAACTTATAACCCTTATCCTCCAAATTGCCAGGTGGTTTATGATCCATGC CATTCTGATACTTGTTCCATCATGTGATTGTGAACCACTTGCAAATATCATGCCCGAATTTGCTACCATGGTTTAATAAG ATATATACTATTGTTGTTCCAGTCGTGGATAATAATTGTTGTAAAATCCACTTGTAAATCATGTTCTCCTTGGTTTTATG TAAATTCTCAAAGATGCTTTATTGTTTTCCTTCTTGTTGAGAGACATCATCAGTTTGTACTTTGTTGTATATCCTGCATC CACTTTCTGGTATTATTAATAAAAGAAATTCAGCTTGCAACCAAGCAAGCTTCACTGAATTACTTCTTTCAGTAGCCCTC AATGAAATTCCCACAAGTTGGCCTTAGCTTGTCATAGCGTGTTTGGTTTTGCTGTTGGGAGATCATAATCACTTCTCTTA AGAAAGTACAAAAATAATGAGTTTGTCCTGTTTTGGATTATATGTCCACTTCAATCCAAACATGCTATGACTGCAGAATT GATTTGTATTTCACTGACTTGTTATATTATTT
CDS sequence (LotjaGi2g1v0201700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAAAAGTAGTTATACAGTTGCAAATGGACTGTGACAAATGCAGAAACAAAGCCCTGAAAATTGCTGCAGAAGT CAAAGGCGTGACTGCAGTATCACTTGAAGGGGATGACAAAGATCGTGTGTCGGTGACCGGTGACAATGTGGACATGGTTT GCTTGGCCAACCAGCTGAAGAAGAAGTTCAGCTCTGTCATCATTCTGACTGTGGAAGATCTAAAGAAAAAGGAGGAACAA GAGAAGAAGAAAAAGGAGGAAGAGAAGAAAAAAAAGGAGGAAGAAGAGAAGAAGAAAAAAGAAAAAGAAGAGAAGTTGAA AAAGGCATTGTGTGCTGCTTTGGGTCATGGTAAGTGTGAGTGTGGTAATTGTTCCAAATGTTCTTCAGAAGAGCTCTGTG TGATCATCGATTGCTCAAAGTGCCAAAGTCCAAAGTGTAATGGTGATTGTAAGCCCTGCTCCAATTGCCACAACAAAAAG TGCCATGGTTGCAAGCCCTCTCCACCACCAAGCTATTATCCATATCCAACTTATAACCCTTATCCTCCAAATTGCCAGGT GGTTTATGATCCATGCCATTCTGATACTTGTTCCATCATGTGA
Protein sequence (LotjaGi2g1v0201700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQKVVIQLQMDCDKCRNKALKIAAEVKGVTAVSLEGDDKDRVSVTGDNVDMVCLANQLKKKFSSVIILTVEDLKKKEEQ EKKKKEEEKKKKEEEEKKKKEKEEKLKKALCAALGHGKCECGNCSKCSSEELCVIIDCSKCQSPKCNGDCKPCSNCHNKK CHGCKPSPPPSYYPYPTYNPYPPNCQVVYDPCHSDTCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 72 | 72 | 5.7E-24 | – | |
PANTHER | 1 | 131 | 131 | 1.6E-54 | – | |
PANTHER | 1 | 131 | 131 | 1.6E-54 | ||
Coils | 68 | 112 | 45 | - | – | |
MobiDBLite | 78 | 99 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0201700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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