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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0206200 |
| Transcript ID | LotjaGi2g1v0206200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 domain-containing family protein; TAIR: AT3G18370.1 C2 domain-containing protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|G7KN36|G7KN36_MEDTR Plant synaptotagmin; Found in the gene: LotjaGi2g1v0206200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64975828..64981628) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCCATTGCTTATGTAATTTGTTAGTATAAAATGTTACCTGTAGATATCTTTCTTTGTCAGATCTCTAAGTTGGTTGT GATCATGTGATTTTGGAACTCTTAATTACCAATTGAAAGCATGAGTGTTTAATTGAATAAAATAAGACCAGATCAGTGGT ATTTGAGCTTGAGCTCCCTATGCTTATATGTGTACAATTTTAATAAATATGTGTACTTTACTTCACATTCTGAGTTAATG GTTTTTGGTAGTTGCGTATGATATAAGCTGTTAGTGTGAGATACTGCTTTTTCTTTTTCAGTATGGGAGATATCAACGCA AGCTACTAGTGGAGGATTTGGATAAGAAATGGAAGCGAATCATACTGAATGTCTCGGTACATTCCTTATCTTTTCTCCCT TTACATTCCTAATGTGCTTTATGATGTTGACTTCAACTTTGTGTTCAAATAATATAGCCCATCACACCATTGGAGCACTG TGAGTGGCTTAATAAGTTGTTGACAGAAATCTGGTCCAACTATTTTAACCAGAAGCTCTCAAACAGGTTATCAGATATAG TTGAGGTGAAATTTCACAGACTTTCGCAGTTACTACATTGATTTTTTGTTTTGTTTTACATTTTCATTCCAATCTGAAAT TGGAATTTGGCTTCTATTTATTGTTGGACTGAAATAAATCACTTAGGTTATACTTCTTCGTTGTTTCCACTTCTTTTTTG CAACTTTCAAAATGTTTTTCCAAAAATAGGCATACAAAATTCGTCACTTACATTCATCTATTTCTTAATTATTTTACGTA CTTCCAAGGAAATTAATTAATAACCGAGGCAAATGACATAACAAGAAATTAGACGAAATTTTCAATAAAAATGAGAACAT TAGTTCTAATTCTTAATTTGTGTCAAGTTTAAGGAATAGAGGGAGTATTTTGATAGATGAACTAATTAAACTTTTCTTTC TTTTGTGTCTCTAGAAACGTTTAAAGCTCCGGAAACCAAGATTTCTAGTAAGTAACTCTTATTTTCTTCCTTGACAGAGT TGATAGTTTCAAATATTTGTTCGATGTGTAATGAACTAGAATCCTTCTGTAGGATAGAGTTGAGCTGCAGGGGTTTTCAC TTGGATCATGCCCTCCAAGCTTGGCTTTGCAAGGGATGCGGTGGTCAACTATCGGTGATCAGGTATTAGTTTTCTCCACA TTTCAAACATCACTAGTAAATAGATTTTCTAGATTTTTAATTAGGAAGATTCATTCTCCCCTTCATTTGTACTGTTTTTT ATGAGCAATACAGGAAACAGATTCCGGTCTAAATCTGCAATTTTTTTTTTGTTGCTTGATGTGATGTTAATACCAATACT ACAGCCACTATGAGCTTTGGCACTTCCACTATTTTTATTGCCTTTTTCTCTTCCACTGTCAAGGCTTCTTCTATTGTGTG ATCTTTATGTTGCTGACATCAGCAAGTGCACAGGAAAATTATATGCACAGTTTGAAAACTAAATTTCAATTTTATTTAGA AGTAAATTGTTAAAGATCATAATAATAGGAGTCTATGAATCTTCTTTACATCTCACTCAATGCCACCTAGGTAGTACATT TGACTTTCATATTTCTATTACGCCTGCCTCTATCCTTTTAGCATTGACATATTAACAAATATCTGAGGTTTTGATAAAGC ACTCTGATGGTATCTTACAGCGAGTCATGCAACTGGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGTTGCTTGCT AAGCTTGCGAAGCCATTGATTGGAACTGCTCGGATTGTGATCAACAGTCTTCATATCAAGGGTGATGTATGTAACACAAC TTTTTTTGTTCATTTTTTTAACATAAAAAAGCTTTATAAACTAGAAAGTAGGATATAATATGAGAACAAAGTTGGTTTGG TTTTTGAAGCTTACATATAATTATGACTTTCTTCTTTGAGAAGTATCAAACATGATAACCAGCTCACCACATTTTTTCTT