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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0239400 |
| Transcript ID | LotjaGi2g1v0239400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cryptic loci regulator protein 1, putative; TAIR: AT3G27520.1 cryptic loci regulator; Swiss-Prot: sp|Q7SB51|FEX1_NEUCR Fluoride export protein 1; TrEMBL-Plants: tr|A0A072U4T8|A0A072U4T8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0239400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70058456..70063012) extracted from Lotus japonicus Gifu genome v1.2.
TATTTATCGCAATGATGATGAATATAACTAACAAAACTAATTAAAAAAGGGGCATAAAGAGAAAATGTGCACATTATCTA ATATCTAGTAGACAGAAATTTTAGAATGAGAAAAGGGGGGAAAGAGAAGAGAAGAGAGCGTGAAAAGTGAAAAACACGCG CTGCGCTCTCTCCCTCCTCATTTCCAATTTTTCAAAATATGGAATCGGAAGACGACCAATGGGAACTCTGCAACGACGAC GGCTTCGTCTACAAGCGCAAGCGCCGCCGCCTCCACCCTCCTCCGCCGCCGCCGGAGGCAGATCAGGAGGCGGAGAAGCG GCGCAAAGAGCGAAAGAGGCAGACCCTACTGAAGCTGAAAGCTAAGTACGAGAAGGAGATTCTTCAGTGGGAATCTTTGT CGAACACCTTGCGCTCGATGCAAATCTCTGCTCACCAGCTTCAACCACCGCTGCAGAACCAGACCCCATTGTCGCTTCCT TCATCCTCTTCTTCTTCGTTAACGGATTCCGCTCTGCTTCAGGACCTTCTCTCGCAGGTAACTTGCATACCCATTTTTCG ATTTCGATCTGTTTTCGCTGAATATGCAAGAAATTTGAAAAAATTGGGGGAATTTTGAACTGGGTCTTGCATTTTCGATC TGCTTTCAATCTTAAGCCTAGTTGACCTAATTTACTACATTGGGAATAGTGTCTTTCTTCTCCATGATTTCCAAAACATA TTACATTAGGTGAGGTAGTGTGAAGTGAAATTCATGTGAAAAATGTCAAGAATTGAAGTTTGATATCACAAAATGACATG TTTTAATTCATATAAAAATTTGTGAAATCAATAAAAATGTGTTTTTCATTTTTTTTTTCTTGTACAATTTTTTAAAATAG AAGGTAAAATAAAAGTAAAATGACATTTTTTTATAATGAAAAAAACACTCATACCAAATAGTACTAGAACTATTTTCAAT TTCTGAGGGACATTATGGTATTTGGAGTTTGTCCATATATCATTTGTTGTTTTTTCTAACTCTGATACATTTAATAGCTA TTAGTATTAACTTACTTTTTTTCATTTTATGTGATAAAATAATGAAGTGTGACTGAACATTTGTGTAAAAGTTCATTACC CTATCATAAGAGTATTGTCATTTGTCATCAAACTCAAATTGCATGTGTAGTGAATGTGATAAGCTTAGTGGGCATAATTT AGTATCCTCAATCATGCAGGTGGAAGCTCAGGAAGCAGTAATTCAAGATATTTCTAGTTTGTGTGATGTAGCAGAAGCAA TGTGCTCCAAACGAGAAGAACAATTTAAACAATCTTTGTTTGATCTACCAATATGGGCTTCACCACTTGATCTCATGCAA GTGCTGTGTGATGAATATGATTGATTTAACCGGTTTTCCCTTGTGCATTATTATTTCTGTTGGTAATGATTTTCAAGTTG AAAGAATAGTCTTGCACCCTTCAACAACCAGTTTCATTGATTGTAACTCTAGAACACTGGTGTTAAGTAGATTAGAATTA