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LotjaGi2g1v0250500.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0250500
Transcript ID	LotjaGi2g1v0250500.1
Lotus japonicus genome version	Gifu v1.2
Description	EG2771; TAIR: AT5G14910.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp\|B4SHA9\|SECA_PELPB Protein translocase subunit SecA; TrEMBL-Plants: tr\|I3SJA2\|I3SJA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0250500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:71620814..71623962) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGAGAGAGGTATGAAATGAGATGAAAAAGAATACTAAATTATGTGAGATAAACATATTTACATATGCCATCTATTTT TTGTTCACACATGCCATTTCAATACATAATTTCTTCTTGTCAAAAAACACACAAAATCTTGGGCTTAAGAAGCTATTGGG CCAAAAACATCTACAACCAACTTCACACATGTAAAGAAAAAACAGAAAAAAAACTTGGTACTAGAAGCAGAGTACAACAT CATGTTCTGTTGTGGATAGGGAGTGAAAAACAGCAACTTCATCATCAACTATCCAACCAGTTATCATCACTGTGTGTTGA AAATGGCAACACTATTTTCATCTCCATCTCTGCATTCCATTCGCCTCTCTTCTCCTCCTTCTTCTACACCTTCTTCTCCT TCCCTCGCGTTTTGCACCTTCCCTCTCCACCCTCGCTGTTCACCTTTGAAGGCATGGACAGTCAAGAACCGTTTGTTTCG TGTGGCCAAGGCGGTTGAAGGAGAAGAAGAAGTCAGCACCACTGAGTCTGAACCACCGCAACAACCATCCACCTCGGAGC AGCAACCCGTTGTGGTTCCCATTTCCCCATCTGATACTCTCACCATGCTCTTTCAGGTACACCACCACTAGTTTCACTTT GATGACTGGTAGGTGCTTGTTGTAATGCCCGTGTGAAAATTTTGGAGCTTTGGACCTTGTATGTAATGTGATGAACTAGT TTTGTGGATGTTCCTTTAAATCTAAATTGTGATGAATTTTGCAGACCTACCCATTAGGCAATTTTTGTTCTTTGTTTGAT ATTTTGACTCAGTTATTATCTTTTCTTGCAATTGTGGTCCTAAATTATGCAGGGATTGTATGAAATTAGAATACTGATAA AAATAGGCTTATCATGATAGTGTTTGATAAAATGACATGCAAGATTGTGTAAGGCTGAGACTTCTTGATGGGGGAGGTTG TGAACTGTGAAGTAACTACAGAGTGAACCTAGCTAAATAAATTGGACTAAGCACCCAAATTAGTGTCTTAAAGATACAGC TTTAATCATATTAGTCTTTGTAAGACAAAAATGACCATGTAAATCCCTTAAATATCCATTCCCTAGGTCAAATTAGTCTT AGAGTTAATAATGTCATGGGCTAATTTGACTTCTAAAATACATGTTTTAGGGACCTATGTGATCATTTTCATCTTCCTGA TATTAATTATCAACATTCTATCTTTCTAGGAATCAATTGAGAGTTTACTCAAATAATTAACCCTAACTGTCCGCATATCA TATCATATCATATTGGCTAAAGACCTATCATATTATCCTCACTGATCAATACTGCATATGTCTGCCCCCTAAACGGACGG ATAACTTAATAAATGGTCTTTTGAGCCACTGATTATGGTATATACTTGTTGTAATTGGATCACTTTGCTTGGGACTAACT GTCTACTTTGGCAAATTTGAAGGCAGAGGGAATATTGAATGAAACAGCTGTTCCAGCTTTAACAAAAGCTCTAGAGGTAG CTCTATAAACTTTCATAATCTAAATTTTTTTTGTTCAATAACTTCAATGTGAACATAGATTGATGCAGTAAGTCATTTTT CTGTCATTGTGTCATTTGTCTGTATTCTGTTCCGAGTTCCTTGTTGAACCTAGCAGCCATAATGCTGCTTATGATTAGGT TCTTGTTTTTTAATATCACCATTTATTACTTTCTTCTAAAAAGTACATGAATGAGTCTTGTTGACCGGTTGCCTTTAACT TAATGATGATGCAGGCAGGTTAGAGTGTTTTCTTTTTTCAGACTGAATCCTGTCCATCTTCAATCCAAATGTAATTTAAA AGAAGATAATGGTATACTACATTTGGGAAACAAAAGTCAACCTAGTTTATGAATGGGGTGAGATGTTCATAGGATGATCA TGAAGAGAGGAAGTCCCATTCATTGGCCAAATATTGTGAAGTGAGGGGGAATGCGTTTCTTCGTCTGCAGTAACAGAAAT AGCTTAATCTAGTCATGGGCGTATGTCTTATTTATATCCATTAAGGATTTATAAAGACAGCTTTTAATTCTATTTCTATA AAATAATTTGGTTGTTATATTTTTGATTGTCTTCTTTGTTTGTTCTTCTGTCATGTCGTTATTGTCTTTGGAAACTTTGG GGCTTATTACCTTAACACTTGCTTATTAATGTTCCATTACGTTTATCTTTATAGGAGACAGATGGTGTTACCAATTTGAG GGTTCATCTTTTTGAGGGACTCGCAAGTTTAGAGGTATGCTTTAGTACAATATCCAATTGCCTAAAGGCTTTTATTTCTT TCAATAATGAACTCTAAACTATTGATTTTGAATGATTGTGAGAAATCAAACTATTTTTTGCTGCAACCTTTATGGGATTG AAATCTCCTCTTAATAATTAATTCATTATTTTGTCATTGAAATGTTGATAATACACATCATATCCTTGATCTTTATAAAC