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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0201900 |
Transcript ID | LotjaGi2g1v0201900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein, putative; TAIR: AT3G20180.3 Copper transport protein family; Swiss-Prot: sp|Q5PNZ7|HIP46_ARATH Heavy metal-associated isoprenylated plant protein 46; TrEMBL-Plants: tr|A0A151TET6|A0A151TET6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0201900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64097780..64099461) extracted from Lotus japonicus Gifu genome v1.2.
GTTACAACAACTGCTACTTACTCAATACAAAAACAAACGACAAATAATGGCTGAGTTTCCTTTATTCTGATTGCAAGAGC ATAAAGTTGCCTCTTGTTTCAAACATGAAGGTATGATCTAGTGACTAATTAAATATAGCTAGTTAATCATTTTGTTCTTT TCCTTTTTTCCTAGCTAGCTTTCTATTCTGGTCGATACATTTCCTAAGAAGCTATTCTTAAAAATGGTCTTCATCACAGC AAAATGTAGTTATACAGTTGCAAATGGACTGTGACAAATGCAGAAACAAAGCCATGAAAATTGCTGCAGAAGTCAAAGGT GAGCCTCATCCCAATCCCTTTAATTTTAAGCTTCAAGAAATGTTTTGTCTACACATGATTAAATCAAACTACTAACTGAA ATATTATGTTTTTATTAAAATCTGACATAGGAAATTAAAACAAAGGAAATCGGTTGGCTCCTATTGTTGTATAACAAATT GGGTATTCCAAATTGGATTTGAAAAAGTATAAGGGTAGATTTTAATCAACACATCAAAGTTAATATCATGGTTTTATATA TATTCCGGCCTGTAATTACAATTGCACCCGCAATGTAAAGGATTATTGAGTCCGCAACCGGTAGCTAACCACAATATGAC TGCAACCGCAATTTAAAACCTCGGCACAATCTCAAATTGTAGGTTATTTGAACCATGCTTTGTCTTCAAAATTCCTCCAT ATATGTACACTTTAGATAGTCACTGAAATCATGCAAAATTATACTTATGCATGTGGTAGTGGCTTCTTTGTAGTCATCTC ACTCATAATTAAGCAAAACCCACAGGCGTGACTGCAGTGTCACTTGAAGGGGATGACAAAGATCGTGTGTCGGTGACCGG TGACAATGTGGACATGGTTTGCTTAGCCAACCAGCTGAAGAAGAAGTTCCGCTCTGTCATCATTCTGACTGTGGAAGATC TGAAGAAAAAGGAGGAAGAAGAGAAGAAGAAAAAGGAGGAAGAGAAGAAAAAAAAGGAGGAAGAAGAGAAGAAGAAAAAA GAAGAAGAAGAGAAGAAGAAGAAGGCAATCTGTGCTGCTTTGTGTCATGGTAATTGTGGTAAATGTTCCAAGTATGAGAG TAGTTGCAAGTGTTCTTCAGAAGAGCTCTGTGTGATCATCGATTGCTCAAAGTGCCAAAATTCAAAGTGCGATGGTGATT GTAAGCCCTGCTCCAATTGCCACAACAACAAGTGCCATGGTTGCAAACCCTCTCCACCACCAAGCTATTATCCATATCCA ACTTATAACCCTTATCCTCCTAATTATTGCCATGTGGTTTATGATCCATGCCCTAATGAAACTTGTTCCATCATGTGATT GTGATCCTCTTGGAAATATCATGCCTGAATTTGCTACCATCTTTTGTATTACTCCCACCATCTTTTGTATTACTCCCCCG TTACGAAAATATAAGTTGTTTTAGCATTTGGACTATATATATTCCAAAATATAAGTTGTTTTGGAAACTAAAACATTTTA TTTCCTCTTTCTTCCTTATATACTCTCATTTAATATTATACTTCCCTCATTCCTTTTTAAGTGTCATTTTAGAAGAATTT TTTTGTTCCTATTTAACTGTCATTTTGATGTTTTAAATTTACAATTTGTTAATTATACCCTTACTTTTTCAATAAATTCA CT
CDS sequence (LotjaGi2g1v0201900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAAATGTAGTTATACAGTTGCAAATGGACTGTGACAAATGCAGAAACAAAGCCATGAAAATTGCTGCAGAAGT CAAAGGCGTGACTGCAGTGTCACTTGAAGGGGATGACAAAGATCGTGTGTCGGTGACCGGTGACAATGTGGACATGGTTT GCTTAGCCAACCAGCTGAAGAAGAAGTTCCGCTCTGTCATCATTCTGACTGTGGAAGATCTGAAGAAAAAGGAGGAAGAA GAGAAGAAGAAAAAGGAGGAAGAGAAGAAAAAAAAGGAGGAAGAAGAGAAGAAGAAAAAAGAAGAAGAAGAGAAGAAGAA GAAGGCAATCTGTGCTGCTTTGTGTCATGGTAATTGTGGTAAATGTTCCAAGTATGAGAGTAGTTGCAAGTGTTCTTCAG AAGAGCTCTGTGTGATCATCGATTGCTCAAAGTGCCAAAATTCAAAGTGCGATGGTGATTGTAAGCCCTGCTCCAATTGC CACAACAACAAGTGCCATGGTTGCAAACCCTCTCCACCACCAAGCTATTATCCATATCCAACTTATAACCCTTATCCTCC TAATTATTGCCATGTGGTTTATGATCCATGCCCTAATGAAACTTGTTCCATCATGTGA
Protein sequence (LotjaGi2g1v0201900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQNVVIQLQMDCDKCRNKAMKIAAEVKGVTAVSLEGDDKDRVSVTGDNVDMVCLANQLKKKFRSVIILTVEDLKKKEEE EKKKKEEEKKKKEEEEKKKKEEEEKKKKAICAALCHGNCGKCSKYESSCKCSSEELCVIIDCSKCQNSKCDGDCKPCSNC HNNKCHGCKPSPPPSYYPYPTYNPYPPNYCHVVYDPCPNETCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 132 | 132 | 6.9E-53 | – | |
Gene3D | 1 | 72 | 72 | 3.4E-24 | – | |
PANTHER | 1 | 132 | 132 | 6.9E-53 | ||
Coils | 68 | 112 | 45 | - | – | |
MobiDBLite | 78 | 99 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0201900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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