GATCTTTGATGTTTTTGGTAAATATTTTTAGATTGATTGTATTAATTAAAGAGCATCAAACATTTGAATGGAGGCATACA ATTGGAATTACCATATAATGAATGTAAAAAGTGGGAAGGCAGTCACAAAGAAGTCTCCAATCAAGCATGAAGATGGAATG CTGCAGTTTTTTGTATGCTTGTAAAGTTCATTCACTTACTAGATTCTTACTGCTTTTCCTTTGAAAATGTGATTAAACAA CACTATTATTGCTTTATTTACTACTCTTACTAATGGGATCCAAATCTTGTCCCTGTTTGGTGTCATCTTACTTGACTCAC CAATAAAATTGTGCTGTTATTTAAAAACCACCCAGGTTATAATTGTCAAATATATGTTTTTTAAATTGACATGGTACAAT TTTATTGGTGGGTTATGGAATAGGGCTTCAAACACTGACAAAATATCTTAATCCTTACTAATGACTATTGCTATAGTTGT ATATTCATTGTAATTGGTGCAAATGGAAGTTAAGACAAAATCAATCATACTTCTTTTCTTTCAAATTCATCAATAAAAAG CATGAATCACAACTTGAAATTCTTACTTGTCTATGAAATGAAAATGTTTCTCGATAATTCAAACCCTCATATCAGTAATT ACTTCATCCGCAAGGTTTTTAAGTCAAATTCATTTAGGCGAGAAGGAAAAGGTTCAAGAAGTTCCATCTCAAATCCTGCT TTGTGACATTCATCCTCTAGACGCTTCACTTGAGAAGTCCCCTCAGGACAAAATGCGACCACGGCTCCTCCACTGCCTGT AAATTTAGATGCAGCTCCAACCTTTCTAGCAACCTCTACCATTTTTATGTTCACATCACCAAGGGCCTCATCTCCAAACA TTAACCTGTACAATATCCCAACAGAAACAAAGTTTAATAGAAACTCCACAAATTCAATTTTCCCATGCCTTTCATTTGTC AGGCTAAACAAAATGCATGCTTTGAATTTTTTAAGGAAAACTAACTTATACATGCCCTCCTGAGTGTTGTCCTCTTATAA TTGACCAATACGTGATTGCTTAGGGTAATAAATGTCATGCTATGATAGATTATAATGTGTTTTGAAGTTTGCATTTCAGT GATAGGAGGGCAGCACAACCTTCTAAATAAGATAGGGCATGAGAGAGCTCCCCATTTTTTTAGATACAGTGCATTAATCC AAGTACACCAGAAATTGAAATGATACATAAGAGTTCACCCTGTAGAATGTTTAAAGAAAATGCTTGTGCAATACCCCCGG GGGAGATAAATCTAAGTACATGACAGAAGTGTAAAGGTTAGAGGACCCTTAGGCCATTTGTTTGGATATAGGGTGAGTGT GGTCCTTAGCTTGATCTGCTTATGAGATGTGGTCCTTAAAGTTTCTGCAAAGGATACTCATGTATAACTTATTGAGTAGC CTTGTATATATTTTTGAAACATAATTGTCAAAGTTTGAAGTACTTTTTATTTTGTCACTTTAATTTTTAATTTCCTTGGT GTGACCACCTCACCTCATTTAAAACTTACAGATTATCCAAAAGTTAGGCAGCGAGCAATGGAGTTTGTCTTCTTTCATAT GGATTAGCGTTGCCCTGTTTTACAGTAGATGTTGAGGCCATTGACTCCCATGTTCTAAACTTTAAGTACTGACTGGGTAA GAACTTGTTTTAATTTAGATTTTTGTTTATTGTGCATTCATGTATTAGTTATAATGGTGTTATGCGATTAGTAGGCTGGC TATACTAGAGGTTTAATCTATATGCTGGTCTCAGTCTAGAACCAATGACTACCTACCAATGAGTAAGTTGCAGTTTGAAA CCTCATACAAGTTCCAAAGATGTATCATTTGTTGCAATACCTATCACTCATATATAATAAATGGTCTAAGTGCATTTATA CATAATGAGGGAAAATAAACTAAGAATTACCTTCGTAGCTCAAAATTTCGATTCATGAGAGCTGCAAATTTGGAATAGTC CTTTTCTTCTAATGCTGTCTTTCCTTCTTTTGCAATATTTGCAACTTCAAGCATTGATGACACGATGAACTTATCACCAT CAAGCCACCTTTGCCGTACTTTGCTATGAACCTACAGGGTAGTGTCAGTTAACATTCATATGTGGGAAAACAAAAATATT