TTAAACAATGTCTCCATTAGATTCTACTGTCATTGGGTCTCGGGCCAGTCCATTGCTTTTCATGCATTATTGCGAAACTG GTTTGGTGTTTTTCTTTATATTAATCTAATCATCTTTCATATTCATTTTTGCAGCTCCTTATTACACCGATTCTAGATGG AAAAGCACTCCTATATTCATTTGTATCAACACCTGAGGTGCGAGTAGGAATTGCCTTTGGAAGCGGTGGGAGCCAGTCAC TTCCTGCCACTGAGTGGCCTGGTGTTTCTTCTTGGCTGGTGGGTTCCCACTAAGTTTAATGTTATGTTTGTAGAAAAGTA ACCAAATTGCATTTGTTTGTGATGAGCGGCATAGCTATCTTACATTTATGGTACTGTTGGAAAAAGATACATACACTTTT GGCTCAGCTACAACTTTGGAAATCACATTATGCACTGCAGATATCTTGCTTATGCAGCGTTAACTGATTTCAGTCTGATA TTAAGATTTATTTCCAGATGCATATAGGTTCGGTATAAGGACAGTTCATATAACTCTATGTAAGAACAGAACATGAACTA GAAAATTCTTTGTATTTTCAGTTAATTTGATTTTTAGGAATTCATAATATAAAGGTAGTTTGACTCTCTATTTTCAGATG AAAAGAAGTCTCTCAGAATTTTGGCTAACTTTCTATTTATTTTTCCTGAGCACTTCCTATTTTTCATATTAATTGAAAGT TTACATATTATGCAGGAAAAACTTTTTGCTGACACCTTGGTTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCACTTT GCCTGCAGTTGATTTAAGGAAAAAGGCTGTTGGAGGAGTTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGA GTTCCTTCAAAGCACTGAGATATTCAGAAGACAATTTTGATGACAAGGACCTACAGACATTTGTAGAAGTAGAAATTGAG GAATTAACCAGAAGAACAGATGTCAGACTTGGTTCAACCCCTAGATGGGACGCACCGTTTAATATGGTTTTGCATGATAA TACAGGAACTCTTCGCTTCAATCTTTATGAGAGTCTTCCTAACAGTGTGAAGTGTGACTATCTAGCAAGCTGTGAAGTCA AGGTAAGGCCGTCAATGCTCTCCTTTGCAACCTTTCTTTTTTGGAAGTACTATGCTAAGATAATGTTATGTCTTTGCTCA GTTGAGGCATGTTGAAGACGATTCGACAATAATGTGGGCAGTTGGACCTGATTCTGGGGTCATAGCAAAGCAAGCTCTGT TTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGGGCCAACTCTGGAGAGGTACAGTATTTTATGATTATGTAA TAATTAGTCCCTCCTGCTTTTCTTGCTTGTAAATCATGATACACAGTTGACACTTTGGTTATCTTACCGTGGCATTATTT TATCCTCAACGAAGATAACATGGTTGTTCTTCATTCCTTATCTTAACAAGCAACTTGGTTAAAATATGATGAAGCATGAG TCTGAATATTATTGCATAACTTCAATATTTATTCTTGATGTATGTCAAAAGGAACATGCTCATATCCTGAATCATGTTCG TTGATTTCTGAAGCTGAAACATTGGATGATATAATTTGAAATGAGGTTATAGTTTCATATCAATTGTCTCTTTCTGGTTT GATGCTCTTAACTGCACTAGCACTCTTTCATTCTCTGCTTGTTGAGTTTGTTTGGTCAAAATTGTTCTTCGTTCTTTACT AAAAATCTAAAACTACATTTCAATATACCATAATTCTTATAATGGCATAGTTTTCTGTTTTTATCTTCTGACTTGTTTTT AATCTCTAGTCATGACTTGAAAGTTGAAAATGGATGCATGATTTACCTTTCTGAATGAAAAAAAATTAGTGTTGAATCTG ACATATTGACCATTTATTCATTCTACCTCTTGTCTTCATTTTATAGTTGAAGGTGAGCGTCGTAGTAAAAGAATGGCAAT TTTCTGATGGTTCACATACCATGAACAATCTCCGAGCTAGCTCTCAGCAGTCACTTAATGGATCATCAAATCTTCCATTA AGAACTGGACGGAAACTTTACGTAACTGTTGTGGAAGGCAAGGATCTTGCTGCAAAAGAAAAATCTGGAAAATTTGATCC ATACTTTAAATTGCAGTATGGAAAGGTGAGTGACACTGAGTGTGTGTGAGATTCTGACTGTACTAAGGTTGTGAATTGGA AATTATGCTTTATCTAATTCTAATTCTGGTTTAAATAATCTTTTCAGGTTGTCCAGAGGACAAAGACTTCTCATACTCCA AATCCTTCCTGGAATCAAATGTTTGAATTTGATGAGATTGGTGGCGGTGAATACTTAAAAGTTAAAGGCTTTAGTGAAGA AACTTTTGGAGATGAGAACATTGGCAGTGCACAAGTAAATTTGGAAGGGCTGGTTGATGGCTCGGCCAGGGACGTGTGGA TCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAGTAGAAGCAGTTAGGGTGGATGATCAAGAAGGATCAACG