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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0241200 |
| Transcript ID | LotjaGi2g1v0241200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT5G40490.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I3SPI3|I3SPI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0241200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70316659..70320568) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGTTCTCCCAAAAACTCGATGGCCACAATACAAGGGATTTTAGATCGGCCCATGTATCATCCCAAAAATCATATAA AAAGCCCAAAGAAAATTTAAAAGGGGTTTTAGCATCACAAAGCAACAAACACAAGACGCATATCATATCAAATATCTAAT CTAGGGTTTCTCTCTTCCCTTCTCTCACGTCTCTGCTTCCGATAACCGAAACCTCTTCTCTTCTCCCTCTCTCGGAACCC ATGGAATCACCCGGCAACGACCATGTAGTTGGTGGCGGAGAATCCAACGACGTCGCCAGAACCTATTCTCACAGAGAAGA CCACGACCAGCACCACAACTCTCAACCTCTCACCGGCGACGGTGCCAGTCCCGGGTAACTTTCAATCTTCTCGTTTTCGC TCTGAAATCTGTTTGCCTTCCGATTTGATTCGAACCTTGACAAACCCAGCTTAAAAGATTCAATTCTTTCGCGTTTCAAT GAAAAGGGGTTTATTCAATTTTGTGTATATTTTAGATTAGATGTTAATGATGCTGTTAGATTTGGTTCTAATTCCACTCA ACCCCATAATTTGCAGAAAGATTTTTATAGGTGGTTTAGCGAGAGAAACGACCATTGGTTAGTGCTTGCTTTGTCTTTAT TTATTGTTGTAATTGTGATTATAAATTTATAGTTATAGGGGGTGTTAATCCCTTTACTATAATGTATCGATTTCGAGCTT TGTGTGTTGTTTTCTTATCTTTGTTGGTTGTGTTTCTGTGTTGCAGCCCAATTTATCAAGCACTTTGGTAAATATGGTGA GATTACAGATTCTGTTATCATGAAGGACAGGAAAACTGCTCAGCCTCGTGGGTTCGGGTTTATTACGTATGCGGATCCCT CTGTGGTTGATAAAGTCATCGAGGACACTCATATCATCAATGGCAAGCAAGTATGTGTTGTTGTATTTGATAATTTATTA TTGTATTAGGAGTTTTATGTGTAGTGATTAGTGAATGTGTGCTTTGCTGGCTCTTATGGTTTTGGGATCATATATAGGTT GAAATTAAGCGGACGATACCAAGGGGAGCAGTTGGTTCTAAGGATTTTAAGACAAAGAAAATATTTGTAGGTGGTATTCC TTCAAATGTGACTGAAGGTAGGTTGCCTCTTTAGATAGCTAATTTTTTGCTGCTTGACTGTGAGGTAACTTAACGAGGGG GGCTGATTACAACACCTCAAGAGAGAGCAAACTCCTAAATATCGGGATAGTGTAGACATAAAAAATTATATAAGTTTCAT ATTCTAGAATTTAGCATTGTTTTAATGTGAGTATTATTTAGGGCCTGTCAAGAAGTTTGCACTGATATTGTACACAAACA GAGCTTACTTATTGTAGTGTACCTGATAATGTTTTTCAAGCTTTCTTCACGTATAATGTCTTGCAAACCACCTGCACACA CAGAATTCACATCCGTGTAGATGTGAATGATGCATTGATGCGTCATGTTTGTATGGTGGTGGGTAAAAAGAGTTGACAAC ATTCTTTCTTTAAAGCTCAGTTAAATTTATTTACAGCTGTTTTTCAAATACTAAAGTGCTGAAATTGACTTTAAAAGTAT CTTATAAATCATAGAATAGCTGCAGCAAATGGCACCTTGCTTTGGTTGATATTGTTTTTAACCAGAGATACTTTTGTGCA GATGAATTTAGAGACTTCTTCACACGCTATGGAGAAGTCAAAGACAACCAAATAATGCGTGACCACTCCACCAATCGATC TCGTGGCTTTGGGTTTATCACCTTTGACTCGGAGGATGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGACTTTG CTGGAACTCAGGTGAGGCATCTTTCATATTAAACAGTACCTGCATTGCATTATTGTTCCTTCACATTGTGGAATTTTACT TCCATATTTCTTTTTCTGTAACATCATTATTAGAGTGGGATTTCCTTGGGAGGCTTGCATTATTGTTTTAGTTTAATTTT TTTAGCTGCACTTAATTTTCTTTGGGCTATTTTTATTCTTTTGTTGGTAGCAACATTGAGAAACTACTGTGAACCGTAAA GTGCTTGAGGATGAAGTTCAATCATATTTCCTTGTAGGAATTTGAAAATCACCTCCTACTCTTTTACTTTTCTTTCCTTT TTTGGATGGCGCGGGTTAGGTTCAGTCCTGAAATCATCTATACCATTTGCTAGAGTTGCCTTGAGCAGTGCATCAATCTA ATATATCAACCTTGATATTCATATTTCTTAGTTTTAATTGTTTGACCTACTATTTTAGGTTGGTGCCTTATGAATAGCAG ACATTTTTGTACATGTTACATAATTTATTTGTGATTTGATAGATCAGGAAACTTCTTGAATTATTTTGTCTGTTAGTTTT CAATTCTCATCAAATGTGATTCCTGTCAATAAGATAAATTGAACCATCTTTCCTTTGTAGGTGGAAATCAAGAAGGCTGA ACCAAAGAAGCCAAACCCACCTACTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCGTACAGTAGTGGATATGGAG AAGCTTATGATGGCTTTGGTGGGAGCTATGGTGCTGCAGGTGGTTACAGATCTAGTGCTGCCTATGCTGGCAGGAGTGGT GCTTATGGTGGGTATGGAAGCGAGTTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTTC CCTTGGGTTTGCTGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGAGTT ATGGGGCATACGGTGCTGGTGCTGCTGCTGGTGGGGGTTCTTCTGCCGCTGGTGCCTATCAAGGTGGCTATGATGCCAGC CTAGCGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGTGGATATGGTGCTGGTCGATATCATCC