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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0234600 |
| Transcript ID | LotjaGi2g1v0234600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q68W59|DER_RICTY GTPase Der; TrEMBL-Plants: tr|A0A0B2R7K0|A0A0B2R7K0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0234600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69396810..69398904) extracted from Lotus japonicus Gifu genome v1.2.
AGATAAGCCAAAAGGCATTAAATAGAGTGCACATGGTATGTATAAGTATGACAATGCAATTTGTTGTAATTGGAATATTG GATCCCACAAGCACAGGGACAGGCGAGGCCATCTCCTTAAAGTAGTAGAACACTTGAATCTTCCAAGCTTCCAAAAGTGC ATGCAGAAAGTGATCCAAAACTAAGACCATTTACAATGGTTTGTTTAGTTTACTTACTCTCAACACCACTTTTTCTCTTC TCAACACTCCACATCATTTTCTCTTTTCAATTCAACACTCATTCAACTTTTACTCACTCCAATGATTTTTCATTCAACAC CAACACCCTACCCCACCACTTTTTTATTTCGTATTTTTATTTAATTTTATATTTTTGTTTTTATGATTTACATAAAATTA CAATTATCGATTTAAATTAAATTAAAACAATAAACACTTAACAATTTTTTTTTTTTAAATATAGACAATAATTTATTTTA TTTCCTTAACTTATTTTATTTTATTGTTGGGATCCATTTCAAAACAAAGACTACCTCAGGGGGATCCATTTCAAAACTGG TGGAGAATTTATACCCAACCTGAAACTTTGCTTGCTCAAGTTTTCAAAGGGGTGTACTTTGCGCAAGGTGATCTATTGGG GGCCAAACGTGGCTATCGTCCAAGCTATGCTTGGTCTAGTATCTTGCAGTCCAGCTGAATTTTTCAGGAGGGTGGTCGGT GGAAAATTGGTGATGGTAGTCAGGTTGATATTCTTCATGATCAGTGGCTACCTCAGGGGGTACCTGTTATAGGCAGTCAA GATTTAATGGCTGAATTTGGAGTGTCCAAGGTCTCTCATTTAATTGATCATGCAACCAAATCTTGGAAGTATGCTTTGGT GGATTTTATTTTTCACCCAGCCACTGTATCTCATATTTTAAAAATTCCTTTGCCTTTGAATGGTAGTGTTGATACTCTCA TGTGGCCAGAAACTGTTGATGGCAATTATTGTTCCAAATCTGGTTATATTTTTGTTCGCAGGAAGCTCCTTGGTGCTTGT TCGTCAACCTCTTCCAGCTCCTTTGTGGAAGAAGTTTTGGCGTACTAGTGCCCAGCCCCGTTGCAAGGAGGTGGCGTGGC GTGTGGTTTCATCTTTACTACCAGTCCGTGCAGCGCTTCGTCGGAGAGGCATGGATGTTGCCCTTTGTGCCCGGTGTGTG CTAATGAGGAGGAGACCGTGTTTCACTTGTTCGTGTCTTGTCCTATGACCCAGAATTTCTGGTTTGGCTCTCCCCTTTCC CTTTGTGTGCACGGATTTAGCTCCATGGAGGACTTCTTGGCGGACTTTTTCCGAGCAGCTGATGATGATGCACTCTCACT ATGGCAGGCTGGAGTGTACGCTCTTTGGGAGATGCGCAACCGTGTGGTTTTCCGAAATTGTGAGATTCTTGTGCCCGTAG CAGCCGTGATCCAGCGATGTTCCATGCTAGCTGCTGCGCCGGTGTCAGAGGTGACGGTGGTGCCTAGACCAGCCCCGTTG TTGCAGGCAACTTGGGCCCGACCACCTTATGGTATCTACAAGCTGAATTTTGATGCAGTTGTGGCTACCACGGGAGAGGT GGGTTTTGGTTTGATTGTGAGGAATATGTTGGGTGAGGTCCTTGCTTCTGCAGCACAATATCTTCTCCATGCAGCTTCAG CGATTCTTGGGGAGGCTTTAGCCTTTCGCTGGTCTATGCAGCTTACCATTCAGATGGGGTTTCGTTGGGTTCTTTTTGAG ACAGATTGTTTGCAGCTGTTACAGCTTTGGAAGAAACCTCCAGATGGTCGATCGTATTTATCTAGTATTGTTGGTGATTG CTTTATGTTATCTCGTTATTTTAATTATGTTGACTCGTCTTTTGTTCGCTGTGGGGGCAATTCTGTTGCTGATTTCTTAG CTGGTACCGCTTCCAAGTATACTGATATGGTTTGGTTGGAAGAGGTACCTAGGGAGGTCATAACTTTGGTTCATAAGGAT GTAATGGCTTCTATGCCTGCTTTTGATTAATGAATTTCCAGTTTCCTTTCAAAAAAAAAATGAAAAGGCTAATAGAAAGT AATAAAAATAGTGAA
CDS sequence (LotjaGi2g1v0234600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCAGAATTTCTGGTTTGGCTCTCCCCTTTCCCTTTGTGTGCACGGATTTAGCTCCATGGAGGACTTCTTGGCGGA CTTTTTCCGAGCAGCTGATGATGATGCACTCTCACTATGGCAGGCTGGAGTGTACGCTCTTTGGGAGATGCGCAACCGTG TGGTTTTCCGAAATTGTGAGATTCTTGTGCCCGTAGCAGCCGTGATCCAGCGATGTTCCATGCTAGCTGCTGCGCCGGTG TCAGAGGTGACGGTGGTGCCTAGACCAGCCCCGTTGTTGCAGGCAACTTGGGCCCGACCACCTTATGGTATCTACAAGCT GAATTTTGATGCAGTTGTGGCTACCACGGGAGAGGTGGGTTTTGGTTTGATTGTGAGGAATATGTTGGGTGAGGTCCTTG CTTCTGCAGCACAATATCTTCTCCATGCAGCTTCAGCGATTCTTGGGGAGGCTTTAGCCTTTCGCTGGTCTATGCAGCTT ACCATTCAGATGGGGTTTCGTTGGGTTCTTTTTGAGACAGATTGTTTGCAGCTGTTACAGCTTTGGAAGAAACCTCCAGA TGGTCGATCGTATTTATCTAGTATTGTTGGTGATTGCTTTATGTTATCTCGTTATTTTAATTATGTTGACTCGTCTTTTG TTCGCTGTGGGGGCAATTCTGTTGCTGATTTCTTAGCTGGTACCGCTTCCAAGTATACTGATATGGTTTGGTTGGAAGAG GTACCTAGGGAGGTCATAACTTTGGTTCATAAGGATGTAATGGCTTCTATGCCTGCTTTTGATTAA
Protein sequence (LotjaGi2g1v0234600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQNFWFGSPLSLCVHGFSSMEDFLADFFRAADDDALSLWQAGVYALWEMRNRVVFRNCEILVPVAAVIQRCSMLAAAPV SEVTVVPRPAPLLQATWARPPYGIYKLNFDAVVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALAFRWSMQL TIQMGFRWVLFETDCLQLLQLWKKPPDGRSYLSSIVGDCFMLSRYFNYVDSSFVRCGGNSVADFLAGTASKYTDMVWLEE VPREVITLVHKDVMASMPAFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 253 | 235 | 5.2E-34 | – | |
| PANTHER | 19 | 253 | 235 | 5.2E-34 | – | |
| CDD | 107 | 226 | 120 | 1.14818E-12 | – | |
| Pfam | 108 | 227 | 120 | 1.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0234600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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