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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0226900 |
| Transcript ID | LotjaGi2g1v0226900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxidative stress 3, putative isoform 1; TAIR: AT5G56550.1 oxidative stress 3; Swiss-Prot: sp|Q9P0V3|SH3B4_HUMAN SH3 domain-binding protein 4; TrEMBL-Plants: tr|A0A0S3TCQ7|A0A0S3TCQ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0226900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68394293..68396607) extracted from Lotus japonicus Gifu genome v1.2.
CTATAGATAAAGTGACCAATCATAAAAAGAATTAAATTTGTCAATGTTATCCAATTCTCCAATCCATAGTCATCTTATAT AAGACCCATTATTCTATTCTATCTGCAGAATAAAACTGATTCATACTTTTCAAACAGATATATACAATTTATCTCTCAGT GAAGGCATGTTCCATTTGCTATAAGCAGAGAAAGCAAGTTCTTCTGTGTCCTTCATTTCCCTTTGTTCAACAAGTCTCAG CAAACCTTTCTAGAAATGATGAAAGAAATAATGGACTGTAATAATGAAACTAGAAACATCAACTGGGTGGCTAAAGAAGA TGGTGAAGATAGCAGTTATTCAACATCAATTGGACTCATCTCAGAAGATTCAATGAACTCTGCGTGCTCTTCTTCGTCAG AGTTGACTGAGGATGCTTCCTCTTCAACATCATCTTTTCTATCAACCTCTTCTGCATCATCACATTCAAATGGATCTTTG TATGACCTTTCAGAGCTCATGAACCATCTCCCTATAAAGTAAGCAATTTCCTCCTTCCTTTCTGAATTTTATTCAATTTC CTTTGTTACTAACTTACTATACCATCATGATACAAGTTAAGATTGTTTACAAATATCCCTTCTTTAATTTAGATTTCACC AAAAATGTTGAGAAGTTCTACGATAACTATAGATATAGATATGGCCAAAATAGTCCTTATACGGGGAGAGCAATTCTGTC CTCTTAACTAGCTAGCTTTTCTGTTAGAGTGAGGCTTAACCTGAATTCTAAGAAAAAGAGTTTTATAGCACCAAATTGAT TTAAAAAAATCCCTTCTTTTGTGATCAATGTTTATAATTTGGAAGGGTTTTGCATTGTTATTAAAAAGTTGTTGTATTGA TTAGTTTATGTTATGAACTGTGCAGGAGAGGGTTGTCTATGTTCTATCAAGGAAAGGCCCAGTCTTTCACTTCATTAGCA AGGGTGCAGAGTATAGAGGATCTTCCTAAGAAATTCATGTCTTGCAGAAATAGAATGAAGTCATGCAAAAGTTATGGGGG AGACTTGGATAGCCACAGAATATTGCTCTCTCCAAAGGCTACAATATCAAAGAAGGCTTCAAAAGGGTCTTCTGTTACAT CTGTGCTGAACAAAAGAGGGAGTTTCCTTGGAGGGTCTAGGCCTTCTATTTCTGTCAACAAGAACTTCTGAAATCAAGCC AGTGATTAGAGCTACTTTGCTGATTTTGTGTACAAAAATCCGGAAAATTTTGAATCTCATTCCTTCAGCTTGCTGAGAGT CTAAGCCATATTAGAAATTTTCTATATTATGTTCATTTTCAATATGTTTTTTCAGGCTGACATGATCTGTGCCTGTTAGA GTTATTACATCTATGACTCAAGGATTGTTAATTAGGCATGTGCCAATAACAATTGAGATGTAGGGTTAAAAATGAAATTT GTGAAGGATTTATTTGGAAAATTAGTTCTGTGTAGGATCACGATTGGCCTGGATATGTAAGAGGGATTTGAAGTGCTTTT TTGGATGCTTGAAGTTTCAAATTCAGATTTTATCAATTAATAGAACTTGAATCCATGTTTGGTTGAAGCAAAAATAGACA AACAAAAATAAGATTGAAAATGAAGATATATATGAATCTCTTTTGAATACCAAGGCTTCATCTGAGCATATAACTTCAAA TTTTTTTTTTTTTGTAAAAACTAAAAAGTAGAGCTTAACTACGATCGTGATTTTTTCACTTCTTACTTTGATTAAATTTG ACTTATACACCATTTTCTTATCTCCTTTTCTTTTATAGGCAAAGGTTAGTTGTTAGTTTTTTTTTTATAGGCAAAGAAAT GCATTATTGGGTGTGAAAGGGGTACTCAACTCATAATACAAAGAAAAAAGTAAAAAAATGAGAAAAAAAAATACCCCAAA CACAAAAAGAGACCCATACTCCTCAGCAGAAACGCGTATTGCAAATGCTCCCATCCAAGCTGCACCCACCACAATAATCA ATCCTACAGGCTACCAATCCTCACACCAATTACATGAAAGAAACTTCCACTAACCAAACCCAATTCAATAACAAACAAAC GAAAAGCAAGAATCAGTCGTCATCACCTAATATAACCTCTGATAAGAAAGCACCCCACAAAACCTCCCTACAGAAGCCAA AAGAGAGAAAAACAGCAACATTGCATTGAACTACAAGCCTCCCAAACACAAAATTGGGTTCGTAGAACACTCAAACAATG GGTAAGAAAACCCACTCATATTTTATTTATTCCAATGCCATGACCTCCACTTGAACTGAAGAAAAATCATACACA
CDS sequence (LotjaGi2g1v0226900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAAGAAATAATGGACTGTAATAATGAAACTAGAAACATCAACTGGGTGGCTAAAGAAGATGGTGAAGATAGCAG TTATTCAACATCAATTGGACTCATCTCAGAAGATTCAATGAACTCTGCGTGCTCTTCTTCGTCAGAGTTGACTGAGGATG CTTCCTCTTCAACATCATCTTTTCTATCAACCTCTTCTGCATCATCACATTCAAATGGATCTTTGTATGACCTTTCAGAG CTCATGAACCATCTCCCTATAAAGAGAGGGTTGTCTATGTTCTATCAAGGAAAGGCCCAGTCTTTCACTTCATTAGCAAG GGTGCAGAGTATAGAGGATCTTCCTAAGAAATTCATGTCTTGCAGAAATAGAATGAAGTCATGCAAAAGTTATGGGGGAG ACTTGGATAGCCACAGAATATTGCTCTCTCCAAAGGCTACAATATCAAAGAAGGCTTCAAAAGGGTCTTCTGTTACATCT GTGCTGAACAAAAGAGGGAGTTTCCTTGGAGGGTCTAGGCCTTCTATTTCTGTCAACAAGAACTTCTGA
Protein sequence (LotjaGi2g1v0226900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKEIMDCNNETRNINWVAKEDGEDSSYSTSIGLISEDSMNSACSSSSELTEDASSSTSSFLSTSSASSHSNGSLYDLSE LMNHLPIKRGLSMFYQGKAQSFTSLARVQSIEDLPKKFMSCRNRMKSCKSYGGDLDSHRILLSPKATISKKASKGSSVTS VLNKRGSFLGGSRPSISVNKNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 169 | 160 | 8.1E-53 | – | |
| PANTHER | 10 | 169 | 160 | 8.1E-53 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0226900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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