TTATGGAAGATAGAAGCTTATAACCTAGCATTTTTAGTCTAGGACTGATATGTCTAGCATCAAAACAAGTTTTTAGTTTG TGGTTCTTCATTTAGATTACATATTTTCATTTTTTAAAAAGCTGTCAAGGATTTATCAGCATACTTATTTCTTGTTAACT GTTGAAGTTGAAGCAAATTTTCCTTCTGAAGTCTGGTTTGTGATTGATGTAAGAGCTGCAAATTTTGCAGTTTGTTGTAT TTTCAATCTTGTCAATTATACTTGTGGTGATGTTTCTTACTGCTGCCGTTTTGTTTGATTTGATTACTCCTTCATGTTTA TTTGTTATTTTCATATATAGAGTAATCCTCCAAATTTGTCGTCAAATTTATTCCAGATGCATTAGTTCTTGAGATTATAA GAATGTGTTCTTAGTTGGTTATATTAGTCATTTTAAGGGATTAATGTATGACCAATGTGGTTGACACTTGTGATTCTAAT TTCTAAGAGACCATAGTGTGATTATTGTAAGGGGCTGATGTCTTTTGCCAATTATCAAAGGGGGCTAACAGTTGGAGTTC TTTGTTAAGCAAATTGAATGTTAGAGAGTGAGACAGCATGTCTATATTTAATAGCAAATTAAAGGTGTCATTTTCTCTGC TTAAATTGATGCCTACTGCTAACCTTCCCTGGACAAGAGATGACTGATAAGATAGCGTTAAGAGGATTGAATTGTTCATG AGTATGACAATGAGTACATGACAAAAAAAAGTCCTATTAAGGGTAATTAGAGATGCAATCACATAAGAGGCAGATAGGCA TATAATTGAAGACAATGCACATGTTTGAGCTCAAATCACCCAAAGTAAATGAATAATAATTTTTTTGCATTAGTTTTATA AGATTGAAAAACGTGGTTCTGGTTGCTCTCTCAGTATCTATTGTTTCTCACTTTCAGTGGCAAACGTTAT
CDS sequence (LotjaGi2g1v0241200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCACCCGGCAACGACCATGTAGTTGGTGGCGGAGAATCCAACGACGTCGCCAGAACCTATTCTCACAGAGAAGA CCACGACCAGCACCACAACTCTCAACCTCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTTATAGGTGGTTTAGCGA GAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACAGATTCTGTTATCATGAAGGACAGG AAAACTGCTCAGCCTCGTGGGTTCGGGTTTATTACGTATGCGGATCCCTCTGTGGTTGATAAAGTCATCGAGGACACTCA TATCATCAATGGCAAGCAAGTTGAAATTAAGCGGACGATACCAAGGGGAGCAGTTGGTTCTAAGGATTTTAAGACAAAGA AAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTCACACGCTATGGAGAAGTCAAA GACAACCAAATAATGCGTGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACCTTTGACTCGGAGGATGCTGT TGATGATCTTCTATCTATGGGGAACAAGATTGACTTTGCTGGAACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGC CAAACCCACCTACTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCGTACAGTAGTGGATATGGAGAAGCTTATGAT GGCTTTGGTGGGAGCTATGGTGCTGCAGGTGGTTACAGATCTAGTGCTGCCTATGCTGGCAGGAGTGGTGCTTATGGTGG GTATGGAAGCGAGTTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTTCCCTTGGGTTTG CTGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGAGTTATGGGGCATAC GGTGCTGGTGCTGCTGCTGGTGGGGGTTCTTCTGCCGCTGGTGCCTATCAAGGTGGCTATGATGCCAGCCTAGCGGGTGG ATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGTGGATATGGTGCTGGTCGATATCATCCTTATGGAAGAT AG
Protein sequence (LotjaGi2g1v0241200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPGNDHVVGGGESNDVARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDR KTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVK DNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIKKAEPKKPNPPTPSSKRYNDSRSSYSSGYGEAYD GFGGSYGAAGGYRSSAAYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAY GAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGRYHPYGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 127 | 114 | 1.5E-21 | ||
| MobiDBLite | 24 | 43 | 20 | - | – | |
| PANTHER | 37 | 278 | 242 | 1.3E-117 | – | |
| PANTHER | 37 | 278 | 242 | 1.3E-117 | – | |
| SUPERFAMILY | 39 | 123 | 85 | 4.3E-21 | ||
| ProSiteProfiles | 45 | 121 | 77 | 14.76 | ||
| SMART | 46 | 117 | 72 | 4.9E-19 | ||
| Pfam | 47 | 114 | 68 | 1.1E-12 | ||
| Gene3D | 128 | 237 | 110 | 1.3E-25 | ||
| SUPERFAMILY | 128 | 241 | 114 | 5.1E-28 | ||
| ProSiteProfiles | 133 | 211 | 79 | 18.99 | ||
| SMART | 134 | 207 | 74 | 1.7E-23 | ||
| Pfam | 135 | 204 | 70 | 1.6E-17 | ||
| MobiDBLite | 204 | 229 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0241200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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