TTTGCTACTGTTAAGTTTTTTATGTAAGGAAGCAAGTGCTCATGAGCCCGTGGCAGAGAATTTAAGAAATGGTTTTTTAT TAGATAAACATTACACGATGAGTTTAACTTTACTTCAATATCATTAATGAATTTTGTGCTCTTATTCAGTTGGAAAAACA GACAACAGTCCAAGCTACAGGAGTGGCTTCTAGTCTGGTAGAAACCATACAAGGTTTAGGCTTTAAATTACAGACGTTAA ATCTGAGCTTTGACGACGCAGAAGTTGCAGCTGCCTAGACTAAATGTGCTGGTTTAAGACCACTGGAGTTTGAGGAAGGA ACAATTTATAGAAGTGGCATGTTCCTGCTTTTCTGACTAACGCCTACTGCAGTCATTTTTGGTTTGTATAGGCTTTGATT AAGGGTGTTGGTTATCTTTTTTTGTATTTGGAGGGTGTTGCTTAAATTTCTTTATTGTTGTTATTATTTCCTGGAAAAAT TTTAAGAGTATGTAATGATAAAAGGCTTCAACTGATACAGCTTTTTGATGGTAGAAAGCTTCATCTGTTCTTTTTTTTTT TTAAATCTTAATTTTGTATTATTTTATTAGACATGCTCGACCAAGTTAAGAAGTGGACTTTAAAGGATACAATACCAATT TAATTAGGGTATCTTACCAATTATTTTGT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0250500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACACTATTTTCATCTCCATCTCTGCATTCCATTCGCCTCTCTTCTCCTCCTTCTTCTACACCTTCTTCTCCTTC CCTCGCGTTTTGCACCTTCCCTCTCCACCCTCGCTGTTCACCTTTGAAGGCATGGACAGTCAAGAACCGTTTGTTTCGTG TGGCCAAGGCGGTTGAAGGAGAAGAAGAAGTCAGCACCACTGAGTCTGAACCACCGCAACAACCATCCACCTCGGAGCAG CAACCCGTTGTGGTTCCCATTTCCCCATCTGATACTCTCACCATGCTCTTTCAGGCAGAGGGAATATTGAATGAAACAGC TGTTCCAGCTTTAACAAAAGCTCTAGAGGAGACAGATGGTGTTACCAATTTGAGGGTTCATCTTTTTGAGGGACTCGCAA GTTTAGAGTTGGAAAAACAGACAACAGTCCAAGCTACAGGAGTGGCTTCTAGTCTGGTAGAAACCATACAAGGTTTAGGC TTTAAATTACAGACGTTAAATCTGAGCTTTGACGACGCAGAAGTTGCAGCTGCCTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0250500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATLFSSPSLHSIRLSSPPSSTPSSPSLAFCTFPLHPRCSPLKAWTVKNRLFRVAKAVEGEEEVSTTESEPPQQPSTSEQ QPVVVPISPSDTLTMLFQAEGILNETAVPALTKALEETDGVTNLRVHLFEGLASLELEKQTTVQATGVASSLVETIQGLG FKLQTLNLSFDDAEVAAA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	26	26	-	–
PANTHER	PTHR35756 View details on PTHR35756 Search for proteins/transripts with this domain View external data on PTHR35756	1	176	176	5.0E-61	–
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	29	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	58	84	27	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	67	84	18	-	–
SUPERFAMILY	SSF55008 View details on SSF55008 Search for proteins/transripts with this domain View external data on SSF55008	88	164	77	1.83E-5	IPR036163 Show description in modal box View details on IPR036163 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50846 View details on PS50846 Search for proteins/transripts with this domain View external data on PS50846	94	165	72	9.958	IPR006121 Show description in modal box View details on IPR006121 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0030001 View details of GO:0030001 AmiGO InterPro QuickGO	Biological process	Metal ion transport	The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.	Subterm of View details of GO:0006812
GO:0046872 View details of GO:0046872 AmiGO InterPro QuickGO	Molecular function	Metal ion binding	Interacting selectively and non-covalently with any metal ion.	Subterm of View details of GO:0043169

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0250500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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