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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0227400 |
| Transcript ID | LotjaGi2g1v0227400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1005 family protein; TAIR: AT4G29310.1 DUF1005 family protein (DUF1005); Swiss-Prot: sp|Q8UEN6|SYV_AGRFC Valine--tRNA ligase; TrEMBL-Plants: tr|I1J4G3|I1J4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0227400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68424483..68428231) extracted from Lotus japonicus Gifu genome v1.2.
AATCCCTTCGCGAGCGGGATTCAGATCCTCTCATATAGAAATTCTCTGGTATTAACATGAGAGAATTTCCACGTGAGAGA GATTGGAATCCTTACAGCTAAGAGAGAGAACCCTACTAGTACTATAAATTGCACTGTCCCCATCGAAACGCAACACACAC TCACTCCATCATGACCATGCACCATTTTCGTGTTCTTCTTCTTCTTCTTCACTAGTTTTCCCGCTACAAGGAAAAAGAAA ATCCACACCATTTTCGTGTTCTTCTCCACTGTGAAATTGAAGTTGATCGATTCAATGGATCCATGTCCCTTTGTGCGTCT CACGGTGGAGTCTCTGGCTTTGAAGCTTCCGGTAGCAACCAAACCGGCACCGGTTTCCGGCGTTCACCCTTCAACCACCC CTTGCTTCTGCAAGATTCGGTTCCATGTTTTCCCCTCTCAAACCGCCCTACTCCCCCTCTGCTCCTCCGATTCCCCCTCG CCGGAAACCACCACTTCCGCCGCCGGCTTCCACCTCGGCCCCGCCGCGCTCAAGCGACTCTCCGGGAAGCCGGTCGCTCT TCGCGTCTCGGTTTACTCCGGTAGCATGGGCCGCACCTGCGGCGTTTCTGGTGCTAAGCTGCTCGGTCGCGTCACCGTCA GCGTTGACCTCGCCGGAGCTATGTCTCGCCCCGCCACGTTCCACGGCGGGTGGCAAAGGCTTGGGAAGAAGCAGCGTGAA CCGGAGCATAAGCCTTCGGCTCGGCTTCACTTGGTTGTCCGGACTGAACCGGACCCCCGATTTGTGTTTCAGTTCGGCGG CGAGCCGGAGTGCAGCCCGGTGGTTTTTCAGATTCAGGAGAATATCCGACAACCTGTTTTCAGCTGCAAGTTCAGTGCTG ATCGGAACTGCAGATCCCGGTGAGTGACTCACTGAACTTTTCTTCGTTACTAGTATTATCTGGTGCATTTTAGTTTTCTT TCATTGTCTCTGCTATTGTGATCCATGTTGGTTAATCAACTAGAAAGATATTACAATTGCATTATTCTGCCAACATGTTT AAGAGTTTAATTTTCATATTCAATTGAATTGCTGAATATTAGCCTTAAATCAAGTTTTTTTCAATCCAATCTATTTACAA ATTTTTCGTTGAAAATTGTCAACTTTTAGCATTTACTCACTTAAAAGTGTTAATGGGATTCATTTTATAAAATAACTTTT AAATTCTACTAGTTGACATGAATTCAGTTTCGAAAACTCTTTTTTTATTTATTTAAATGAAGGGGTAGCCCTCGAGTTTC GTAAATTTTAATTCACACAAACGGAATTGTAAGTTAGATCATATTCATCATTGTTCATCATTTTTGTAGACTTTCATTTA ATTAGATTAACCACAGCGAAATGTCGCCCGAGATGAACCATGTCTATTCAGATGTTTCGCCGTGATTCATCTAATTAAAT GGTGCTATTGTATTAAAAAAAGCTATTGCCAAGGAAATGCTTTTGACAATAAGAAAACTTAGTTGAGAAGTTCAAATGTT TTAATGGATGCAAAATTGGTTAGCTTAAACATTTGACTATTAGTAGGAAAGGAAAAAACTAAAGAGATGATCCTCTTTTA