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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0241200 |
| Transcript ID | LotjaGi2g1v0241200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT5G40490.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I3SPI3|I3SPI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0241200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70317124..70319631) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCGCGTTTCAATGAAAAGGGGTTTATTCAATTTTGTGTATATTTTAGATTAGATGTTAATGATGCTGTTAGATTTGG TTCTAATTCCACTCAACCCCATAATTTGCAGAAAGATTTTTATAGGTGGTTTAGCGAGAGAAACGACCATTGGTTAGTGC TTGCTTTGTCTTTATTTATTGTTGTAATTGTGATTATAAATTTATAGTTATAGGGGGTGTTAATCCCTTTACTATAATGT ATCGATTTCGAGCTTTGTGTGTTGTTTTCTTATCTTTGTTGGTTGTGTTTCTGTGTTGCAGCCCAATTTATCAAGCACTT TGGTAAATATGGTGAGATTACAGATTCTGTTATCATGAAGGACAGGAAAACTGCTCAGCCTCGTGGGTTCGGGTTTATTA CGTATGCGGATCCCTCTGTGGTTGATAAAGTCATCGAGGACACTCATATCATCAATGGCAAGCAAGTATGTGTTGTTGTA TTTGATAATTTATTATTGTATTAGGAGTTTTATGTGTAGTGATTAGTGAATGTGTGCTTTGCTGGCTCTTATGGTTTTGG GATCATATATAGGTTGAAATTAAGCGGACGATACCAAGGGGAGCAGTTGGTTCTAAGGATTTTAAGACAAAGAAAATATT TGTAGGTGGTATTCCTTCAAATGTGACTGAAGGTAGGTTGCCTCTTTAGATAGCTAATTTTTTGCTGCTTGACTGTGAGG TAACTTAACGAGGGGGGCTGATTACAACACCTCAAGAGAGAGCAAACTCCTAAATATCGGGATAGTGTAGACATAAAAAA TTATATAAGTTTCATATTCTAGAATTTAGCATTGTTTTAATGTGAGTATTATTTAGGGCCTGTCAAGAAGTTTGCACTGA TATTGTACACAAACAGAGCTTACTTATTGTAGTGTACCTGATAATGTTTTTCAAGCTTTCTTCACGTATAATGTCTTGCA AACCACCTGCACACACAGAATTCACATCCGTGTAGATGTGAATGATGCATTGATGCGTCATGTTTGTATGGTGGTGGGTA AAAAGAGTTGACAACATTCTTTCTTTAAAGCTCAGTTAAATTTATTTACAGCTGTTTTTCAAATACTAAAGTGCTGAAAT TGACTTTAAAAGTATCTTATAAATCATAGAATAGCTGCAGCAAATGGCACCTTGCTTTGGTTGATATTGTTTTTAACCAG AGATACTTTTGTGCAGATGAATTTAGAGACTTCTTCACACGCTATGGAGAAGTCAAAGACAACCAAATAATGCGTGACCA CTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACCTTTGACTCGGAGGATGCTGTTGATGATCTTCTATCTATGGGGA ACAAGATTGACTTTGCTGGAACTCAGGTGAGGCATCTTTCATATTAAACAGTACCTGCATTGCATTATTGTTCCTTCACA TTGTGGAATTTTACTTCCATATTTCTTTTTCTGTAACATCATTATTAGAGTGGGATTTCCTTGGGAGGCTTGCATTATTG TTTTAGTTTAATTTTTTTAGCTGCACTTAATTTTCTTTGGGCTATTTTTATTCTTTTGTTGGTAGCAACATTGAGAAACT ACTGTGAACCGTAAAGTGCTTGAGGATGAAGTTCAATCATATTTCCTTGTAGGAATTTGAAAATCACCTCCTACTCTTTT ACTTTTCTTTCCTTTTTTGGATGGCGCGGGTTAGGTTCAGTCCTGAAATCATCTATACCATTTGCTAGAGTTGCCTTGAG CAGTGCATCAATCTAATATATCAACCTTGATATTCATATTTCTTAGTTTTAATTGTTTGACCTACTATTTTAGGTTGGTG CCTTATGAATAGCAGACATTTTTGTACATGTTACATAATTTATTTGTGATTTGATAGATCAGGAAACTTCTTGAATTATT TTGTCTGTTAGTTTTCAATTCTCATCAAATGTGATTCCTGTCAATAAGATAAATTGAACCATCTTTCCTTTGTAGGTGGA AATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCTACTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCGTACA GTAGTGGATATGGAGAAGCTTATGATGGCTTTGGTGGGAGCTATGGTGCTGCAGGTGGTTACAGATCTAGTGCTGCCTAT GCTGGCAGGAGTGGTGCTTATGGTGGGTATGGAAGCGAGTTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTA CAGAGGAGATCCTTCCCTTGGGTTTGCTGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTG GAGCTAGTGAGAGTTATGGGGCATACGGTGCTGGTGCTGCTGCTGGTGGGGGTTCTTCTGCCGCTGGTGCCTATCAAGGT GGCTATGATGCCAGCCTAGCGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGTGGATATGGTGC TGGTCGATATCATCCTTATGGAAGATAG
CDS sequence (LotjaGi2g1v0241200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGACAGGAAAACTGCTCAGCCTCGTGGGTTCGGGTTTATTACGTATGCGGATCCCTCTGTGGTTGATAAAGTCAT CGAGGACACTCATATCATCAATGGCAAGCAAGTTGAAATTAAGCGGACGATACCAAGGGGAGCAGTTGGTTCTAAGGATT TTAAGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTCACACGCTAT GGAGAAGTCAAAGACAACCAAATAATGCGTGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACCTTTGACTC GGAGGATGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGACTTTGCTGGAACTCAGGTGGAAATCAAGAAGGCTG AACCAAAGAAGCCAAACCCACCTACTCCATCATCCAAGCGCTATAATGACTCAAGGTCTTCGTACAGTAGTGGATATGGA GAAGCTTATGATGGCTTTGGTGGGAGCTATGGTGCTGCAGGTGGTTACAGATCTAGTGCTGCCTATGCTGGCAGGAGTGG TGCTTATGGTGGGTATGGAAGCGAGTTTGGTGGGTATGGAGGATATGCTGGAGCAATGGGGCCCTACAGAGGAGATCCTT CCCTTGGGTTTGCTGGTCGTTATGGTGGAAGCTTTAGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGAGT TATGGGGCATACGGTGCTGGTGCTGCTGCTGGTGGGGGTTCTTCTGCCGCTGGTGCCTATCAAGGTGGCTATGATGCCAG CCTAGCGGGTGGATATGGAGGGGCTAGTGGAGGCTCCTTCTATGGGAGTAGAGGTGGATATGGTGCTGGTCGATATCATC CTTATGGAAGATAG
Protein sequence (LotjaGi2g1v0241200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRY GEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIKKAEPKKPNPPTPSSKRYNDSRSSYSSGYG EAYDGFGGSYGAAGGYRSSAAYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES YGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGRYHPYGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 202 | 202 | 1.1E-98 | – | |
| PANTHER | 1 | 202 | 202 | 1.1E-98 | – | |
| SUPERFAMILY | 1 | 47 | 47 | 3.26E-8 | ||
| Gene3D | 1 | 48 | 48 | 2.1E-9 | ||
| Gene3D | 50 | 162 | 113 | 7.5E-26 | ||
| SUPERFAMILY | 53 | 165 | 113 | 3.63E-28 | ||
| ProSiteProfiles | 57 | 135 | 79 | 18.99 | ||
| SMART | 58 | 131 | 74 | 1.7E-23 | ||
| Pfam | 59 | 128 | 70 | 1.1E-17 | ||
| MobiDBLite | 128 | 153 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0241200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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