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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0201900 |
| Transcript ID | LotjaGi2g1v0201900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein, putative; TAIR: AT4G05030.1 Copper transport protein family; Swiss-Prot: sp|F4JDJ0|HIP47_ARATH Heavy metal-associated isoprenylated plant protein 47; TrEMBL-Plants: tr|A0A151TET6|A0A151TET6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0201900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64097908..64099410) extracted from Lotus japonicus Gifu genome v1.2.
TGAGTTTCCTTTATTCTGATTGCAAGAGCATAAAGTTGCCTCTTGTTTCAAACATGAAGGTATGATCTAGTGACTAATTA AATATAGCTAGTTAATCATTTTGTTCTTTTCCTTTTTTCCTAGCTAGCTTTCTATTCTGGTCGATACATTTCCTAAGAAG CTATTCTTAAAAATGGTCTTCATCACAGCAAAATGTAGTTATACAGTTGCAAATGGACTGTGACAAATGCAGAAACAAAG CCATGAAAATTGCTGCAGAAGTCAAAGGTGAGCCTCATCCCAATCCCTTTAATTTTAAGCTTCAAGAAATGTTTTGTCTA CACATGATTAAATCAAACTACTAACTGAAATATTATGTTTTTATTAAAATCTGACATAGGAAATTAAAACAAAGGAAATC GGTTGGCTCCTATTGTTGTATAACAAATTGGGTATTCCAAATTGGATTTGAAAAAGTATAAGGGTAGATTTTAATCAACA CATCAAAGTTAATATCATGGTTTTATATATATTCCGGCCTGTAATTACAATTGCACCCGCAATGTAAAGGATTATTGAGT CCGCAACCGGTAGCTAACCACAATATGACTGCAACCGCAATTTAAAACCTCGGCACAATCTCAAATTGTAGGTTATTTGA ACCATGCTTTGTCTTCAAAATTCCTCCATATATGTACACTTTAGATAGTCACTGAAATCATGCAAAATTATACTTATGCA TGTGGTAGTGGCTTCTTTGTAGTCATCTCACTCATAATTAAGCAAAACCCACAGGCGTGACTGCAGTGTCACTTGAAGGG GATGACAAAGATCGTGTGTCGGTGACCGGTGACAATGTGGACATGGTTTGCTTAGCCAACCAGCTGAAGAAGAAGTTCCG CTCTGTCATCATTCTGACTGTGGAAGATCTGAAGAAAAAGGAGGAAGAAGAGAAGAAGAAAAAGGAGGAAGAGAAGAAAA AAAAGGAGGAAGAAGAGAAGAAGAAAAAAGAAGAAGAAGAGAAGAAGAAGAAGGCAATCTGTGCTGCTTTGTGTCATGGT AATTGTGGTAAATGTTCCAAGTATGAGAGTAGTTGCAAGTGTTCTTCAGAAGAGCTCTGTGTGATCATCGATTGCTCAAA GTGCCAAAATTCAAAGTGCGATGGTGATTGTAAGCCCTGCTCCAATTGCCACAACAACAAGTGCCATGGTTGCAAACCCT CTCCACCACCAAGCTATTATCCATATCCAACTTATAACCCTTATCCTCCTAATTATTGCCATGTGGTTTATGATCCATGC CCTAATGAAACTTGTTCCATCATGTGATTGTGATCCTCTTGGAAATATCATGCCTGAATTTGCTACCATCTTTTGTATTA CTCCCACCATCTTTTGTATTACTCCCCCGTTACGAAAATATAAGTTGTTTTAGCATTTGGACTATATATATTCCAAAATA TAAGTTGTTTTGGAAACTAAAACATTTTATTTCCTCTTTCTTCCTTATATACTCTCATTTAAT
CDS sequence (LotjaGi2g1v0201900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGTGACAAATGCAGAAACAAAGCCATGAAAATTGCTGCAGAAGTCAAAGGCGTGACTGCAGTGTCACTTGAAGG GGATGACAAAGATCGTGTGTCGGTGACCGGTGACAATGTGGACATGGTTTGCTTAGCCAACCAGCTGAAGAAGAAGTTCC GCTCTGTCATCATTCTGACTGTGGAAGATCTGAAGAAAAAGGAGGAAGAAGAGAAGAAGAAAAAGGAGGAAGAGAAGAAA AAAAAGGAGGAAGAAGAGAAGAAGAAAAAAGAAGAAGAAGAGAAGAAGAAGAAGGCAATCTGTGCTGCTTTGTGTCATGG TAATTGTGGTAAATGTTCCAAGTATGAGAGTAGTTGCAAGTGTTCTTCAGAAGAGCTCTGTGTGATCATCGATTGCTCAA AGTGCCAAAATTCAAAGTGCGATGGTGATTGTAAGCCCTGCTCCAATTGCCACAACAACAAGTGCCATGGTTGCAAACCC TCTCCACCACCAAGCTATTATCCATATCCAACTTATAACCCTTATCCTCCTAATTATTGCCATGTGGTTTATGATCCATG CCCTAATGAAACTTGTTCCATCATGTGA
Protein sequence (LotjaGi2g1v0201900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCDKCRNKAMKIAAEVKGVTAVSLEGDDKDRVSVTGDNVDMVCLANQLKKKFRSVIILTVEDLKKKEEEEKKKKEEEKK KKEEEEKKKKEEEEKKKKAICAALCHGNCGKCSKYESSCKCSSEELCVIIDCSKCQNSKCDGDCKPCSNCHNNKCHGCKP SPPPSYYPYPTYNPYPPNYCHVVYDPCPNETCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 62 | 62 | 1.1E-19 | – | |
| PANTHER | 1 | 121 | 121 | 4.8E-48 | – | |
| PANTHER | 1 | 121 | 121 | 4.8E-48 | ||
| Coils | 58 | 102 | 45 | - | – | |
| MobiDBLite | 67 | 89 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0201900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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