ATTCTATAGACATATGTAATATATGAATCAATGGACAAAAGTCAATAAAATGTAAGTACTAATAATAAGTAGAAAAGTTT TGATCTGCAAAAATTATTGATAGTTGGAATATTCTGGTAGGTTAACTAGAGTTATGAGTTAAGGTGAGGTTTAGGCATGT GAGCTGGCTTGTCCATATCTTTAGTGTTGGTACCTAACTATCCATCCGCTGCACATGCTTAGTCGGGTCTCACCATATCC AGCTCAATTCCTTTTCATGTTTCTCTCGTGGCTTAGTTGTTATCCCTTTCTGCTCAATTCATTTGGTGGAAATCATCCCC TCCATTTGTTTCTTTCCTTTTCTTGTGAGACAATCATGGAAAATGGCAGTGGTACCATGAAAATTTCATTTTCAATAGCT GGCATTTCCACTTTTGGAAACATATCCTTGGCACTACAATTTGACATTCCTAAAACATTTACAATTACACAAATACTGTA CCAGTTTGGCAGTTTCAGAATTCTCATTCATGTCCCTGATTTTTAGTAAAGCCCCTGTTTTTTATCATGGTAAATGTAGA CTAGTCACATAACTGACATAAGTATACTAGTTAAGCAAGGTCTCGGCTTGAGTACTCTTGTGGATAAAAAAACTTGCTAG GAGAGTTAGCCGCCTAGCCCCACCAAAATGTAGATGTTTCCAAATAGCACTTGCTCGCTGTTAGTCGTTAGCTGGATCTA AGATGAATTAGATGCTAGGCTGGTTTTCTTTGCAAGCAAAGAAATGTGATTCAATTTTAAAATTGAACTTTGGGTCATCA AGTTGTTGAGTTAATTAGACCTTAAAAAATAGATAGGTTCACTACTAAATTATCATGTTGCAGCATAAATGGGATTTCAT TAGCTGCATACCCAGGTTTGGTCAAACAGACAGGTTGAGATTTTCCAAACTGTTAAACATAACTGCCCTTGATTCCCTCC CATGTGCCAGTACCTGGCTGCACCCTCAATATCTCTCAAATAATTTATTACCTAAAACCCTTGACATTTTCATTAGTATA TTACATGTTAGTTGTTACATTTAATTAATGAATGTTTATATAATATATGTTTCTTAGTTTAATCATACCTGTTGTTCATG ATTCAGGTCTCTCCCCTCAGATTTTACCAACAAGCCAAGTAGATGGAGAAGAACATTGAAAAGTGTTAGAGATCGTCATG GGAGGGAGAGAAAGGGTTGGATGATAATGATTCATGATCTCTCTGGCTCCCCTGTTGCTGCAGCCTCCATGATCACCCCC TTTGTCCCTTCCCCTGGCTCAGATCGAGTCTCAAGATCAAACCCAGGCGCGTGGCTCATCCTGCGCCCCAACGGCGCCTC CGTGAGCAGCTGGAAGCCGTGGGGGCGCCTCGAGGCTTGGCGCGAAAGAGGCTCCGAGGATGGCTTAGGCTACAAGTTTG CGCTCGTGACTGAGAACGGACCTGTGAGCGGAATTCCCATTGCTGAGGGCACATTGAATGTGAAAAAGGGTGGCCAATTC TGCATTGACTATAAGGTGATGAAGGATCATGGATTGAGTGCAAGGTTACCAGGGAAAGGGTTTGTGATGGGTTCTACTGT GGAGGGTGAAGGGAAAATGAGTAAACCGGTTGTGCAAGTTGGGGCACAGCATGTGACATGTATGGCTGATGCTGCTCTCT TCATTGCTCTTTCAGCTGCCATTGATCTTAGCATGGATGCTTGCCAGCTTTTCTCACAGAAACTCAGGAAGGAGCTTTAC CATCATGAAGAACATGTTTCCTAATCCTTTTCATGATTAGCCATGCTTGAAGCCGATTGAATCTGGTTTTTGTTTTTGAT TTACCTTTTACCATATATGCTGCAGTGATAGCCAATGTTTTCCTATTCAATGCATAGTGATTAGTGAGAGCATTGGTTTG AGCAGAGGTATATGCATACCTACATACAAAAACTCTTAGGAAGTTTATTAGAGTTGCTAGTTTTGATGGTTTTGTTTTCA AGCTGGGATTTTTCAACAGCAGAAATTAGGGGAGTGATGATTTTAACTGCATTTTTTTGGTACTGAACTGAACATTTGAA CTGTACAAACAACCCACAGGCAAATGTAAAATTTATTTATAAATGCAAATTTCTGTTTGTTATTTTTTG
