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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0229500 |
| Transcript ID | LotjaGi2g1v0229500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isopentenyl-diphosphate delta-isomerase; TAIR: AT5G55610.1 isopentenyl-diphosphate delta-isomerase; Swiss-Prot: sp|Q8TQQ0|COFH1_METAC FO synthase subunit 2 1; TrEMBL-Plants: tr|A0A151UA85|A0A151UA85_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0229500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68808363..68811163) extracted from Lotus japonicus Gifu genome v1.2.
CAACTGCCAACACATTTGTTAACTGTTATTTGTCTCTTCTACCTCAATATTTCAAAGCTCCTTCATTTTCTTGCGTTAGT GTTCCCTTTTTTTGTGTCTCAAACCCTCACAACAACAAGGTATCCTTATATTTCTTTGATGTGTTTACATGATTCAGCTC TCATTGTTATTCATTTGTACTTCAATGATGTAAGATCATTTTAATGCAACATGTGATTTAACCACTTGTGATTATTGTTG CTTTAATTTGAAAGGTCCAACAATGGGAGGAATAACATTACTTCTAGATCTGTGGAGGAAAAATCAAAGCTTTAACACAA CACAAACATATCAATCTTCTTGGTTTGTTTCTACATCTGCCACTGTTGCCTCATTTGCTGCCGGAACCTCTTTGGCCTCA AGGGACTTCTTTGGGTACGATCCTTTAGTCTTTTCCCTACATAGTTTTGTCTAAATGAGTAATAAATATCAAGATATTAC AATAATCATTAATTTGGTTTACATGGTTTTAAAAACAACTATTTTGTTGAATAATTTGTACTGGATTGTAAAATATACTT AAAAGTTCTAATCCTTTCTCACACTCATTTAGTCAGCTCTTTTGTTTTCTCAGCCATACTTTAGCCACACTTTATAGTGA AGTGGACAAGTGGTCATTTTGGGGGAGGGGGTAATTCTTAGCTTTTTATGTATCTTGTGATTACATGGTTATATAGTAGA ATTGCAGACAAATGTGGATTATCTCAACAGCAATTGTAATCGTGATGTCATTACGAAAATTTGAAAATATTTTATGTTGT GGCTGCAATTGCAATTGCAGACTGCATTTTTAAACACTAATTTTGAGGATTCATGGACATGGTAGTGTAATAATTTTGCA AACTCAGCAAATCATGCATTGTTGCCTTATTTTTTCCCCCAAATTATATTGACATTCTTGACACAACACCAGTTTCAGGA CACCAGTTGCTTATTGTGATGCTGGAGCGGCAATTGCTGAAGACTACATTCCTAGCATGCCAAGTGTACCAACTGGAAAA TATTTTTATCATGATTCTCTAAAATATAGTAGTACAAAGAGCTACAACATTGAACTAAAACCACTATTATCTGTTTTTGA ATTGAACTCACTTTCACTTATTACATTGAGGTCATTCTTGATGTTCTATTTGCCTCTTTTGGAGCCACATGCAAAGATGG AGCAAGATGATGATGACTTTATACAGGACAATGAAGACGAGCTTCGTCTCAATCTGGCCGGTCCCTTCAGAAAGTCACTG ATTCAAATCATCCGTGAGGTGAGCCATTGATTCCAATTCTGGGGAGAAGCTTCTATGAGTAGTTTTCAGGATGACATACT TGATTCTGAGGAAATATAAGCTGATCCAAGCATGTTATTATTTTATATGGAGTCTTAAATTTTTCATTTTTCTATTTTTA TCTAACTGCTCAAATGTTAGCTGATAAGTTGATTTGTTTCTAATTTATAAAAGGTTACAGTTGTGACAACTAGGCGCATT TTAGAAAGAGTAACTGTCCATTATGTTTCAAGAAGAATGGCATGGAAGCTACTCAAAGGTACACTCTTTCCCCCAAATGG TTTCTTATACAAACATCAAATACTATGATATTTTGGTGTCAATTTTGTATTTATACAAATCTTTTATGCATAATGCATTC AATTTGCGTGATATCTTGAAACAGATGTTACTAAATCAGCTGCTCGCAAAGCTGGAAGGAGAATGCCTACTTTAGTTTAC TTCTTTTCTGTGAGCAAAGCAACTTTCAGAGGTAAAAGCAACGAATCAATCGTATGTTTTTTGCAAGGATGGTTGAGATG GATTGAGATCATATGTTTTCTAATGGTGTCTCATTTTCTGTCTCAATAAATGAAATTATGACATGTCAATTAAAACATAC ACAGATATGACATTTATAATATTACATATATAGTTACTTTTAATTGACATGGCACAATCTCCTTGGTGGAATAAGGAATG