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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0223000 |
Transcript ID | LotjaGi2g1v0223000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT1G52140.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|Q9V4C8|HCF_DROME Host cell factor; TrEMBL-Plants: tr|A0A1J7HT97|A0A1J7HT97_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0223000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67899823..67901012) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCCCAAAGCAGAACAAAACATATCTCATTTCAATCTCTCTCTCTCTCTCTCTCTCCATCTCATTGAAGACACAAAAC AAAAAAACTCATCTTCTTGAATTCATCAAACAATGGAACCTCAGACAAGCCAACCTGTGGTTGCAAAGAAGGCACAAAAC ATAATCCGCATAATTCTGTTCATGTTGAAAGAAGGCATAGCCAAGAGCAAACTCATGCTAGACTTGCACTTACTCCTCAA ACGTGGCAAGCTCGCTGCTGCCAAGGCCATAGCCAACACCCTCACCCTCCACCACCACCGCCGCCACCAGCACTCCTCTG TCTCTCCCCAAGACTATGAATTCAGCTGCAGCAACAGCCCTGCCATAATGTTCCCCATCATCAAACGCCATAACAAAAAA TACCACCACAGCCGCCGCCACAACCACCACTATGAGGACATTTCCACCGTCCATGCGGTTCAAAAGATGCTTGAGATGCT CAACAATAGTGACAAGGTTGAGGCTTCTCCACTTGTAGCATTACCCGGGTTTGGAAAAAGTCCCATTGGAATTAAGCAAC TCAGAATCACTGACTCACCATTTCCACTTAAAGATGAAGAAGGTGATCATAACAACCAAGTGGATTTGGCAGCTGAGGAA TTTATCAAGAGGTTCTATAAGGATCTCAACTTGCAACAGAAAATGGCTGCTATTGAATCACCTTACCATAGAAAATTCTG GGACAGATGATAAATGTTTGGGGAATTGGGGTCCTTTTTTTTAACTAGCACCTTGTATATGTTCTGTTTCCCCTGCTTGA TCAATTGAAAAAGTCACATGATTGATCTGATTTAGTTGCAAAGGACATTAATTTTGTGACTTTGTTGCTTTGATGTAGCA GGGTTTTTTTCTTGTATCACACAGTTCAAGGATGGAAAGGTGCTGTTGCTTATAATTATTGCCACTTCCTCATAGTGTTT TCCAGTTATGACTGTAATTTTGGAGTTTCTTACAACTCTGTTTTCTGTATATATATTGCATTCCCATTTTCTTATGTTAT GTAAATCTCATCCATTACTGTTATGTAAATGTAAAATTGTGTTTAACTAGCAGTAGACTGGTATTAAAGAACCAAGTGGG TTTGGTTCGGTGTGTGAATTCGCGTAGTGGTTTAGCACTTCATTCATTAGACAAATGATTTGATTTTCAA
CDS sequence (LotjaGi2g1v0223000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTCAGACAAGCCAACCTGTGGTTGCAAAGAAGGCACAAAACATAATCCGCATAATTCTGTTCATGTTGAAAGA AGGCATAGCCAAGAGCAAACTCATGCTAGACTTGCACTTACTCCTCAAACGTGGCAAGCTCGCTGCTGCCAAGGCCATAG CCAACACCCTCACCCTCCACCACCACCGCCGCCACCAGCACTCCTCTGTCTCTCCCCAAGACTATGAATTCAGCTGCAGC AACAGCCCTGCCATAATGTTCCCCATCATCAAACGCCATAACAAAAAATACCACCACAGCCGCCGCCACAACCACCACTA TGAGGACATTTCCACCGTCCATGCGGTTCAAAAGATGCTTGAGATGCTCAACAATAGTGACAAGGTTGAGGCTTCTCCAC TTGTAGCATTACCCGGGTTTGGAAAAAGTCCCATTGGAATTAAGCAACTCAGAATCACTGACTCACCATTTCCACTTAAA GATGAAGAAGGTGATCATAACAACCAAGTGGATTTGGCAGCTGAGGAATTTATCAAGAGGTTCTATAAGGATCTCAACTT GCAACAGAAAATGGCTGCTATTGAATCACCTTACCATAGAAAATTCTGGGACAGATGA
Protein sequence (LotjaGi2g1v0223000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPQTSQPVVAKKAQNIIRIILFMLKEGIAKSKLMLDLHLLLKRGKLAAAKAIANTLTLHHHRRHQHSSVSPQDYEFSCS NSPAIMFPIIKRHNKKYHHSRRHNHHYEDISTVHAVQKMLEMLNNSDKVEASPLVALPGFGKSPIGIKQLRITDSPFPLK DEEGDHNNQVDLAAEEFIKRFYKDLNLQQKMAAIESPYHRKFWDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 201 | 201 | 9.1E-78 | – | |
PANTHER | 1 | 201 | 201 | 9.1E-78 | – | |
Pfam | 168 | 189 | 22 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0223000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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