CDS sequence (LotjaGi2g1v0227400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCATGTCCCTTTGTGCGTCTCACGGTGGAGTCTCTGGCTTTGAAGCTTCCGGTAGCAACCAAACCGGCACCGGT TTCCGGCGTTCACCCTTCAACCACCCCTTGCTTCTGCAAGATTCGGTTCCATGTTTTCCCCTCTCAAACCGCCCTACTCC CCCTCTGCTCCTCCGATTCCCCCTCGCCGGAAACCACCACTTCCGCCGCCGGCTTCCACCTCGGCCCCGCCGCGCTCAAG CGACTCTCCGGGAAGCCGGTCGCTCTTCGCGTCTCGGTTTACTCCGGTAGCATGGGCCGCACCTGCGGCGTTTCTGGTGC TAAGCTGCTCGGTCGCGTCACCGTCAGCGTTGACCTCGCCGGAGCTATGTCTCGCCCCGCCACGTTCCACGGCGGGTGGC AAAGGCTTGGGAAGAAGCAGCGTGAACCGGAGCATAAGCCTTCGGCTCGGCTTCACTTGGTTGTCCGGACTGAACCGGAC CCCCGATTTGTGTTTCAGTTCGGCGGCGAGCCGGAGTGCAGCCCGGTGGTTTTTCAGATTCAGGAGAATATCCGACAACC TGTTTTCAGCTGCAAGTTCAGTGCTGATCGGAACTGCAGATCCCGGTCTCTCCCCTCAGATTTTACCAACAAGCCAAGTA GATGGAGAAGAACATTGAAAAGTGTTAGAGATCGTCATGGGAGGGAGAGAAAGGGTTGGATGATAATGATTCATGATCTC TCTGGCTCCCCTGTTGCTGCAGCCTCCATGATCACCCCCTTTGTCCCTTCCCCTGGCTCAGATCGAGTCTCAAGATCAAA CCCAGGCGCGTGGCTCATCCTGCGCCCCAACGGCGCCTCCGTGAGCAGCTGGAAGCCGTGGGGGCGCCTCGAGGCTTGGC GCGAAAGAGGCTCCGAGGATGGCTTAGGCTACAAGTTTGCGCTCGTGACTGAGAACGGACCTGTGAGCGGAATTCCCATT GCTGAGGGCACATTGAATGTGAAAAAGGGTGGCCAATTCTGCATTGACTATAAGGTGATGAAGGATCATGGATTGAGTGC AAGGTTACCAGGGAAAGGGTTTGTGATGGGTTCTACTGTGGAGGGTGAAGGGAAAATGAGTAAACCGGTTGTGCAAGTTG GGGCACAGCATGTGACATGTATGGCTGATGCTGCTCTCTTCATTGCTCTTTCAGCTGCCATTGATCTTAGCATGGATGCT TGCCAGCTTTTCTCACAGAAACTCAGGAAGGAGCTTTACCATCATGAAGAACATGTTTCCTAA
Protein sequence (LotjaGi2g1v0227400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPCPFVRLTVESLALKLPVATKPAPVSGVHPSTTPCFCKIRFHVFPSQTALLPLCSSDSPSPETTTSAAGFHLGPAALK RLSGKPVALRVSVYSGSMGRTCGVSGAKLLGRVTVSVDLAGAMSRPATFHGGWQRLGKKQREPEHKPSARLHLVVRTEPD PRFVFQFGGEPECSPVVFQIQENIRQPVFSCKFSADRNCRSRSLPSDFTNKPSRWRRTLKSVRDRHGRERKGWMIMIHDL SGSPVAAASMITPFVPSPGSDRVSRSNPGAWLILRPNGASVSSWKPWGRLEAWRERGSEDGLGYKFALVTENGPVSGIPI AEGTLNVKKGGQFCIDYKVMKDHGLSARLPGKGFVMGSTVEGEGKMSKPVVQVGAQHVTCMADAALFIALSAAIDLSMDA CQLFSQKLRKELYHHEEHVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 417 | 417 | 5.0E-211 | – | |
| PANTHER | 1 | 417 | 417 | 5.0E-211 | ||
| Pfam | 1 | 412 | 412 | 1.3E-160 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0227400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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