AGAGACTATTTAGGAACAGAGGATCTTGATACAATTGAGACTTTGGCATAACCTATATTGTGCTAATGTTGGTCCACAGG GCACATGCTTGGAGTTACAGCATCATGGGTTGTCCAAGTAGGCATCAGATTATGTCAATTCTTCACATCCATGTCAAAGA ATGATGTAGGTGATATGAACAAAGATGAGAGAACAAGACTTCTTAGGCAGAAGATTTTCATAGCAACAGTTAGGTGCCAT GCATCTCTGATTTTTGCTTCTATTGGGGGAGGGATTGAGGCTACCCTTTTTCGCCCCGCGACCGGCCAGTGGATTGGTAA GATTACGAACACTGCATGCTAACATTGAGCTCGTTTGGTATGGATCAAATAGAACTTATTGGAGTTTCTCTAATAAAAAA AAATGCATTAGATAAGTTTCGATAAGTGTTTTTTGGTCCCAATCCAAACAAGCTTATACATCACATTGCTTTTGTTGAGT CTTGCAAAGATAATTGAATTTTAATTTTTTTTATGGTTTTCCATTTTTGAATTGCTTGTTTTTCAGGTTGTGCTATTGGT TATTTGTCTGGTCCAGTTATTGTGGCAGTTTGTGCTGACAAAATTTTTCACTTGAACTTTTAGTATTATTTGTTTATGCA TGTTTTCTTCCAAATATACATAAAGGAAAATTGTTGCATTTTTATGCTGTTTCCGGTTAACGACAATTTGTCTCAAGGTG CTTAATCGTTATCAGAACTGTAACCACAATTTAAAACATCAACTAATTTCTAGAACTTCATTTAGAACTTGGAGATACCA C
CDS sequence (LotjaGi2g1v0229500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGAATAACATTACTTCTAGATCTGTGGAGGAAAAATCAAAGCTTTAACACAACACAAACATATCAATCTTCTTG GTTTGTTTCTACATCTGCCACTGTTGCCTCATTTGCTGCCGGAACCTCTTTGGCCTCAAGGGACTTCTTTGGTTTCAGGA CACCAGTTGCTTATTGTGATGCTGGAGCGGCAATTGCTGAAGACTACATTCCTAGCATGCCAAGTGTACCAACTGGAAAA TATTTTTATCATGATTCTCTAAAATATAGTAGTACAAAGAGCTACAACATTGAACTAAAACCACTATTATCTGTTTTTGA ATTGAACTCACTTTCACTTATTACATTGAGGTCATTCTTGATGTTCTATTTGCCTCTTTTGGAGCCACATGCAAAGATGG AGCAAGATGATGATGACTTTATACAGGACAATGAAGACGAGCTTCGTCTCAATCTGGCCGGTCCCTTCAGAAAGTCACTG ATTCAAATCATCCGTGAGGTTACAGTTGTGACAACTAGGCGCATTTTAGAAAGAGTAACTGTCCATTATGTTTCAAGAAG AATGGCATGGAAGCTACTCAAAGATGTTACTAAATCAGCTGCTCGCAAAGCTGGAAGGAGAATGCCTACTTTAGTTTACT TCTTTTCTGTGAGCAAAGCAACTTTCAGAGGGCACATGCTTGGAGTTACAGCATCATGGGTTGTCCAAGTAGGCATCAGA TTATGTCAATTCTTCACATCCATGTCAAAGAATGATGTAGGTGATATGAACAAAGATGAGAGAACAAGACTTCTTAGGCA GAAGATTTTCATAGCAACAGTTAGGTGCCATGCATCTCTGATTTTTGCTTCTATTGGGGGAGGGATTGAGGCTACCCTTT TTCGCCCCGCGACCGGCCAGTGGATTGGTTGTGCTATTGGTTATTTGTCTGGTCCAGTTATTGTGGCAGTTTGTGCTGAC AAAATTTTTCACTTGAACTTTTAG
Protein sequence (LotjaGi2g1v0229500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGITLLLDLWRKNQSFNTTQTYQSSWFVSTSATVASFAAGTSLASRDFFGFRTPVAYCDAGAAIAEDYIPSMPSVPTGK YFYHDSLKYSSTKSYNIELKPLLSVFELNSLSLITLRSFLMFYLPLLEPHAKMEQDDDDFIQDNEDELRLNLAGPFRKSL IQIIREVTVVTTRRILERVTVHYVSRRMAWKLLKDVTKSAARKAGRRMPTLVYFFSVSKATFRGHMLGVTASWVVQVGIR LCQFFTSMSKNDVGDMNKDERTRLLRQKIFIATVRCHASLIFASIGGGIEATLFRPATGQWIGCAIGYLSGPVIVAVCAD KIFHLNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 324 | 324 | 9.3E-127 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0229500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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