GTGCGTATTTGCAGTAGGAAATAAGTGGTTCTTTCAATCATTTAGCTACAAGATGTAAAATTGGATACGAAAGGCTAAGA CACATTGTATTTGCATATCATCACTTACGTTATTCATTGCTGATTTTAACCTCTTGGATATTCATTCTGACGCGCTTCAC ACCTTTGAAATGGCCAGGGTTCAGGTAATGGTTGGATAGAACTTGTTTTGATTGAAGGAAGGGATCTTGTTGCCGCCGAT CTCAGAGGCACGAGTGATCCATATGTGAGGGTACACTATGGAAACATAAAGAAAAAGACAAAGGTTGGAATACTTCATCC TTGAATCAAGTGATCCATATAACCGACGTAACTTTGTTGGAAAGACTTTTGTTATTGTCGTTGTTGTAAGCTAATTTACT TATTTTCTGAAGGGAACTCTCTAGACTTTTCATTATACCCATTTTTGTTCTTCACAATTACATATTTCCTGTACAACGCC ATGTTGTCATTGTTTCAATCTTGCAAAAGTCAAGTACTTAATTTTAAGTGTGGCTTTGTCTGGCAGATTATACATAAAAC ACTTAACCCTCAATGGAACCAGACCCTTGAGTTCCCTGATGATGGAAGTCCCCTGGTACTTTATGTCAAGGACCACAACG CGTTACTACCGACATCAAGTATAGGGGAATGCGTTGTAGAATATCAAAGGTTGCCCCCGAACCAGATGGCTGACAAGTGG ATACCTCTCCAGGGGGTGAAAAAGGGTGAGATTCACATCCAAATTACTAGAAAAGTTCCAGAGGTGCAGAAGAGGAAGAG TATAGACTCTGAACCTTCCTTGGGTAAATTACACCAAATTCCTAGCCAGGTGAGATCTTCATAGATGTTTCACAACACCT CTCTTTGTTATATCGTATGAAGTAATGATTATGTTAATTAATTGCAGTGCACATACTTTTTTTATTTGATGTTAATACCA TTCTCATTTTCATTTTGTGCTGTTGTTCTAACATGGTGCAAATTGAACTTTATCAGATAAAAGAGATGATGATCAAGTTC AGGTCATTAATAGAGGATGAAAATCTTGAAGGACTTTCTACAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGA AGGGTACATTGTCCAGTTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCAAAGAGATCATTAATT CTTCTCCTTCTCAGAGCAGAAGATCTTCTGAAAGCCCTTAG
CDS sequence (LotjaGi2g1v0206200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTGGTCAACTATCGGTGATCAGCGAGTCATGCAACTGGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGTT GCTTGCTAAGCTTGCGAAGCCATTGATTGGAACTGCTCGGATTGTGATCAACAGTCTTCATATCAAGGGTGATCTCCTTA TTACACCGATTCTAGATGGAAAAGCACTCCTATATTCATTTGTATCAACACCTGAGGTGCGAGTAGGAATTGCCTTTGGA AGCGGTGGGAGCCAGTCACTTCCTGCCACTGAGTGGCCTGGTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCTT GGTTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCACTTTGCCTGCAGTTGATTTAAGGAAAAAGGCTGTTGGAGGAG TTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTCCTTCAAAGCACTGAGATATTCAGAAGACAATTTT GATGACAAGGACCTACAGACATTTGTAGAAGTAGAAATTGAGGAATTAACCAGAAGAACAGATGTCAGACTTGGTTCAAC CCCTAGATGGGACGCACCGTTTAATATGGTTTTGCATGATAATACAGGAACTCTTCGCTTCAATCTTTATGAGAGTCTTC CTAACAGTGTGAAGTGTGACTATCTAGCAAGCTGTGAAGTCAAGTTGAGGCATGTTGAAGACGATTCGACAATAATGTGG GCAGTTGGACCTGATTCTGGGGTCATAGCAAAGCAAGCTCTGTTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGA GGGGGCCAACTCTGGAGAGTTGAAGGTGAGCGTCGTAGTAAAAGAATGGCAATTTTCTGATGGTTCACATACCATGAACA ATCTCCGAGCTAGCTCTCAGCAGTCACTTAATGGATCATCAAATCTTCCATTAAGAACTGGACGGAAACTTTACGTAACT GTTGTGGAAGGCAAGGATCTTGCTGCAAAAGAAAAATCTGGAAAATTTGATCCATACTTTAAATTGCAGTATGGAAAGGT TGTCCAGAGGACAAAGACTTCTCATACTCCAAATCCTTCCTGGAATCAAATGTTTGAATTTGATGAGATTGGTGGCGGTG