AAGGGAAGATTCTCATGGAACTGCGAGGGAAGATTCTCATGTTCTAATCACTTTATTGTGCTACCTCCAACATACATTTC ATCTCAGCCCAATGCCAACAATTTAGCAGTAAAAACTAAATCAGATAAATTTTCTTAGCTACAGACTATAAATTACCGCA GAAGGTTCTTATTTTGGGGATAATGATCTGAAATTTTGTGAAAGTCAATGCAATATAACTTGAAAAACATATTTGCAAGA AACAAAACATGCTAATTAGATGTGATAACATTACTGTACAGCTTGCATCCTCTAATAATAAAGATGAAGCCATTCCATGC CACTGACCTTCCCAGAATCACTAGGATTTACTGCATATATGAGATACAGAGGTGGGAGAAGGCTCAAATCCATGGGTATA TAAATTCCATGCCCCTTCTTATCCATGATTTCCCTGCTGAAGTCCTACAAAAGCAGAGAAAATCACATCACGTAATTCAT CGGTACACCATACACACTTGAAACAAAAGTTTGAAGCTAAGCAATGTACCATGTAAACTAGGCCGCCATAAACTTGCACT ACCCGATCTTGAAGACCAGCAACAATTCCAAGCTCTCCCTCAGCTGCAAGGATAAGGTTAGGCCTTTCTTCCACCTTGAT CAGATGCCTGACATTGTAGAAATCAAGAAAGCAGTTCAAGGCAGCACATACAATCCCACTAGAACCCGAAAGTCCACTCT GAAACACAAAATTCAGAACATTATTAAGCCATACAATAAAATAGCAACTTGAAAAAATAGAAAACAAACTTTTCACAAAA TTAAATAATTAACAAGCATCATGATAACAGGGTAGACAAGATAACAGAGTAGAAGACAACATCAGCATAAATAAAAG
CDS sequence (LotjaGi2g1v0239400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGGAAGACGACCAATGGGAACTCTGCAACGACGACGGCTTCGTCTACAAGCGCAAGCGCCGCCGCCTCCACCC TCCTCCGCCGCCGCCGGAGGCAGATCAGGAGGCGGAGAAGCGGCGCAAAGAGCGAAAGAGGCAGACCCTACTGAAGCTGA AAGCTAAGTACGAGAAGGAGATTCTTCAGTGGGAATCTTTGTCGAACACCTTGCGCTCGATGCAAATCTCTGCTCACCAG CTTCAACCACCGCTGCAGAACCAGACCCCATTGTCGCTTCCTTCATCCTCTTCTTCTTCGTTAACGGATTCCGCTCTGCT TCAGGACCTTCTCTCGCAGGTGGAAGCTCAGGAAGCAGTAATTCAAGATATTTCTAGTTTGTGTGATGTAGCAGAAGCAA TGTGCTCCAAACGAGAAGAACAATTTAAACAATCTTTGTTTGATCTACCAATATGGGCTTCACCACTTGATCTCATGCAA GTGCTGTGTGATGAATATGATTGA
Protein sequence (LotjaGi2g1v0239400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESEDDQWELCNDDGFVYKRKRRRLHPPPPPPEADQEAEKRRKERKRQTLLKLKAKYEKEILQWESLSNTLRSMQISAHQ LQPPLQNQTPLSLPSSSSSSLTDSALLQDLLSQVEAQEAVIQDISSLCDVAEAMCSKREEQFKQSLFDLPIWASPLDLMQ VLCDEYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 164 | 162 | 3.9E-57 | – | |
| MobiDBLite | 19 | 47 | 29 | - | – | |
| MobiDBLite | 27 | 44 | 18 | - | – | |
| Coils | 40 | 60 | 21 | - | – | |
| MobiDBLite | 78 | 100 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0239400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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