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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0222800 |
| Transcript ID | LotjaGi2g1v0222800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lachrymatory-factor synthase; TAIR: AT2G25770.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|P59082|LFS_ALLCE Lachrymatory-factor synthase; TrEMBL-Plants: tr|I3S2K0|I3S2K0_MEDTR Polyketide cyclase/dehydrase and lipid transporter; Found in the gene: LotjaGi2g1v0222800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67877173..67878392) extracted from Lotus japonicus Gifu genome v1.2.
AGACAATTGAGATCATGTCATTATATGATGTCCTAATTCCTGTCCCACCAATAAAATTATGTCATATCAAGTAAAATATA ATTCATGTAAGGTTATAAATGTCATAATCATATTTTTTAATTGAGATGATGAAATTTCATTGCTTGAGACATGATTAATA AGGGTGCCAGAATTCTCCTTATATATAAGATTACTTTCACAAGAAAAATACATACTTTCATCAGTTCAGTTCATCCTCAC TTGTGCTTCAGTAGTATCATTAATTACTTCATCACTTACACTTCTCATTATGCAAATGGAGTCTACTCATCAACAAGAAA GCCAATCAGCAGAACCAAAATGGAAGGGGAAGGCGAAAGCAGAGGTAACAAGGTTCAAAGCAGAGCAAGCATGGCCTCTT CTAGAGGATTTTTTTGGCCTCAGCAAGCTCTTCCCCACTCTCTCCACATGCCTTCCTGTTGAAGGCCTCTCAGGCCAACC AGGTTGTGTTCGTTTCTGTGCAGGTTTCAAGACCCCTGTGGATGATGGCCATGGCAAAAAAGCCATGAACTGGACCAAGC AGAAACTGCTTTCAATCGACCCGGTTCAGAGGATTTTCAGCTATGCCATTATAGATGGAAATGTTGGGTTCCACTCCTAT GTTTCCACAGTGAAGGTGCTGCCAAAGGAAGGTGGGTGTGAAATTGAGTGGTTTTATGAAGTTGAACCGGTTAAAGGGTG GAAATTGGAGTATCTTGATTCCTTCATTGGCAAAGGGTTGCAGGTGATGGCTCAGAGAATTGAAGAGGCTTTGAAGACCA TGGAAGAAGCACTTGGAGCAAATAATTGAAGTAATGAGTGGTGATCACCAACATTTATCTACACTATAGCTTTTTCAGAT ATGTTATGTATAATGTACTTCTTGAATCTGTGTCATTAGTTTGTCATTGCTTAGTAGTATAAACTGAATGTGCACTAATG CTGTTTTGTGTTGTTGCAATAAAATAAGCTGGTTTTCAATTGTGTTTCTGTCTAGACATGTATATGCTACACAGTGGAAC TCTTATTCTTCATCCATAAGCTCTCTCAATTATCATAGATTAAAATCATGTTTGAAGTGGAATGTTGTGTGTATCTCTTA GATAAATATTCAGAGGTTCCATATATTTAATGGATCAATATCCTCTCAAATTACTCTCTTAAGTTTCTTCAAGTTGAAAT TATATGTGGATCTTTCTCTT
CDS sequence (LotjaGi2g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATGGAGTCTACTCATCAACAAGAAAGCCAATCAGCAGAACCAAAATGGAAGGGGAAGGCGAAAGCAGAGGTAAC AAGGTTCAAAGCAGAGCAAGCATGGCCTCTTCTAGAGGATTTTTTTGGCCTCAGCAAGCTCTTCCCCACTCTCTCCACAT GCCTTCCTGTTGAAGGCCTCTCAGGCCAACCAGGTTGTGTTCGTTTCTGTGCAGGTTTCAAGACCCCTGTGGATGATGGC CATGGCAAAAAAGCCATGAACTGGACCAAGCAGAAACTGCTTTCAATCGACCCGGTTCAGAGGATTTTCAGCTATGCCAT TATAGATGGAAATGTTGGGTTCCACTCCTATGTTTCCACAGTGAAGGTGCTGCCAAAGGAAGGTGGGTGTGAAATTGAGT GGTTTTATGAAGTTGAACCGGTTAAAGGGTGGAAATTGGAGTATCTTGATTCCTTCATTGGCAAAGGGTTGCAGGTGATG GCTCAGAGAATTGAAGAGGCTTTGAAGACCATGGAAGAAGCACTTGGAGCAAATAATTGA
Protein sequence (LotjaGi2g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMESTHQQESQSAEPKWKGKAKAEVTRFKAEQAWPLLEDFFGLSKLFPTLSTCLPVEGLSGQPGCVRFCAGFKTPVDDG HGKKAMNWTKQKLLSIDPVQRIFSYAIIDGNVGFHSYVSTVKVLPKEGGCEIEWFYEVEPVKGWKLEYLDSFIGKGLQVM AQRIEEALKTMEEALGANN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 177 | 169 | 3.5E-42 | ||
| PANTHER | 10 | 174 | 165 | 3.4E-85 | – | |
| PANTHER | 10 | 174 | 165 | 3.4E-85 | – | |
| Pfam | 24 | 165 | 142 | 6.3E-19 | ||
| SUPERFAMILY | 29 | 168 | 140 | 6.29E-22 | – | |
| CDD | 31 | 165 | 135 | 2.64223E-25 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0222800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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