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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0236900 |
Transcript ID | LotjaGi2g1v0236900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Methyl-CpG-binding domain protein; TAIR: AT5G13825.1 hypothetical protein; Swiss-Prot: sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6; TrEMBL-Plants: tr|V7BY65|V7BY65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0236900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69808322..69811339) extracted from Lotus japonicus Gifu genome v1.2.
ATATAACATCATTCAGCTCTAACATTGGCAGTATATATTAATTCACACAAGGTAATTGACATCGTGTTTTTGAGACTTCG GAAAATGGAGAGTGGACGTGGTAGTGAGAAAAACAATGACAATCAAGGGAAGAGGAAGATGGAAACCAACACAACATTCT CAGAGATTACAAATCAAACTATAGAAAAAATTAAGCGAAGTCGTACTGGGTCAAGCTCAATCAAGGCCCCCTTGTGCACT GCTCATGACATGACATCACCAGGATATGAGTGGTTGCTCCCAGGCTGGGTCGCAGAAGAGCGACATATGCAATCTGGCAG GGTCTATAGGGTAAGCATCACATTCTTCTGGTTTCATAACATGTTAATTTGAATTAAATTATCTTTCCTGGAAATAAATT TCAAAACCCAGAAGTTATTCATATAAGTTTTTTCAATAATTGATTTTGGCTTTGAAATCGATTGTAGAAAGGGCTATGAG GAGAAGCTTATGTGGGTAGTTTCTGGGTGCCAAAAGATGCTATGCATATCCTCATTCATCAAATATCAAGAAAATTTTGA TATACTCTTTTCATTAAAAAATCACCTTCTAGGGTTTCAATTGGGATTTTGATCTATTTCAATGCATCAAACAAATTGTT TGGTAATTATTTATATAAATCACCTAGATTTAACCATCTCTATATACTCATTTCCTTTGATCCCCCAAATCTAGGGTTTG GATGGGTGGCCGCCGCGCCGCCTCCTCGCGCGGCGGCAACCCCCTCTTTCTCCTCTCCTTTGCTCTTCATGTTATCCCTT TCTTTTGCTCCTTCCTTTGTGTTTCGTTTTGGCTTGCCCTGGGATCTCAGCGTCGATCTCTATTCCTCTCTTTTCATTAA AAAATCACCTTCTAGGGTTTCAATTGGGATTTTGATCTTCAATGCATCAAGCAGATTGTTTGGTAATTATTTATATAAAT CATCTAGATTTACCATCTCTTTCTAACTTTTATCTCTCTCTATACTCATTTCCTCTGATCCCTAGATATAGGGTTTGGAT GGGTGGCCGCCGCCTCCTTGCGCGGCGGCAACCCCTTCTCTCTGCTCTCCTTTATGCTCCTTCATGTTATCCCTCTCATC AAGCAAGCGTTTGTGTTTATGAATGCGGATATGTAAGGACTTGCCGTGACTTGTAAATCCAAGCGGATTGTCTTGGTGTT AGGTGGGTTTTTGGGATTTTGCTATGAGGTTTTCTGGCGACGGTGGTTTTCGGGTACGCTGGATGTGGTTGGGCTTGTGT TTATGGAAGATGGTAGGGTGTGGTGCGCGTGGCTAGTTGGTTCCTGTGTGATTGTTGGTCTCCAGTCCTTGTTCTGTGGA GATCGCTCGTTTTGGCTACAGCCACCTTCCGGCTTTAGCGTCTTGGTTTCTGCACGGTTTTGGATGAGTGATCATCTTTT GTGCCATTGTCTAGAGGTTGTTTATGGAGTCCTGCAAGCATTATTTTCTTTCCTGTTTGTTATGTATCTTGGTTTTTATG TCTCAGCTCTATAGTGTGGTTTAGTTTTATCTGTTGGGGCTTATGGTCAGTTCTTTTGGTTTGGTCTTTGTTGCAAGTGT TGAGCGGCTCAGTTATTTCCTTCGGTTGTTTTTGTCACCGTTTTTGACTTTTATGAAGACCTTTTTTAGAGAATTTTTCG CTTGGGGTATTTACTAGATTTTTAGCACGCTCTTGTGCGTGTAGGTTCTTTGGGAGGTTTTTGCTATATGAGCTGAATTT