AATACTTAAAAGTTAAAGGCTTTAGTGAAGAAACTTTTGGAGATGAGAACATTGGCAGTGCACAAGTAAATTTGGAAGGG CTGGTTGATGGCTCGGCCAGGGACGTGTGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAGTAGAAGC AGTTAGGGTGGATGATCAAGAAGGATCAACGGGCCAGGGTTCAGGTAATGGTTGGATAGAACTTGTTTTGATTGAAGGAA GGGATCTTGTTGCCGCCGATCTCAGAGGCACGAGTGATCCATATGTGAGGGTACACTATGGAAACATAAAGAAAAAGACA AAGATTATACATAAAACACTTAACCCTCAATGGAACCAGACCCTTGAGTTCCCTGATGATGGAAGTCCCCTGGTACTTTA TGTCAAGGACCACAACGCGTTACTACCGACATCAAGTATAGGGGAATGCGTTGTAGAATATCAAAGGTTGCCCCCGAACC AGATGGCTGACAAGTGGATACCTCTCCAGGGGGTGAAAAAGGGTGAGATTCACATCCAAATTACTAGAAAAGTTCCAGAG GTGCAGAAGAGGAAGAGTATAGACTCTGAACCTTCCTTGGGTAAATTACACCAAATTCCTAGCCAGATAAAAGAGATGAT GATCAAGTTCAGGTCATTAATAGAGGATGAAAATCTTGAAGGACTTTCTACAACATTGAGTGAGCTAGAAACTCTAGAGG ATACACAGGAAGGGTACATTGTCCAGTTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCAAAGAG ATCATTAATTCTTCTCCTTCTCAGAGCAGAAGATCTTCTGAAAGCCCTTAG
Protein sequence (LotjaGi2g1v0206200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRWSTIGDQRVMQLGFDWDTNEMSILLLAKLAKPLIGTARIVINSLHIKGDLLITPILDGKALLYSFVSTPEVRVGIAFG SGGSQSLPATEWPGVSSWLEKLFADTLVKTMVEPRRRCFTLPAVDLRKKAVGGVIYIRVISANKLSRSSFKALRYSEDNF DDKDLQTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYESLPNSVKCDYLASCEVKLRHVEDDSTIMW AVGPDSGVIAKQALFCGDEIEMVVPFEGANSGELKVSVVVKEWQFSDGSHTMNNLRASSQQSLNGSSNLPLRTGRKLYVT VVEGKDLAAKEKSGKFDPYFKLQYGKVVQRTKTSHTPNPSWNQMFEFDEIGGGEYLKVKGFSEETFGDENIGSAQVNLEG LVDGSARDVWIPLERVRSGELRLQVEAVRVDDQEGSTGQGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNIKKKT KIIHKTLNPQWNQTLEFPDDGSPLVLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKKGEIHIQITRKVPE VQKRKSIDSEPSLGKLHQIPSQIKEMMIKFRSLIEDENLEGLSTTLSELETLEDTQEGYIVQLETEQMLLLSKIKELGKE IINSSPSQSRRSSESP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 650 | 650 | 0.0 | – | |
| PANTHER | 1 | 650 | 650 | 0.0 | – | |
| Gene3D | 132 | 278 | 147 | 9.2E-7 | ||
| SUPERFAMILY | 133 | 238 | 106 | 6.85E-7 | – | |
| SMART | 134 | 241 | 108 | 2.2E-5 | ||
| Pfam | 135 | 234 | 100 | 9.0E-5 | ||
| Gene3D | 301 | 430 | 130 | 6.4E-23 | ||
| SUPERFAMILY | 314 | 427 | 114 | 6.99E-22 | – | |
| Pfam | 316 | 413 | 98 | 5.2E-17 | ||
| SMART | 316 | 410 | 95 | 8.4E-13 | ||
| ProSiteProfiles | 316 | 395 | 80 | 11.078 | ||
| ProSiteProfiles | 431 | 524 | 94 | 13.357 | ||
| Gene3D | 437 | 557 | 121 | 6.2E-30 | ||
| SUPERFAMILY | 441 | 555 | 115 | 1.4E-27 | – | |
| SMART | 445 | 539 | 95 | 4.7E-15 | ||
| Pfam | 446 | 542 | 97 | 1.3E-18 | ||
| CDD | 446 | 542 | 97 | 1.38005E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0206200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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