TGTCTAGTGTTATGCTAGCTAGATACTATACTCATGTTGAAAGGGGTTGTTTATCAACCTTCTTATCTATATAATATCAT ATCTTTTAAATTTTTCCTCACTCTGTATGGGTATATAGAAATGAGGTGTCCATAGAAGATTAACGGCTATGCGAACTAGG ATTTATGCTTCATGTGATTTTTAGATAAGCAAGCAAAATGCATTAATAGACAAAAGAAGCGCCAAAGAAAAAAAACCAAG TACAATAAGAAACAAAAACCTGGCAAAGCCTTATCAGAAGAACACTGAAAAAAGCCAAACTAGAAAAAACAGAAGTTCAA ACCAGAAGCTAAAACAAAAACAGGAAAATAAGGATAGAAAATACCACCTCTCTTCTCTACAAACCCCAACTCTCTTCCCT AGACAAAAAAAAAATCTCAGCTAGTTGAGCTTTTATATGAGAGAGAAAAGAGGAGAAAACAATTTATATAGGGCGAGGAG GATAATGAATAAAGAGGTTATATAATTTGTTCAAGTGGTCATAATTATTTTCAAATTAGGATAGTGTGTAGTAGCTAGCA GTAATGTATAAATAATGAATATAATGTGGTGTACATTTCATCTATAGATACTACTCAATTAATACGTAATACCATTCACA TGCATACTTTTTTCTCATGCAGTACTTTTACGACCCTGAAGGGAATTCCTATAAGAGCAAGACCGAGGTTAAGGCTATTT GGGAGAAGGCCGGAATAATTGTCCTTGATGGCTGAATTTGAAGGTAATAATATATATAACAACATATACATATGCTTATG GGCTATTATTTTTTCTTTCCATTAAGCACATTTTTTGTGTTTTCTTATTATTACAGGATATTCTTTGTGCTGTGCTTATA TAAGAGAATTCGAGCCTATTGGAGAAAAGCAACAATGTTTCATTTTGAAAGCAAATGGTGTATTTTTTCCGTAGGTTTTT GGTTCTTTTGAGCATGGTAACAATTTATATGTGTTATATTTATATCTGTAGTACTTTTTCTATGGATGCGTTAAGCATTT ATGTTTCATTACTTGTCAATTTGCTATGCGGATATTTGGCAGTTGTGCTGAATTTGAGCCTATTGGAGAAAAGCAACAAT GTTTAATTGCGAAAGCAAATGGTGTATTTTTTCCGTAGGTTTTTGATTCTTTTGAGCATGGTAACAATATATATGTGTGA TTAATTTCTATATCTGTAGCACTTTTTCTATGGATGCGTTAAGCATCTCTTATGTTTC
CDS sequence (LotjaGi2g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGTGGACGTGGTAGTGAGAAAAACAATGACAATCAAGGGAAGAGGAAGATGGAAACCAACACAACATTCTCAGA GATTACAAATCAAACTATAGAAAAAATTAAGCGAAGTCGTACTGGGTCAAGCTCAATCAAGGCCCCCTTGTGCACTGCTC ATGACATGACATCACCAGGATATGAGTGGTTGCTCCCAGGCTGGGTCGCAGAAGAGCGACATATGCAATCTGGCAGGGTC TATAGGTACTTTTACGACCCTGAAGGGAATTCCTATAAGAGCAAGACCGAGGTTAAGGCTATTTGGGAGAAGGCCGGAAT AATTGTCCTTGATGGCTGA
Protein sequence (LotjaGi2g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESGRGSEKNNDNQGKRKMETNTTFSEITNQTIEKIKRSRTGSSSIKAPLCTAHDMTSPGYEWLLPGWVAEERHMQSGRV YRYFYDPEGNSYKSKTEVKAIWEKAGIIVLDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 16 | 16 | - | – | |
MobiDBLite | 1 | 41 | 41 | - | – | |
MobiDBLite | 17 | 41 | 25 | - | – | |
Gene3D | 55 | 109 | 55 | 1.0E-6 | – | |
SUPERFAMILY | 56 | 107 | 52 | 2.03E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0236900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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